breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 188,837 C→T R316C (CGC→TGC)  PP_0165 → GGDEF domain‑containing protein
RA 233,545 C→T G548G (GGC→GGT PP_0180 → cytochrome c family protein
RA 476,133 A→T Q141L (CAG→CTG)  tsaD → tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
RA 1,011,323 +T intergenic (‑258/+192) PP_0871 ← / ← SBRG_Ecoli_galM glycine betaine/carnitine/choline ABC transporter permease/SBRG_Ecoli_galM
RA 1,163,121 C→T A100V (GCG→GTG)  gtsA → mannose/glucose ABC transporter substrate‑binding protein
RA 1,163,732 A→G N304D (AAC→GAC)  gtsA → mannose/glucose ABC transporter substrate‑binding protein
RA 1,185,783 (G)7→8 intergenic (‑51/‑120) PP_1033 ← / → cumA sulfatase domain‑containing protein/multicopper oxidase
MC JC 1,515,811 (33-bp)2→1 pseudogene (715‑747/1851 nt) PP_1325 ← putative lipoprotein
RA 1,560,509 C→T G99D (GGC→GAC)  PP_1366 ← transcriptional regulator MvaT
RA 1,828,233 A→C V671G (GTG→GGG)  mutS ← DNA mismatch repair protein MutS
RA 1,856,513 A→G D203G (GAT→GGT)  relA → ATP:GTP 3'‑pyrophosphotransferase
RA 2,133,512 C→T intergenic (+18/+32) PP_1887 → / ← PP_1888 hypothetical protein/fimbrial protein
RA 2,673,491 C→T N117N (AAC→AAT prpD → 2‑methylcitrate dehydratase
RA 3,311,259 C→G G188R (GGC→CGC)  PP_2907 ← two‑component system response regulator
RA 4,018,201 G→A intergenic (+144/‑36) mvaB → / → PP_mr44 hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA
RA 4,445,476 T→C intergenic (+141/‑398) PP_3935 → / → PP_3938 hypothetical protein/hypothetical protein
RA 4,640,692 A→T M20K (ATG→AAG)  uvrY ← BarA/UvrY two‑componenent system response regulator
RA 4,746,222 +C intergenic (+464/+288) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,746,224 A→G intergenic (+466/+286) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,746,226 C→T intergenic (+468/+284) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,746,229 C→T intergenic (+471/+281) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,746,232 C→G intergenic (+474/+278) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,746,234 2 bp→CT intergenic (+476/+275) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,746,248 C→T intergenic (+490/+262) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,746,250 A→C intergenic (+492/+260) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,746,253 2 bp→GC intergenic (+495/+256) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,983,564 (C)8→7 coding (30/696 nt) flgH ← flagellar L‑ring protein
RA 5,216,752 G→A A65A (GCC→GCT PP_4592 ← metal dependent hydrolase
RA 5,831,143 T→G T53P (ACC→CCC)  thiG ← thiazole synthase

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1285878 =0 (0.000)290 (0.790) 162/292 0.5 100% coding (322/573 nt) PP_5742 membrane protein
?NC_002947 = 1303482 NA (NA)intergenic (+386/+43) PP_1133/PP_1134 transposase/hypothetical protein
* ? NC_002947 = 12858791 (0.000)386 (1.060) 156/290 0.6 99.8% coding (323/573 nt) PP_5742 membrane protein
?NC_002947 2930421 = NA (NA)intergenic (‑177/+388) PP_2563/PP_2564 antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase