Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A32 F90 I0 R1 1898 316.0 13750914 96.0% 13200877 148.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,311,259 C→G 100% G188R (GGC→CGC)  PP_2907 ← two‑component system response regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,311,2590CG99.6% 952.7 / ‑4.7 266G188R (GGC→CGC) PP_2907two‑component system response regulator
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base G (124/141);  total (124/142)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 267 total aligned reads displayed.

CAGGCGGCTGGTAGAAGAACTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCCCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGTGTTGTCACCGCGGCGCGCCTCGTGGCTGA  >  NC_002947/3311112‑3311405
                                                                                                                                                   |                                                                                                                                                  
cagGCGGCTGGTAGAAGAACTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGcgcg                                                                                                                                                  <  1:1048529/150‑1 (MQ=255)
   gcggcTGGTAGAAGAACTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGAt                                                                                                                                               <  2:4377967/150‑1 (MQ=255)
       cTGGTAGAAGAACTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGaa                                                                                                                                           <  2:1911157/150‑1 (MQ=255)
       cTGGTAGAAGAACTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGaa                                                                                                                                           <  2:3916902/150‑1 (MQ=255)
       cTGGTAGAAGAACTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGaa                                                                                                                                           <  1:3225225/150‑1 (MQ=255)
        tGGTAGAAGAACTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAg                                                                                                                                          >  1:3073022/1‑150 (MQ=255)
         ggTAGAAGAACTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGt                                                                                                                                         <  1:3601682/150‑1 (MQ=255)
           tAGAAGAACTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGa                                                                                                                                       >  1:5729606/1‑150 (MQ=255)
           tAGAAGAACTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGa                                                                                                                                       <  1:6347577/150‑1 (MQ=255)
             gaagaaCTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATa                                                                                                                                     >  1:2719799/1‑150 (MQ=255)
              aagaaCTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAg                                                                                                                                    >  2:3718724/1‑150 (MQ=255)
                   cTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCa                                                                                                                               <  1:1983726/150‑1 (MQ=255)
                   cTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCa                                                                                                                               <  2:4673928/150‑1 (MQ=255)
                   cTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCa                                                                                                                               <  1:6451292/150‑1 (MQ=255)
                    tCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAg                                                                                                                              >  1:437479/1‑150 (MQ=255)
                    tCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAg                                                                                                                              >  2:550626/1‑150 (MQ=255)
                      cAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGAc                                                                                                                            >  1:1402785/1‑150 (MQ=255)
                           tttAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCt                                                                                                                       >  2:406622/1‑150 (MQ=255)
                           tttAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCt                                                                                                                       >  1:1909586/1‑150 (MQ=255)
                           tttAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCt                                                                                                                       >  1:4493149/1‑150 (MQ=255)
                            ttAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTc                                                                                                                      <  1:497965/150‑1 (MQ=255)
                                aCGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGaaa                                                                                                                  <  1:2981532/150‑1 (MQ=255)
                                aCGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGaaa                                                                                                                  <  2:3263734/150‑1 (MQ=255)
                                   ggTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAatc                                                                                                               <  2:2829739/150‑1 (MQ=255)
                                    gTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAatca                                                                                                              >  2:5332457/1‑150 (MQ=255)
                                     ttCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAatcat                                                                                                             >  2:3437713/1‑150 (MQ=255)
                                     ttCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAatcat                                                                                                             <  1:1464549/150‑1 (MQ=255)
                                        aGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTCATAGCCCCAGACTTCCTCGAAAatcatcat                                                                                                          >  1:328283/1‑150 (MQ=255)
                                          cAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATcc                                                                                                        <  2:4223294/150‑1 (MQ=255)
                                           aaTGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGCTCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCcg                                                                                                       >  2:1251630/1‑150 (MQ=255)
                                           aaTGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCcg                                                                                                       >  1:391962/1‑150 (MQ=255)
