Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A36 F92 I0 R1 1778 260.6 11261716 96.7% 10890079 148.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,384,391 C→A 100% Q227K (CAA→AAA)  cmpX → protein CmpX

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,384,3910CA100.0% 779.3 / ‑6.8 218Q227K (CAA→AAA) cmpXprotein CmpX
Reads supporting (aligned to +/- strand):  ref base C (1/1);  major base A (105/109);  minor base T (0/2);  total (106/112)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 221 total aligned reads displayed.

CAGCTTGAAGTGAAAACCGACCTGCTGAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACCAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAA  >  NC_002947/2384244‑2384537
                                                                                                                                                   |                                                                                                                                                  
cagcTTGAAGTGAAAACCGACCTGCTGAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACaaa                                                                                                                                                  <  2:4155822/150‑1 (MQ=255)
  gcTTGAAGTGAAAACCGACCTGCTGAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGt                                                                                                                                                >  2:234162/1‑150 (MQ=255)
    ttGAAGTGAAAACCGACCTGCTGAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCg                                                                                                                                              >  2:4303175/1‑150 (MQ=255)
      gAAGTGAAAACCGACCTGCTGAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGc                                                                                                                                            <  1:2134565/150‑1 (MQ=255)
        aGTGAAAACCGACCTGCTGAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCca                                                                                                                                          <  2:3333378/150‑1 (MQ=255)
            aaaaCCGACCTGCTGAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCcagcag                                                                                                                                      >  1:3690268/1‑150 (MQ=255)
            aaaaCCGACCTGCTGAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCcagcag                                                                                                                                      <  1:3859449/150‑1 (MQ=255)
            aaaaCCGACCTGCTGAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCcagcag                                                                                                                                      <  1:5107490/150‑1 (MQ=255)
              aaCCGACCTGCTGAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGt                                                                                                                                    >  2:1277555/1‑150 (MQ=255)
                ccGTCCTGCTGTACCTCGTCATCGTTATCGGGCTGATTACGGTTGGTCTGGCCGTTGGCTTGGCCTTGGGCCTTGGCAGTCGCGATTTTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGc                                                                                                                                  <  2:4639713/150‑1 (MQ=255)
                ccGACCTGCTGAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGc                                                                                                                                  <  2:637516/150‑1 (MQ=255)
                 cGACCTGCTGAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCg                                                                                                                                 >  2:868223/1‑150 (MQ=255)
                   aCCTGCTGAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCTAGCAGGTGCGGa                                                                                                                               >  1:4253937/1‑150 (MQ=255)
                      tgctgAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTg                                                                                                                            <  1:1518388/150‑1 (MQ=255)
                       gctgAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTgg                                                                                                                           >  1:1633989/1‑150 (MQ=255)
                       gctgAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTgg                                                                                                                           <  2:1059582/150‑1 (MQ=255)
                        ctgAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGga                                                                                                                          <  2:3824826/150‑1 (MQ=255)
                        ctgAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGga                                                                                                                          <  1:4340455/150‑1 (MQ=255)
                           aaCCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCAGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGagag                                                                                                                       <  2:1499590/150‑1 (MQ=255)
                             ccACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGt                                                                                                                     >  2:605174/1‑150 (MQ=255)
                               aCGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCg                                                                                                                   >  1:1399436/1‑150 (MQ=255)
                                    aacGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAggg                                                                                                              <  2:1631907/148‑1 (MQ=255)
                                    aTCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAggg                                                                                                              >  1:1595296/1‑150 (MQ=255)
                                     tCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGc                                                                                                             >  2:1080957/1‑150 (MQ=255)
                                     tCGTTATCGGGCTGATTACCGTTGGTCTGACCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGc                                                                                                             >  2:3770496/1‑150 (MQ=255)
                                           tCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCg                                                                                                       >  1:197402/1‑150 (MQ=255)
                                             gggCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATTTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCgag                                                                                                     <  1:2751428/150‑1 (MQ=255)
                                             gggCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCgag                                                                                                     <  2:5523653/150‑1 (MQ=255)
                                              ggCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCgagg                                                                                                    >  2:1964927/1‑150 (MQ=255)
                                               gCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCgagga                                                                                                   <  2:1317255/150‑1 (MQ=255)
                                               gCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCgagga                                                                                                   <  1:2366913/150‑1 (MQ=255)
