breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	1,699	G→T	6.5%	P41Q (CCG→CAG)	parA ←	chromosome partition protein
RA	1,706	G→C	6.2%	L39V (CTC→GTC)	parA ←	chromosome partition protein
RA	1,707	G→C	6.2%	D38E (GAC→GAG)	parA ←	chromosome partition protein
RA	6,429	Δ1 bp	6.2%	intergenic (‑47/+42)	trmE ← / ← oxaA	GTPase/membrane protein insertase
RA	6,433:1	+T	6.4%	intergenic (‑51/+38)	trmE ← / ← oxaA	GTPase/membrane protein insertase
RA	26,837:1	+A	10.4%	intergenic (+33/+152)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	26,844	A→T	12.6%	intergenic (+40/+145)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	58,747	T→A	8.4%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	8.3%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	60,726	G→A	6.1%	intergenic (‑118/‑105)	PP_0051 ← / → PP_0052	sigma‑54 dependent transcriptional regulator/beta‑lactamase domain‑containing protein
RA	60,729	T→A	6.1%	intergenic (‑121/‑102)	PP_0051 ← / → PP_0052	sigma‑54 dependent transcriptional regulator/beta‑lactamase domain‑containing protein
RA	60,730	T→A	6.1%	intergenic (‑122/‑101)	PP_0051 ← / → PP_0052	sigma‑54 dependent transcriptional regulator/beta‑lactamase domain‑containing protein
RA	60,731	T→A	6.0%	intergenic (‑123/‑100)	PP_0051 ← / → PP_0052	sigma‑54 dependent transcriptional regulator/beta‑lactamase domain‑containing protein
RA	60,734	T→C	6.0%	intergenic (‑126/‑97)	PP_0051 ← / → PP_0052	sigma‑54 dependent transcriptional regulator/beta‑lactamase domain‑containing protein
RA	68,340	G→T	6.7%	intergenic (+28/+147)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,342	A→T	6.6%	intergenic (+30/+145)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,344	A→C	6.9%	intergenic (+32/+143)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,598	T→G	5.1%	P225P (CCA→CCC)	PP_0058 ←	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	85,066	T→C	7.8%	intergenic (+44/+86)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,074	A→G	7.9%	intergenic (+52/+78)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,077	T→G	9.4%	intergenic (+55/+75)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,078:1	+T	8.1%	intergenic (+56/+74)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,081	T→G	10.0%	intergenic (+59/+71)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,088	C→A	7.1%	intergenic (+66/+64)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,091	Δ1 bp	7.5%	intergenic (+69/+61)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,093	C→A	8.1%	intergenic (+71/+59)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,096	C→T	8.0%	intergenic (+74/+56)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,104	G→A	8.1%	intergenic (+82/+48)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	95,665	A→C	6.5%	intergenic (+57/+15)	PP_0087 → / ← PP_0088	hypothetical protein/alkanal monooxygenase
RA	97,592	G→T	6.4%	intergenic (+21/+15)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	97,594	A→C	7.8%	intergenic (+23/+13)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	100,116	T→G	5.2%	N98T (AAC→ACC)	PP_0094 ←	5'‑nucleotidase
RA	101,803	A→T	6.2%	K208M (AAG→ATG)	prlC →	oligopeptidase A
RA	104,876	G→C	8.2%	P345P (CCG→CCC)	PP_0099 →	hypothetical protein
RA	119,735	G→A	5.4%	G31G (GGC→GGT)	metN ←	methionine ABC transporter ATP‑binding protein
RA	119,741	T→G	5.5%	E29D (GAA→GAC) ‡	metN ←	methionine ABC transporter ATP‑binding protein
RA	119,742	T→A	5.4%	E29V (GAA→GTA) ‡	metN ←	methionine ABC transporter ATP‑binding protein
RA	119,743	C→A	5.1%	E29* (GAA→TAA) ‡	metN ←	methionine ABC transporter ATP‑binding protein
RA	119,749	T→C	5.4%	T27A (ACC→GCC)	metN ←	methionine ABC transporter ATP‑binding protein
RA	126,115	A→G	6.5%	intergenic (+25/+25)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	126,116	C→T	6.5%	intergenic (+26/+24)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	149,649	G→C	5.1%	R57R (CGC→CGG) ‡	PP_0141 ←	ABC transporter ATP‑binding protein
RA	149,650	C→G	5.1%	R57P (CGC→CCC) ‡	PP_0141 ←	ABC transporter ATP‑binding protein
RA	149,651	G→C	5.1%	R57G (CGC→GGC) ‡	PP_0141 ←	ABC transporter ATP‑binding protein
RA	149,653	A→G	5.3%	L56P (CTG→CCG)	PP_0141 ←	ABC transporter ATP‑binding protein
RA	161,733	A→C	16.2%	intergenic (‑228/+18)	PP_0152 ← / ← PP_0153	hypothetical protein/hypothetical protein