                                           aaTGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCcg                                                                                                       >  1:2147795/1‑150 (MQ=255)
                                             tGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCcgcg                                                                                                     <  2:987955/150‑1 (MQ=255)
                                             tGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCcgcg                                                                                                     <  2:5707121/150‑1 (MQ=255)
                                              ggCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGt                                                                                                    <  2:1090692/150‑1 (MQ=255)
                                               gCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTg                                                                                                   >  1:177462/1‑150 (MQ=255)
                                                 aTAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGAt                                                                                                 >  1:2317987/1‑150 (MQ=255)
                                                  tAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATc                                                                                                >  1:4258517/1‑150 (MQ=255)
                                                   aGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCa                                                                                               >  1:1857219/1‑150 (MQ=255)
                                                   aGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCa                                                                                               >  2:5766672/1‑150 (MQ=255)
                                                    gCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCAc                                                                                              <  2:6812886/150‑1 (MQ=255)
                                                     ccGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCAcc                                                                                             >  1:3421102/1‑150 (MQ=255)
                                                      cGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCt                                                                                            >  2:1291326/1‑150 (MQ=255)
                                                        gAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTgg                                                                                          <  1:6777623/150‑1 (MQ=255)
                                                          gCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGcc                                                                                        <  1:550626/150‑1 (MQ=255)
                                                          gCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCGTGCGCAGGCGGCCGATGTGCGCGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGcc                                                                                        <  2:3973039/150‑1 (MQ=255)
                                                             ccgtaccgtaCGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTg                                                                                           >  1:514819/1‑144 (MQ=255)
                                                              cgtaccgtacGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCtg                                                                                    >  1:4075072/1‑150 (MQ=255)
                                                               gtaccgtacGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCtgt                                                                                   >  2:303006/1‑150 (MQ=255)
                                                               gtaccgtacGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCtgt                                                                                   <  2:2178193/150‑1 (MQ=255)
                                                                taccgtacGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCtgtg                                                                                  <  2:3011905/150‑1 (MQ=255)
                                                                       cGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATc                                                                           <  1:2457010/150‑1 (MQ=255)
                                                                         gATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAg                                                                         <  1:259835/150‑1 (MQ=255)
                                                                          agcAGCGGCGCCGGGCCGGGTGAGTCGATCGTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATCGCCCCAGACGTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAgg                                                                        <  2:6470626/148‑1 (MQ=255)
                                                                                ggcgACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTcc                                                                  <  1:6745789/150‑1 (MQ=255)
                                                                                ggcgACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTcc                                                                  >  2:6121090/1‑150 (MQ=255)
                                                                                      tGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCagcagc                                                            >  1:1177368/1‑150 (MQ=255)
                                                                                        gCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCtt                                                          <  1:844924/150‑1 (MQ=255)
                                                                                        gCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCtt                                                          <  2:6332725/150‑1 (MQ=255)
                                                                                           gggTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTa                                                       >  2:936742/1‑150 (MQ=255)
                                                                                            ggTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTAc                                                      >  2:6558688/1‑150 (MQ=255)
                                                                                              tGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTc                                                    <  2:5162404/150‑1 (MQ=255)
                                                                                               gAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCg                                                   <  2:6741404/150‑1 (MQ=255)
                                                                                                 gTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGt                                                 <  1:494494/150‑1 (MQ=255)
                                                                                                  tCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTg                                                >  1:954460/1‑150 (MQ=255)
                                                                                                  tCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTg                                                <  2:4868324/150‑1 (MQ=255)
                                                                                                    gATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTggg                                              >  1:4354664/1‑150 (MQ=255)