                                               gCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCgagga                                                                                                   <  2:3555389/150‑1 (MQ=255)
                                               gCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTACCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACTAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCgagga                                                                                                   <  2:2153816/150‑1 (MQ=255)
                                                 tGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGgaga                                                                                                 >  2:81845/1‑150 (MQ=255)
                                                   aTTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATc                                                                                               <  2:5102661/150‑1 (MQ=255)
                                                         gTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTa                                                                                           >  1:2836283/1‑148 (MQ=255)
                                                             gTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGa                                                                                     <  1:1807652/150‑1 (MQ=255)
                                                              tCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGaa                                                                                    <  1:3617876/150‑1 (MQ=255)
                                                               cTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAg                                                                                   >  2:1850957/1‑150 (MQ=255)
                                                                tGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAga                                                                                  <  2:3949771/150‑1 (MQ=255)
                                                                    cGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAgacgac                                                                              >  2:3071784/1‑150 (MQ=255)
                                                                     gTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGacgacg                                                                             >  1:564077/1‑150 (MQ=255)
                                                                         ccTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACgctgc                                                                         >  2:1969606/1‑150 (MQ=255)
                                                                           ttGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGctgctg                                                                       >  1:4848560/1‑150 (MQ=255)
                                                                           ttGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGctgctg                                                                       >  1:2553079/1‑150 (MQ=255)
                                                                             ggCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGGCGACGCTGCTGAc                                                                     >  2:2416420/1‑150 (MQ=255)
                                                                             ggCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGAc                                                                     <  1:352551/150‑1 (MQ=255)
                                                                             ggCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAAGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGAc                                                                     <  1:645709/150‑1 (MQ=255)
                                                                              gCCATGGGCCTTGGCAGTCGCGAAATTGAAGGGCAGATCCTGGCCGGCATCTACGTGCTCGAGCTGTACAAAGTCGGCCAGAAGGTGCTGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGAAGCTTCTGAcc                                                                    >  1:3787961/1‑150 (MQ=255)
                                                                               ccATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCg                                                                   <  1:1146303/150‑1 (MQ=255)
                                                                                 aTGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCgat                                                                 >  1:4935264/1‑150 (MQ=255)
                                                                                   gggCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCgag                                                                                                     >  2:3006813/1‑112 (MQ=255)
                                                                                   gggCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCgag                                                                                                     <  1:3006813/112‑1 (MQ=255)
                                                                                   gggCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGTAGATCGGTACGGTGAAGACGACGCTGCTGACCgatga                                                               <  2:2093537/150‑1 (MQ=255)
                                                                                    ggCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCgatgat                                                              >  2:3584669/1‑150 (MQ=255)
                                                                                     gCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGTCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGatgatg                                                             <  2:4137619/150‑1 (MQ=255)
                                                                                     gCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGatgatg                                                             <  1:2929876/150‑1 (MQ=255)
                                                                                      ccTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATgg                                                            >  2:2848670/1‑150 (MQ=255)
                                                                                         tGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGa                                                         >  1:3765170/1‑150 (MQ=255)
                                                                                         tGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGa                                                         >  2:2626921/1‑150 (MQ=255)
                                                                                          ggCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGaa                                                        <  2:281979/150‑1 (MQ=255)
                                                                                           gCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGacgacg                                                                             <  1:4726310/128‑1 (MQ=255)
                                                                                           gCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGacgacg                                                                             >  2:4726310/1‑128 (MQ=255)
                                                                                           gCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAAc                                                       >  1:4649611/1‑150 (MQ=255)
                                                                                            ctgTCGCGAAATTGCCGGGCTGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGCCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGTCGCTGCTGACCGATGATGGCGAACt                                                      <  1:69644/148‑1 (MQ=255)
                                                                                             aGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTg                                                     >  2:2019/1‑150 (MQ=255)
                                                                                             aGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTg                                                     <  2:2198294/150‑1 (MQ=255)
                                                                                               tCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGgt                                                   <  2:5293473/150‑1 (MQ=255)
                                                                                               tCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGgt                                                   <  2:2242533/150‑1 (MQ=255)
                                                                                                 gcgAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGgtgt                                                 >  1:2448518/1‑150 (MQ=255)
                                                                                                 gcgAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGgtgt                                                 >  2:4206844/1‑150 (MQ=255)
                                                                                                 gcgAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGgtgt                                                 <  1:2520723/150‑1 (MQ=255)
                                                                                                 gcgAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGgtgt                                                 >  1:2043280/1‑150 (MQ=255)
                                                                                                 gcgAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGAGTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGgtgt                                                 >  2:3761121/1‑150 (MQ=255)
                                                                                                   gAAATTGCCGGGCAGATCCAGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCa                                               >  2:157719/1‑150 (MQ=255)
                                                                                                          ccGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTa                                        >  1:5355511/1‑150 (MQ=255)
                                                                                                           cGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTaa                                       >  1:996438/1‑150 (MQ=255)
                                                                                                                aGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACcgcg                                  >  1:3111524/1‑150 (MQ=255)
                                                                                                                 gATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGa                                 <  2:4824352/150‑1 (MQ=255)
                                                                                                                 gATCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGa                                 <  2:2596306/150‑1 (MQ=255)
                                                                                                                   tCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAgc                               <  1:3434584/150‑1 (MQ=255)
                                                                                                                   tCCTGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAgc                               >  2:235737/1‑150 (MQ=255)
                                                                                                                      tGGCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAgctgc                            <  2:5015871/150‑1 (MQ=255)
                                                                                                                       ggCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAgctgct                           <  2:3690268/150‑1 (MQ=255)
                                                                                                                        gCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACgctgct                                                                        >  1:4505845/1‑104 (MQ=255)
                                                                                                                        gCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACgctgct                                                                        <  2:4505845/104‑1 (MQ=255)
                                                                                                                        gCCGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCtt                          <  2:4351099/150‑1 (MQ=255)
                                                                                                                         ccGGCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTg                         <  2:1032147/150‑1 (MQ=255)
                                                                                                                           ggCATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGaa                       >  2:3246486/1‑150 (MQ=255)
                                                                                                                             cATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGaa                                                                                    <  2:5454461/87‑1 (MQ=255)
                                                                                                                             cATCTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACa                     <  1:1121572/150‑1 (MQ=255)
                                                                                                                                cTACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAgcg                  >  1:4717047/1‑150 (MQ=255)
                                                                                                                                 tACGTGCGCGAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAgcgc                 <  1:1037902/150‑1 (MQ=255)
                                                                                                                                        gcgAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATa          >  2:5222697/1‑150 (MQ=255)
                                                                                                                                        gcgAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATa          >  2:1034134/1‑150 (MQ=255)
                                                                                                                                          gAGCTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGc        <  1:1042987/150‑1 (MQ=255)
                                                                                                                                             cTGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGc     <  2:2963143/150‑1 (MQ=255)
                                                                                                                                              tGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCaa            <  2:1831240/142‑1 (MQ=255)
                                                                                                                                              tGTACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCaa            >  1:1831240/1‑142 (MQ=255)
                                                                                                                                                tACAAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTaa  >  1:3323301/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
CAGCTTGAAGTGAAAACCGACCTGCTGAACCACGTCATCGTTATCGGGCTGATTACCGTTGGTCTGGCCGTTGCCTTGGCCATGGGCCTTGGCAGTCGCGAAATTGCCGGGCAGATCCTGGCCGGCATCTACGTGCGCGAGCTGTACCAAGTCGGCCAGCAGGTGCGGATTGGAGAGGTCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAA  >  NC_002947/2384244‑2384537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A