RA	162,281	A→T	6.8%	intergenic (‑315/+59)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	162,282	A→T	6.8%	intergenic (‑316/+58)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	162,292	G→T	5.1%	intergenic (‑326/+48)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	170,839	T→G	5.7%	intergenic (+20/‑550)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	170,841	A→C	5.5%	intergenic (+22/‑548)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	181,805	T→C	9.2%	intergenic (+19/‑87)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,811	C→T	8.4%	intergenic (+25/‑81)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,812	A→G	8.9%	intergenic (+26/‑80)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,818	G→A	8.3%	intergenic (+32/‑74)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	182,034	G→A	6.9%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,035	A→T	6.9%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036	T→C	6.9%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	188,837	C→T	100%	R316C (CGC→TGC)	PP_0165 →	GGDEF domain‑containing protein
RA	189,893	A→C	5.6%	intergenic (+55/+102)	PP_0165 → / ← PP_0166	GGDEF domain‑containing protein/HlyD family secretion protein
RA	195,559	C→A	28.2%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	8.4%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	8.6%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	42.1%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	18.0%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	19.1%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,340	Δ1 bp	59.2%	coding (1846/26049 nt)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	22.5%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	20.9%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	196,795	G→C	13.9%	T767T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,879	G→A	24.4%	V795V (GTG→GTA)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	5.8%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	11.6%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	7.4%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,185	C→T	6.4%	T897T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	13.1%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	18.3%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	20.1%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	19.3%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	10.7%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	202,062	T→A	6.4%	L2523Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	212,560	T→A	5.3%	V6022V (GTT→GTA)	PP_0168 →	putative surface adhesion protein
RA	233,545	C→T	100%	G548G (GGC→GGT)	PP_0180 →	cytochrome c family protein
RA	243,967	T→C	5.5%	Q68Q (CAA→CAG) ‡	fkl ←	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	243,968	T→A	5.7%	Q68L (CAA→CTA) ‡	fkl ←	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	243,969	G→A	5.5%	Q68* (CAA→TAA) ‡	fkl ←	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	251,254	T→G	9.5%	intergenic (‑52/‑14)	nfeD ← / → PP_0201	membrane bound peptidase NefD/hypothetical protein
RA	253,348	T→C	6.1%	intergenic (‑133/+38)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,356	C→T	6.8%	intergenic (‑141/+30)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,358	A→T	6.9%	intergenic (‑143/+28)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,359	A→T	6.9%	intergenic (‑144/+27)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,361	A→G	6.9%	intergenic (‑146/+25)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,369	G→A	5.3%	intergenic (‑154/+17)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	284,587	T→A	17.7%	intergenic (+33/+30)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	284,588	T→A	17.2%	intergenic (+34/+29)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	295,676	T→C	7.4%	intergenic (+23/+119)	PP_0241 → / ← PP_0242	transporter/TetR family transcriptional regulator
RA	295,681	T→G	7.6%	intergenic (+28/+114)	PP_0241 → / ← PP_0242	transporter/TetR family transcriptional regulator
RA	322,135	G→A	20.6%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,142	T→C	22.0%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	325,161	C→G	5.1%	P149A (CCA→GCA)	oprQ →	outer‑membrane porin D
RA	334,946	T→G	5.1%	intergenic (‑259/+29)	PP_0276 ← / ← PP_t73	Cro/CI family transcriptional regulator/tRNA‑Thr
RA	335,435	C→T	5.2%	intergenic (‑38/+166)	PP_0277 ← / ← PP_5437	hypothetical protein/hypothetical protein
RA	335,436	A→T	5.0%	intergenic (‑39/+165)	PP_0277 ← / ← PP_5437	hypothetical protein/hypothetical protein
RA	335,437	A→G	5.1%	intergenic (‑40/+164)	PP_0277 ← / ← PP_5437	hypothetical protein/hypothetical protein
RA	336,291	T→A	5.3%	intergenic (+136/+257)	PP_0278 → / ← PP_0279	hypothetical protein/hypothetical protein
