Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A32 F90 I2 R1
|
29 |
376.5 |
16112962 |
96.0% |
15468443 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947 |
2,133,512 |
C→T |
intergenic (+18/+32) |
PP_1887 → / ← PP_1888 |
hypothetical protein/fimbrial protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947 | 2,133,512 | 0 | C | T | 98.8%
| 935.8
/ ‑1.5
| 252 | intergenic (+18/+32) | PP_1887/PP_1888 | hypothetical protein/fimbrial protein |
| Reads supporting (aligned to +/- strand): ref base C (3/0); new base T (110/139); total (113/139) |
| Fisher's exact test for biased strand distribution p-value = 8.88e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 |
Only 100 of 257 total aligned reads displayed.
GATGAGCAGGGGCGGGTACTGACGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGACGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGGAAGAAGCGGGCCTGAAAATTCAAAGGCACGTTATCGCT > NC_002947/2133366‑2133657
|
gatgaGCAGGGGCGGGTACTGACGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGcgatga > 1:3417462/1‑149 (MQ=255)
gatgaGCAGGGGCGGGTACTGACGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGcgatga > 1:6856038/1‑149 (MQ=255)
tgaGCAGGGGCGGGTACTGACGTATGACGGGCTCAACCATTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAgg > 2:7159134/1‑149 (MQ=255)
tgCAGGGGCGGGTACTGTCGTTTGACGGGCTCAACCGTTTGCTCATGGTCGTGACCGCTGACGGTGAACGCTGTCGCTTCATCTTTGACCGAGAGAACATTCTGTCCTGCACGGGCCCTGGCTAAGGGCACCGGGGGGGGGATGAGGcc < 2:7350509/148‑1 (MQ=255)
cgCAGGGGCGGGTACTGACGTATGACGGGCTCACCCGTGTGCGCAGGGTCGAGACCCCTGACGGTGAACGCTGGCGCTACAACTCTCACCCAGAGAACAGTCGGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGcc < 2:5584204/148‑1 (MQ=255)
aGCAGGGGCGGGTACTGACTTATGACGGGCTCAACCGTTTGCTCAGGTTCTATACCCCTTACGGTGAACGCTGTCGCTAAAACTATGACCCAGATAAAATTCTGTCCGGAACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGcc < 1:2166779/149‑1 (MQ=255)
aGCAGGGGCGGGTACTGACGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGcc < 1:4171629/149‑1 (MQ=255)
gCAGGGGCGGGTACTGACGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCg > 1:6792800/1‑149 (MQ=255)
aGGGGCGGGTACTGACGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGt > 2:2159818/1‑149 (MQ=255)
ggggCGGGTACTGACGTATGACGGGCTCTACCGGTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCTGGGTTGCGATTAGGCCGGta < 2:5670628/149‑1 (MQ=255)
cGGGTACTGACGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAgg > 2:2258513/1‑149 (MQ=255)
cGGGTACTGACGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAgg > 2:7872379/1‑149 (MQ=255)
ggTACTGACGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGa < 1:5619239/149‑1 (MQ=255)
ggTACTGACGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGa < 1:359180/149‑1 (MQ=255)
tACTGACGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGAcc < 2:6431829/149‑1 (MQ=255)
tACTGACGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGAcc < 1:1482328/149‑1 (MQ=255)
cTGACGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCgg < 2:2940284/149‑1 (MQ=255)
gACGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGcc > 2:7633361/1‑149 (MQ=255)
aCGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCCCCGGGGGGGCGATGAGGCCGGTCTCGGGACCGGccg > 2:6346648/1‑148 (MQ=255)
cGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCtc < 1:5948149/149‑1 (MQ=255)
gTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCtcg < 2:3725173/149‑1 (MQ=255)
tATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCtcgt < 1:3309541/149‑1 (MQ=255)
tATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCtcgt < 2:6923803/149‑1 (MQ=255)
aTGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCtcgtc > 1:7309913/1‑149 (MQ=255)
gACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGc < 2:276473/149‑1 (MQ=255)
cGGGCTCAACCGTTTGCTCAGTGTCGATACCACTGACGGTGATCGCTGTCGCTACTACTATTACCCAGAGAACATTCTGTCCGGCACGGCCCCTGTCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCTCAt < 2:7090609/149‑1 (MQ=255)
ggCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTc > 1:3495006/1‑149 (MQ=255)
ggCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTc > 1:1677320/1‑149 (MQ=255)
gCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCa < 2:911494/149‑1 (MQ=255)
cTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTCTGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAg > 2:1546582/1‑149 (MQ=255)
cAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCg < 1:2610578/149‑1 (MQ=255)
aCCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGt < 2:7496872/149‑1 (MQ=255)
aCCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGt > 1:5860179/1‑149 (MQ=255)
aCCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGt > 1:5900209/1‑149 (MQ=255)
aCCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGt < 1:841025/149‑1 (MQ=255)
cGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAg < 1:971691/149‑1 (MQ=255)
gTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGc < 1:4594048/149‑1 (MQ=255)
ttGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGa < 2:365031/149‑1 (MQ=255)
gCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTCTGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTGTAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAAt < 2:6830081/149‑1 (MQ=255)
gCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAAt < 2:4459791/149‑1 (MQ=255)
gCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAAt < 1:7644270/149‑1 (MQ=255)
cAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGTCAAGGCCCCTGGCTAAGGGCACAGGGGGGGCGATGGGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGt > 2:7204747/1‑149 (MQ=255)
cAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGt > 2:7434505/1‑149 (MQ=255)
cAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGt > 1:2957346/1‑149 (MQ=255)
gggTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGa > 2:6026882/1‑149 (MQ=255)
ggTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGaa < 1:1118645/149‑1 (MQ=255)
tCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGt < 1:6194610/149‑1 (MQ=255)
cGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGtt < 1:4828433/149‑1 (MQ=255)
cGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGtt < 1:5760198/149‑1 (MQ=255)
agaCCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCa < 2:4642002/149‑1 (MQ=255)
agaCCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCa < 2:2529287/149‑1 (MQ=255)
gaCCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCaa < 1:4498582/149‑1 (MQ=255)
gaCCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACAGTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCaa < 2:5555752/149‑1 (MQ=255)
ccTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCa > 2:5947767/1‑149 (MQ=255)
ggTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTg < 2:4107134/149‑1 (MQ=255)
ggTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTg < 2:1696349/149‑1 (MQ=255)
ggTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTg < 1:4726930/149‑1 (MQ=255)
gTGAACGCTGTCGCTTCAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTgg < 1:1927396/149‑1 (MQ=255)
gTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTgg < 1:5459707/149‑1 (MQ=255)
gTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTgg < 1:5991147/149‑1 (MQ=255)
aaCGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCa > 2:3468766/1‑149 (MQ=255)
aCGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCaa > 2:4267849/1‑149 (MQ=255)
aCGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCaa > 1:3869877/1‑149 (MQ=255)
cGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTAGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAg > 1:1036474/1‑149 (MQ=255)
cGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTg < 1:2377537/149‑1 (MQ=255)
cAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCAGTCAGCGGTAGCGACTGGTGAAGTTCAAGGCACCCTTGGCCCAGCCCGTGCGCAg > 2:7770996/1‑149 (MQ=255)
aaCTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAgg < 2:3352993/149‑1 (MQ=255)
aaCTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAgg > 1:464277/1‑149 (MQ=255)
aaCTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAgg > 2:2408864/1‑149 (MQ=255)
cTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGACTGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGgct > 1:4432271/1‑149 (MQ=255)
cTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGgct < 1:3061116/149‑1 (MQ=255)
cccAGAGAACGGTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGTGGCCGGTATAGGGACCGGCCTCGTCGCAGTCCGCGGTAGCGAATGGTGAAGTTCCAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGtt > 2:5837913/1‑149 (MQ=255)
ccAGCGAACCTTCTGTCCGGCCCGGCCCCGGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTAGAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTg < 1:2721679/149‑1 (MQ=255)
ccAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTg > 2:3182838/1‑149 (MQ=255)
cAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTgg > 1:6390095/1‑149 (MQ=255)
cAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTgg < 2:6945758/149‑1 (MQ=255)
agagAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTggg < 2:1207161/149‑1 (MQ=255)
gagaACAGTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGt < 2:4007872/149‑1 (MQ=255)
agaACACTCTGCCCGGCCCGGCCCCTGCCTACGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGtt < 1:7488922/149‑1 (MQ=255)
aaCATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTtct > 2:5524076/1‑149 (MQ=255)
aCATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTtctg < 2:8053693/149‑1 (MQ=255)
aCATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTtctg < 1:3701256/149‑1 (MQ=255)
aCATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTtctg < 1:2258513/149‑1 (MQ=255)
ttCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTtctgtct < 1:5114022/149‑1 (MQ=255)
tCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTtctgtctg < 2:56532/149‑1 (MQ=255)
cTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTgg > 2:5768168/1‑149 (MQ=255)
tGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGga < 2:391730/149‑1 (MQ=255)
gTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGgaa > 2:307222/1‑149 (MQ=255)
ggCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGGaagaag > 2:2972676/1‑149 (MQ=255)
ggCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGGaagaag < 2:7698839/149‑1 (MQ=255)
gCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGGAAGAAGc > 2:1762492/1‑149 (MQ=255)
gCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGGAAGAAGc < 1:1852845/149‑1 (MQ=255)
aCGGCCCCTGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGGAAGAAGCgg > 1:3351950/1‑149 (MQ=255)
tGGCTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGGAAGAAGCGGGCCTGaaa < 1:3792463/149‑1 (MQ=255)
cTAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGGAAGAAGCGGGCCTGAAAAtt > 2:3053389/1‑149 (MQ=255)
tAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGGAAGAAGCGGGCCTGAAAATTc < 1:2806649/149‑1 (MQ=255)
tAAGGGCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGGAAGAAGCGGGCCTGAAAATTc > 2:1102074/1‑149 (MQ=255)
ggCACCGGGGGGGCGATGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGGAAGAAGCGGGCCTGAAAATTCAAAg < 1:6424823/149‑1 (MQ=255)
tgaatgCGACGAGGCCGGTCCCTATACCGGCCTCATCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGGAAGAAGCGGGCCTGAAAATTCAAAGGCACGtt > 1:2145663/6‑149 (MQ=38)
tgaatgCGACGAGGCCGGTCCCTATACCGGCCTCATCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGGAAGAAGCGGGCCTGAAAATTCAAAGGCACGtt > 2:460942/6‑149 (MQ=38)
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GATGAGCAGGGGCGGGTACTGACGTATGACGGGCTCAACCGTTTGCTCAGGGTCGAGACCCCTGACGGTGAACGCTGTCGCTACAACTATGACCCAGAGAACATTCTGTCCGGCACGGCCCCTGGCTAAGGGCACCGGGGGGGCGACGAGGCCGGTATAGGGACCGGCCTCGTCGCATTCAGCGGTAGCGAATGGTGAAGTTCAAGGCACCCTTGGCCAAGCCCGTGCGCAGGCTGCTGTTGGGTTCTGTCTGGAAGAAGCGGGCCTGAAAATTCAAAGGCACGTTATCGCT > NC_002947/2133366‑2133657
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