                                                                                                     aTCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCAc                                                                                              >  1:3712645/1‑101 (MQ=255)
                                                                                                     aTCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGc                                             <  2:1738032/150‑1 (MQ=255)
                                                                                                     aTCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGc                                             <  2:5200272/150‑1 (MQ=255)
                                                                                                     aTCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGc                                             >  1:6588259/1‑150 (MQ=255)
                                                                                                      tcttctTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCa                                            <  1:3868262/150‑1 (MQ=255)
                                                                                                         tcttGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACa                                         <  1:5019310/150‑1 (MQ=255)
                                                                                                         tcttGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACa                                         <  1:3403911/150‑1 (MQ=255)
                                                                                                           ttGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACATCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAgg                                       >  1:936593/1‑150 (MQ=255)
                                                                                                             gcgcAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGtt                                     <  1:5922954/150‑1 (MQ=255)
                                                                                                               gcAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGa                                   <  2:5021749/150‑1 (MQ=255)
                                                                                                                cAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAg                                  <  1:5303970/150‑1 (MQ=255)
                                                                                                                cAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAg                                  <  2:736297/150‑1 (MQ=255)
                                                                                                                 aGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTg                                                                                           >  1:5187609/1‑92 (MQ=255)
                                                                                                                 aGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAgg                                 <  1:4527038/150‑1 (MQ=255)
                                                                                                                 aGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAgg                                 <  1:1608714/150‑1 (MQ=255)
                                                                                                                 aGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAgg                                 <  2:5997661/150‑1 (MQ=255)
                                                                                                                   gcggcCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCtgt                                                                                   <  2:2651430/98‑1 (MQ=255)
                                                                                                                   gcggcCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCtgt                                                                                   <  2:4152976/98‑1 (MQ=255)
                                                                                                                      gcCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGtgtt                            <  2:5362107/150‑1 (MQ=255)
                                                                                                                      gcCGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGtgtt                            <  1:2877404/150‑1 (MQ=255)
                                                                                                                       ccGATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGtgttg                           <  2:1630186/150‑1 (MQ=255)
                                                                                                                         gATGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGTGTTGTc                         >  2:2249688/1‑150 (MQ=255)
                                                                                                                          aTGTGCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGTGTTGTCa                        <  2:2318415/150‑1 (MQ=255)
                                                                                                                              gCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCgg                                                  <  1:4118241/120‑1 (MQ=255)
                                                                                                                              gCACGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGTGTTGTCACcgc                    >  2:4431061/1‑150 (MQ=255)
                                                                                                                                aCGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGTGTTGTCACCgcgg                  >  2:5653201/1‑150 (MQ=255)
                                                                                                                                aCGTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGTGTTGTCACCgcgg                  >  2:2131283/1‑150 (MQ=255)
                                                                                                                                  gTCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGTGTTGTCACCgcggcg                >  1:245622/1‑150 (MQ=255)
                                                                                                                                   tCGATCAGGTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGTGTTGTCACCGCGgcgc               <  2:1988865/150‑1 (MQ=255)
                                                                                                                                          ggTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGTGTTGTCACCGCGGCGCGCCTCGt        <  1:4786348/150‑1 (MQ=255)
                                                                                                                                           gTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGTGTTGTCACCGCGGCGCGCCTCGTg       <  1:3851429/150‑1 (MQ=255)
                                                                                                                                           gTTGGTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGTGTTGTCACCGCGGCGCGCCTCGTg       >  2:346598/1‑150 (MQ=255)
                                                                                                                                               gTGCGCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGTGTTGTCACCGCGGCGCGCCTCGTGGCTg   >  1:5172875/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
CAGGCGGCTGGTAGAAGAACTCCAGCCTTTAGACGGGTTCAGCAATGGCATAGCCGGAGCCCCGTACCGTACGGATCAGCGGCGACTGGCCGGGTGAGTCGATCTTCTTGCGCAGGCGGCCGATGTGCACGTCGATCAGGTTGGTGCCCGGATCGAAGTGATAGCCCCAGACTTCCTCGAAAATCATCATCCGCGTGATCACCTGGCCGCTGTGGCGCATCAGGTACTCCAGCAGCTTGTACTCGGTGGGCAACAGGTTGAGGGTGTTGTCACCGCGGCGCGCCTCGTGGCTGA  >  NC_002947/3311112‑3311405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A