RA	337,812	A→G	26.5%	intergenic (‑59/+70)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,819:1	+A	23.9%	intergenic (‑66/+63)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,822	A→C	23.5%	intergenic (‑69/+60)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,825	C→G	23.3%	intergenic (‑72/+57)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,828	G→T	25.0%	intergenic (‑75/+54)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,830	Δ1 bp	23.3%	intergenic (‑77/+52)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,839	C→T	27.0%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	341,299	T→C	5.2%	intergenic (‑190/‑188)	PP_5438 ← / → gabP‑I	hypothetical protein/gamma‑aminobutyrate permease
RA	341,303	G→T	5.3%	intergenic (‑194/‑184)	PP_5438 ← / → gabP‑I	hypothetical protein/gamma‑aminobutyrate permease
RA	341,304	C→G	5.3%	intergenic (‑195/‑183)	PP_5438 ← / → gabP‑I	hypothetical protein/gamma‑aminobutyrate permease
RA	341,305	A→C	5.2%	intergenic (‑196/‑182)	PP_5438 ← / → gabP‑I	hypothetical protein/gamma‑aminobutyrate permease
RA	341,309	G→A	5.2%	intergenic (‑200/‑178)	PP_5438 ← / → gabP‑I	hypothetical protein/gamma‑aminobutyrate permease
RA	343,610	T→A	5.9%	intergenic (‑163/‑77)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,611	G→C	6.3%	intergenic (‑164/‑76)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,612	T→A	6.0%	intergenic (‑165/‑75)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	344,044	Δ1 bp	6.1%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,048:1	+T	5.9%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	353,105	T→G	11.0%	intergenic (+69/+49)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	358,088	A→G	26.9%	intergenic (+53/‑77)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,090	C→T	26.2%	intergenic (+55/‑75)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,093	T→C	28.4%	intergenic (+58/‑72)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,094	G→A	28.3%	intergenic (+59/‑71)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,097	A→G	28.8%	intergenic (+62/‑68)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,099	C→T	27.4%	intergenic (+64/‑66)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	372,660	C→G	5.0%	intergenic (+77/‑102)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,666	C→T	5.1%	intergenic (+83/‑96)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,668	T→A	5.3%	intergenic (+85/‑94)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,673	G→T	5.1%	intergenic (+90/‑89)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	380,907	T→C	6.2%	intergenic (+94/+15)	gbcB → / ← PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
RA	385,478	A→C	6.6%	intergenic (+15/+20)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	385,479	C→G	7.0%	intergenic (+16/+19)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	395,849	C→A	5.4%	intergenic (+28/+176)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	403,280	G→T	6.2%	intergenic (‑80/+89)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	403,290	T→C	8.6%	intergenic (‑90/+79)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	427,755	A→C	5.9%	L16R (CTG→CGG) ‡	PP_0350 ←	ferrichrome‑iron receptor
RA	427,756	G→T	6.2%	L16M (CTG→ATG) ‡	PP_0350 ←	ferrichrome‑iron receptor
RA	432,996	A→T	7.7%	intergenic (+18/+29)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,997	A→T	7.7%	intergenic (+19/+28)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,998	A→T	7.8%	intergenic (+20/+27)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	445,077	C→G	8.3%	intergenic (+47/‑241)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,089	T→G	14.6%	intergenic (+59/‑229)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,090	G→A	14.3%	intergenic (+60/‑228)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,091	C→G	15.0%	intergenic (+61/‑227)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,093	T→C	21.1%	intergenic (+63/‑225)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,098	T→C	27.8%	intergenic (+68/‑220)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,108	A→T	34.0%	intergenic (+78/‑210)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,110	T→G	28.1%	intergenic (+80/‑208)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,115	C→G	8.0%	intergenic (+85/‑203)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,118	G→A	21.0%	intergenic (+88/‑200)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,120	C→G	9.0%	intergenic (+90/‑198)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,123	G→A	19.9%	intergenic (+93/‑195)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,125	C→G	18.0%	intergenic (+95/‑193)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,126	T→C	18.2%	intergenic (+96/‑192)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,127	C→A	16.8%	intergenic (+97/‑191)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	464,323	G→C	6.8%	H259Q (CAC→CAG) ‡	davB ←	lysine 2‑monooxygenase
RA	464,324	T→A	6.8%	H259L (CAC→CTC) ‡	davB ←	lysine 2‑monooxygenase
RA	464,325	G→C	6.8%	H259D (CAC→GAC) ‡	davB ←	lysine 2‑monooxygenase
RA	471,069	T→C	7.3%	intergenic (‑110/+18)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	471,070	G→A	7.0%	intergenic (‑111/+17)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	476,133	A→T	100%	Q141L (CAG→CTG)	tsaD →	tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
RA	478,316	A→T	7.7%	intergenic (+61/+49)	PP_0393 → / ← cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
RA	478,339	G→T	12.5%	intergenic (+84/+26)	PP_0393 → / ← cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
RA	479,496	A→G	5.6%	intergenic (‑25/+31)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,505	C→T	5.2%	intergenic (‑34/+22)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	488,171	C→T	5.1%	R45Q (CGG→CAG)	pdxA ←	4‑hydroxythreonine‑4‑phosphate dehydrogenase
RA	488,177	G→C	5.3%	A43G (GCC→GGC)	pdxA ←	4‑hydroxythreonine‑4‑phosphate dehydrogenase
RA	499,221	C→G	7.0%	intergenic (+62/‑234)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	503,828	Δ1 bp	11.7%	intergenic (+28/‑123)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,834	A→T	14.9%	intergenic (+34/‑117)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,835	A→T	14.6%	intergenic (+35/‑116)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,840:1	+C	13.0%	intergenic (+40/‑111)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	514,014	G→T	6.4%	intergenic (+45/+32)	yhfA → / ← PP_0426	hypothetical protein/membrane protein
RA	514,015	A→C	6.4%	intergenic (+46/+31)	yhfA → / ← PP_0426	hypothetical protein/membrane protein
RA	524,178	A→C	7.5%	intergenic (+42/‑774)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,339	A→G	6.2%	intergenic (+203/‑613)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,352	G→C	8.4%	intergenic (+216/‑600)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,355	G→C	8.3%	intergenic (+219/‑597)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,368	C→T	7.3%	intergenic (+232/‑584)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	546,005	G→A	7.1%	intergenic (+42/‑31)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,010	G→T	5.7%	intergenic (+47/‑26)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,011	A→T	5.6%	intergenic (+48/‑25)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,012	A→C	5.8%	intergenic (+49/‑24)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,017	T→C	5.7%	intergenic (+54/‑19)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	550,552	C→G	6.5%	intergenic (+30/‑112)	tufB → / → rpsJ	elongation factor Tu‑B/30S ribosomal protein S10
RA	556,981	C→T	5.0%	R9R (CGC→CGT)	rpsN →	30S ribosomal protein S14
RA	556,989	A→C	6.5%	K12T (AAG→ACG)	rpsN →	30S ribosomal protein S14
RA	556,992	G→T	6.1%	R13L (CGT→CTT)	rpsN →	30S ribosomal protein S14
RA	557,000	A→G	5.9%	T16A (ACG→GCG)	rpsN →	30S ribosomal protein S14
RA	557,335	Δ1 bp	6.9%	intergenic (+75/‑134)	rpsN → / → rpsH	30S ribosomal protein S14/30S ribosomal protein S8
RA	557,339:1	+A	7.2%	intergenic (+79/‑130)	rpsN → / → rpsH	30S ribosomal protein S14/30S ribosomal protein S8
RA	565,989	T→A	5.0%	intergenic (+26/‑138)	katA → / → bfr‑I	catalase/bacterioferritin
RA	565,990	C→A	5.0%	intergenic (+27/‑137)	katA → / → bfr‑I	catalase/bacterioferritin
RA	565,993	T→G	5.2%	intergenic (+30/‑134)	katA → / → bfr‑I	catalase/bacterioferritin
RA	565,994	T→A	5.2%	intergenic (+31/‑133)	katA → / → bfr‑I	catalase/bacterioferritin
RA	566,623	C→T	9.1%	intergenic (+32/+41)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,627	A→G	8.2%	intergenic (+36/+37)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,628	T→A	8.4%	intergenic (+37/+36)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,629	C→T	8.1%	intergenic (+38/+35)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,633	A→G	8.1%	intergenic (+42/+31)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	571,217	G→C	5.2%	K62N (AAG→AAC)	ssb →	single‑stranded DNA‑binding protein
RA	593,437	A→C	8.3%	E391A (GAG→GCG)	PP_0503 →	MFS transporter
RA	609,782	A→C	6.1%	L356R (CTG→CGG) ‡	PP_0525 ←	B12 family TonB‑dependent receptor
RA	609,783	G→T	6.1%	L356M (CTG→ATG) ‡	PP_0525 ←	B12 family TonB‑dependent receptor
RA	625,065	C→T	6.1%	intergenic (‑156/+27)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,066	A→T	6.2%	intergenic (‑157/+26)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,067	A→T	6.2%	intergenic (‑158/+25)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,068	A→G	6.2%	intergenic (‑159/+24)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	634,122	A→T	7.2%	Q142L (CAG→CTG)	PP_0546 →	sigma‑54 dependent transcriptional regulator
RA	640,686	A→T	5.1%	L21* (TTG→TAG) ‡	PP_0551 ←	MORN domain‑containing protein
RA	640,687	A→T	5.1%	L21M (TTG→ATG) ‡	PP_0551 ←	MORN domain‑containing protein
RA	640,688	A→T	5.1%	A20A (GCT→GCA)	PP_0551 ←	MORN domain‑containing protein
RA	646,605	C→T	5.1%	A75A (GCC→GCT)	acoR →	acetoin catabolism regulatory protein
RA	646,606	A→G	5.1%	S76G (AGC→GGC)	acoR →	acetoin catabolism regulatory protein
RA	648,250	A→T	7.8%	intergenic (+16/+75)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,290	A→C	8.6%	intergenic (+56/+35)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,292	A→T	6.2%	intergenic (+58/+33)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,294	G→T	5.9%	intergenic (+60/+31)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	650,848	T→A	5.1%	intergenic (‑134/+46)	aroQ‑I ← / ← dsbD‑I	type II 3‑dehydroquinate dehydratase/thiol/disulfide interchange protein 1
RA	650,851	A→T	5.1%	intergenic (‑137/+43)	aroQ‑I ← / ← dsbD‑I	type II 3‑dehydroquinate dehydratase/thiol/disulfide interchange protein 1
RA	654,406	T→G	5.0%	K114Q (AAG→CAG)	ctpL ←	methyl‑accepting chemotaxis protein CtpL
RA	661,506	T→G	6.0%	intergenic (+13/+114)	PP_0568 → / ← PP_0569	hypothetical protein/MATE efflux family protein
RA	661,507	T→A	5.5%	intergenic (+14/+113)	PP_0568 → / ← PP_0569	hypothetical protein/MATE efflux family protein
RA	661,508	C→A	5.7%	intergenic (+15/+112)	PP_0568 → / ← PP_0569	hypothetical protein/MATE efflux family protein
RA	675,590	A→T	6.2%	C38S (TGC→AGC)	PP_0577 ←	hypothetical protein
RA	675,592	C→G	6.3%	G37A (GGC→GCC)	PP_0577 ←	hypothetical protein
RA	675,594	A→T	6.4%	A36A (GCT→GCA)	PP_0577 ←	hypothetical protein
RA	697,217	T→C	10.7%	intergenic (+141/‑610)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,228	C→G	16.0%	intergenic (+152/‑599)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,231	C→G	16.1%	intergenic (+155/‑596)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,242	G→A	8.8%	intergenic (+166/‑585)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,253	G→A	5.2%	intergenic (+177/‑574)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	699,725	A→G	43.1%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,767	T→G	10.1%	intergenic (+12/‑120)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,768	A→T	10.0%	intergenic (+13/‑119)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,769	C→A	10.0%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	709,998	T→G	16.6%	V247G (GTT→GGT)	ribF →	bifunctional riboflavin kinase/FMN adenylyltransferase
RA	715,012:1	+T	5.4%	intergenic (+75/+2)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	715,019	Δ1 bp	5.5%	coding (478/483 nt)	PP_0607 ←	type IV pili biogenesis protein FimT
RA	726,846	T→G	6.8%	intergenic (‑90/+177)	PP_0620 ← / ← PP_0621	GntR family transcriptional regulator/hypothetical protein
RA	727,318	C→T	5.3%	W6* (TGG→TAG) ‡	PP_0621 ←	hypothetical protein
RA	727,319	A→T	5.2%	W6R (TGG→AGG) ‡	PP_0621 ←	hypothetical protein
RA	727,320	A→G	5.2%	P5P (CCT→CCC)	PP_0621 ←	hypothetical protein
RA	743,442	T→G	5.9%	intergenic (+118/+156)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,443	T→A	5.5%	intergenic (+119/+155)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,444	C→A	5.6%	intergenic (+120/+154)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	772,181	T→C	8.6%	intergenic (+39/‑160)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,182	T→G	8.6%	intergenic (+40/‑159)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,185	C→A	8.5%	intergenic (+43/‑156)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,186	G→A	8.6%	intergenic (+44/‑155)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	780,559	A→C	8.1%	intergenic (‑86/+36)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	780,561	T→A	8.1%	intergenic (‑88/+34)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	780,563	G→T	7.9%	intergenic (‑90/+32)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	788,584	C→A	7.6%	intergenic (+31/‑182)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,586	A→T	7.9%	intergenic (+33/‑180)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,587	A→T	7.8%	intergenic (+34/‑179)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,589	T→G	7.8%	intergenic (+36/‑177)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	794,952	T→A	5.4%	L364Q (CTG→CAG)	PP_0680 →	ATP‑dependent protease‑like protein
RA	798,665	C→A	6.1%	intergenic (+17/+10)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	798,666	C→G	7.0%	intergenic (+18/+9)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	798,667	T→G	10.0%	intergenic (+19/+8)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	802,773	T→C	7.5%	intergenic (+28/‑58)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,774	C→A	7.5%	intergenic (+29/‑57)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,775	T→G	7.5%	intergenic (+30/‑56)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,776	G→A	7.3%	intergenic (+31/‑55)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	813,203	T→G	5.5%	intergenic (+107/+24)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	813,204	T→C	5.5%	intergenic (+108/+23)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	813,205	G→A	5.4%	intergenic (+109/+22)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	813,206	C→A	5.3%	intergenic (+110/+21)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	817,403	A→G	5.0%	F256F (TTT→TTC)	PP_0703 ←	transmembrane sensor
RA	851,020	G→C	6.0%	intergenic (‑600/‑205)	pcs ← / → hemA	phosphatidylcholine synthase/glutamyl‑tRNA reductase
RA	863,383	A→C	14.3%	S172R (AGC→CGC)	hemH →	ferrochelatase
RA	863,901	T→A	5.7%	intergenic (+15/+21)	hemH → / ← uraA	ferrochelatase/uracil permease
RA	865,406	G→T	5.1%	A141A (GCC→GCA)	upp ←	uracil phosphoribosyltransferase
RA	867,950	A→C	11.5%	intergenic (+45/+132)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	867,985	T→G	9.4%	intergenic (+80/+97)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	867,998	A→G	6.4%	intergenic (+93/+84)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	867,999	T→C	5.7%	intergenic (+94/+83)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	873,421	G→A	5.4%	G18S (GGC→AGC)	PP_5457 →	hypothetical protein
RA	873,428	T→C	5.1%	L20P (CTT→CCT)	PP_5457 →	hypothetical protein
RA	874,541	C→T	5.3%	V39V (GTC→GTT)	PP_0759 →	hypothetical protein
RA	874,542	G→C	5.5%	E40Q (GAA→CAA) ‡	PP_0759 →	hypothetical protein
RA	874,543	A→G	5.3%	E40G (GAA→GGA) ‡	PP_0759 →	hypothetical protein
RA	876,018	G→C	5.4%	noncoding (105/142 nt)	PP_mr65 ←	YybP‑YkoY
RA	876,021	G→C	5.3%	noncoding (102/142 nt)	PP_mr65 ←	YybP‑YkoY
RA	883,809	T→G	8.7%	intergenic (+44/‑284)	PP_0766 → / → PP_0767	hypothetical protein/LuxR family transcriptional regulator
RA	883,810	C→A	8.2%	intergenic (+45/‑283)	PP_0766 → / → PP_0767	hypothetical protein/LuxR family transcriptional regulator
RA	895,201	G→C	5.2%	intergenic (+38/+26)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,204	T→C	5.5%	intergenic (+41/+23)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,210	G→C	5.9%	intergenic (+47/+17)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,213	G→C	6.0%	intergenic (+50/+14)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,219	G→A	5.8%	intergenic (+56/+8)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	919,675	G→C	6.4%	intergenic (‑143/+48)	PP_5458 ← / ← PP_0800	hypothetical protein/hypothetical protein
RA	924,322	T→C	7.3%	T292A (ACG→GCG)	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	924,323	C→G	7.5%	A291A (GCG→GCC) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	924,324	G→A	7.6%	A291V (GCG→GTG) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	939,928:1	+C	7.8%	coding (5697/18933 nt)	PP_0806 ←	surface adhesion protein
RA	939,935	C→G	7.0%	G1897A (GGC→GCC)	PP_0806 ←	surface adhesion protein
RA	955,152	A→G	26.0%	intergenic (+103/‑210)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,154	G→A	22.5%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	T→A	23.3%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,156	T→C	24.3%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,158	C→T	23.0%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	961,708	A→G	7.2%	V237A (GTC→GCC)	selD ←	selenide, water dikinase
RA	961,712	G→C	6.9%	L236V (CTG→GTG)	selD ←	selenide, water dikinase
RA	961,713	G→C	7.6%	H235Q (CAC→CAG)	selD ←	selenide, water dikinase
RA	961,717	C→T	7.2%	G234D (GGC→GAC)	selD ←	selenide, water dikinase
RA	968,881	A→C	6.2%	intergenic (‑311/+20)	PP_0831 ← / ← PP_t68	hypothetical protein/tRNA‑Leu
RA	970,240	T→G	6.8%	F29C (TTC→TGC) ‡	tgt →	queuine tRNA‑ribosyltransferase
RA	970,241	C→A	6.8%	F29L (TTC→TTA) ‡	tgt →	queuine tRNA‑ribosyltransferase
RA	972,118	T→A	5.2%	L136Q (CTG→CAG)	secD →	protein translocase subunit SecD
RA	975,290	A→T	6.5%	intergenic (+136/+33)	ycfJ → / ← suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
RA	975,291	A→T	6.4%	intergenic (+137/+32)	ycfJ → / ← suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
RA	980,752	T→G	5.5%	L64R (CTG→CGG)	hscB →	DnaJ‑like molecular chaperone
RA	980,758	G→C	5.6%	S66T (AGT→ACT)	hscB →	DnaJ‑like molecular chaperone
RA	980,764	C→A	5.7%	P68Q (CCG→CAG)	hscB →	DnaJ‑like molecular chaperone
RA	991,557	G→A	6.8%	G59D (GGT→GAT)	der →	GTPase Der
RA	991,560	T→C	7.3%	I60T (ATC→ACC)	der →	GTPase Der
RA	992,866	G→T	5.2%	intergenic (+21/‑131)	der → / → PP_0858	GTPase Der/methionine/glutamine aminotransferase
RA	992,868	A→T	5.1%	intergenic (+23/‑129)	der → / → PP_0858	GTPase Der/methionine/glutamine aminotransferase
RA	992,869	A→T	5.1%	intergenic (+24/‑128)	der → / → PP_0858	GTPase Der/methionine/glutamine aminotransferase
RA	994,950	T→A	5.2%	intergenic (+26/+99)	PP_0859 → / ← PP_0860	ketoglutaramate omega‑amidase/sulfite reductase flavoprotein subunit
RA	994,951	T→A	5.1%	intergenic (+27/+98)	PP_0859 → / ← PP_0860	ketoglutaramate omega‑amidase/sulfite reductase flavoprotein subunit
RA	1,011,323:1	+T	100%	intergenic (‑258/+192)	PP_0871 ← / ← SBRG_Ecoli_galM	glycine betaine/carnitine/choline ABC transporter permease/SBRG_Ecoli_galM
RA	1,018,163	A→G	5.1%	intergenic (+39/+92)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,164	C→T	5.1%	intergenic (+40/+91)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,180	A→T	30.9%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,186	C→A	35.5%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,187	A→T	36.3%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,193	G→C	38.0%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,194	G→C	38.5%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,200	A→T	39.7%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,201	T→G	38.6%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,207	A→T	34.7%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,030,259	A→T	6.5%	intergenic (‑161/+68)	opdP ← / ← dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
RA	1,030,282	T→G	7.2%	intergenic (‑184/+45)	opdP ← / ← dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
RA	1,030,736	T→G	6.3%	D395A (GAC→GCC)	dppA‑II ←	dipeptide ABC transporter substrate‑binding protein
RA	1,030,738	C→G	6.4%	A394A (GCG→GCC) ‡	dppA‑II ←	dipeptide ABC transporter substrate‑binding protein
RA	1,030,740	C→A	6.1%	A394S (GCG→TCG) ‡	dppA‑II ←	dipeptide ABC transporter substrate‑binding protein
RA	1,050,210	T→C	5.6%	intergenic (+31/+75)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,050,214	G→A	5.5%	intergenic (+35/+71)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,050,217	T→C	5.9%	intergenic (+38/+68)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,050,221	G→A	5.5%	intergenic (+42/+64)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,056,917	A→G	6.4%	L468L (TTG→CTG)	PP_0910 ←	hypothetical protein
RA	1,056,921	A→G	6.2%	A466A (GCT→GCC) ‡	PP_0910 ←	hypothetical protein
RA	1,056,922	G→C	6.4%	A466G (GCT→GGT) ‡	PP_0910 ←	hypothetical protein
RA	1,056,923	C→T	6.4%	A466T (GCT→ACT) ‡	PP_0910 ←	hypothetical protein
RA	1,056,927	C→T	6.5%	Q464Q (CAG→CAA)	PP_0910 ←	hypothetical protein
RA	1,075,190	G→A	5.3%	intergenic (+38/+106)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,075,191	G→T	5.4%	intergenic (+39/+105)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,075,214	G→C	15.2%	intergenic (+62/+82)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,075,217	G→C	15.3%	intergenic (+65/+79)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,091,451	G→A	5.0%	intergenic (+28/+30)	tldD → / ← PP_0941	microcin B17 maturation protease/ribosome associated protein
RA	1,091,456	T→C	5.3%	intergenic (+33/+25)	tldD → / ← PP_0941	microcin B17 maturation protease/ribosome associated protein
RA	1,109,511	G→A	6.2%	intergenic (+50/‑42)	murA → / → hisG	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase/ATP phosphoribosyltransferase
RA	1,109,512	A→T	6.0%	intergenic (+51/‑41)	murA → / → hisG	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase/ATP phosphoribosyltransferase
RA	1,109,513	T→C	5.9%	intergenic (+52/‑40)	murA → / → hisG	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase/ATP phosphoribosyltransferase
RA	1,119,900	G→A	6.7%	intergenic (‑140/+39)	rlmF ← / ← valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
RA	1,127,712	T→C	6.2%	intergenic (+29/+118)	PP_0983 → / ← PP_0984	membrane protein/membrane protein
RA	1,127,713	C→T	6.2%	intergenic (+30/+117)	PP_0983 → / ← PP_0984	membrane protein/membrane protein
RA	1,127,714	A→G	6.2%	intergenic (+31/+116)	PP_0983 → / ← PP_0984	membrane protein/membrane protein
RA	1,127,715	G→A	6.3%	intergenic (+32/+115)	PP_0983 → / ← PP_0984	membrane protein/membrane protein
RA	1,128,892	T→A	5.4%	intergenic (‑138/+83)	PP_mr13 ← / ← gcvT‑I	cspA regulatory region/aminomethyltransferase
RA	1,131,657	T→G	5.3%	D950A (GAC→GCC)	gcvP‑I ←	glycine dehydrogenase
RA	1,135,147	A→T	8.1%	intergenic (‑247/+57)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,140,568	T→G	6.1%	E454D (GAA→GAC) ‡	PP_0997 ←	sigma‑54 dependent transcriptional regulator/sensory box protein
RA	1,140,569	T→A	5.9%	E454V (GAA→GTA) ‡	PP_0997 ←	sigma‑54 dependent transcriptional regulator/sensory box protein
RA	1,140,570	C→A	5.7%	E454* (GAA→TAA) ‡	PP_0997 ←	sigma‑54 dependent transcriptional regulator/sensory box protein
RA	1,150,388	C→T	10.5%	intergenic (‑100/+41)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,150,395	G→A	11.4%	intergenic (‑107/+34)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,150,396	T→C	11.6%	intergenic (‑108/+33)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,150,403	A→G	11.2%	intergenic (‑115/+26)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,153,751	A→C	5.3%	L150R (CTT→CGT)	PP_1007 ←	transmembrane sensor
RA	1,161,303	A→C	6.6%	intergenic (+51/‑165)	PP_1013 → / → yihS	sensor histidine kinase/aldose‑ketose isomerase
RA	1,163,121	C→T	84.8%	A100V (GCG→GTG)	gtsA →	mannose/glucose ABC transporter substrate‑binding protein
RA	1,163,732	A→G	100%	N304D (AAC→GAC)	gtsA →	mannose/glucose ABC transporter substrate‑binding protein
RA	1,185,776:1	+G	100%	intergenic (‑44/‑127)	PP_1033 ← / → cumA	sulfatase domain‑containing protein/multicopper oxidase
RA	1,189,516	A→T	5.7%	intergenic (‑177/‑235)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,523	A→G	5.9%	intergenic (‑184/‑228)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,540	G→C	18.5%	intergenic (‑201/‑211)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,543	G→C	17.3%	intergenic (‑204/‑208)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,560	C→T	11.4%	intergenic (‑221/‑191)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,567	A→T	6.8%	intergenic (‑228/‑184)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,572	G→A	5.7%	intergenic (‑233/‑179)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,193,990	A→G	5.1%	intergenic (+25/+17)	PP_1038 → / ← tatC‑I	hypothetical protein/Sec‑independent protein translocase protein
RA	1,204,522	C→G	5.8%	A141G (GCC→GGC)	gspF →	protein secretion protein
RA	1,215,783	T→A	10.7%	intergenic (+18/+19)	ytnA → / ← PP_1060	amino acid permease YtnA/glutamate synthase large subunit
RA	1,215,784	T→A	9.9%	intergenic (+19/+18)	ytnA → / ← PP_1060	amino acid permease YtnA/glutamate synthase large subunit
RA	1,220,039	G→T	5.6%	Y625* (TAC→TAA) ‡	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,220,041	A→G	5.6%	Y625H (TAC→CAC) ‡	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,220,042	G→C	5.7%	D624E (GAC→GAG)	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,220,047	G→C	5.6%	L623V (CTC→GTC)	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,220,048	C→T	5.6%	L622L (TTG→TTA) ‡	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,220,050	A→C	5.7%	L622V (TTG→GTG) ‡	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,230,428	G→T	5.4%	intergenic (‑49/+97)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,230,435	A→C	5.2%	intergenic (‑56/+90)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,230,436	A→T	5.0%	intergenic (‑57/+89)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,230,437	G→T	5.4%	intergenic (‑58/+88)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,248,694	T→C	5.1%	intergenic (+28/+71)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,250,285	G→C	7.4%	A66A (GCC→GCG)	pyrC ←	dihydroorotase
RA	1,250,289	G→C	7.2%	P65R (CCG→CGG)	pyrC ←	dihydroorotase
RA	1,250,293	G→C	7.4%	R64G (CGC→GGC)	pyrC ←	dihydroorotase
RA	1,266,491:1	+T	5.9%	coding (1099/1116 nt)	PP_1104 ←	AotO‑related protein
RA	1,266,497	T→A	7.7%	S365C (AGC→TGC)	PP_1104 ←	AotO‑related protein
RA	1,266,503	Δ1 bp	7.1%	coding (1087/1116 nt)	PP_1104 ←	AotO‑related protein
RA	1,283,437	A→T	6.9%	intergenic (‑309/+254)	PP_5465 ← / ← PP_1117	hypothetical protein/hypothetical protein
RA	1,283,438	A→T	7.1%	intergenic (‑310/+253)	PP_5465 ← / ← PP_1117	hypothetical protein/hypothetical protein
RA	1,283,439	A→T	6.9%	intergenic (‑311/+252)	PP_5465 ← / ← PP_1117	hypothetical protein/hypothetical protein
RA	1,289,992	T→C	6.1%	L90L (TTG→CTG) ‡	PP_1122 →	OmpA family protein
RA	1,289,993	T→A	5.9%	L90* (TTG→TAG) ‡	PP_1122 →	OmpA family protein
RA	1,289,994	G→A	6.3%	L90L (TTG→TTA) ‡	PP_1122 →	OmpA family protein
RA	1,299,069	C→T	6.0%	intergenic (+15/+25)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,299,070	A→T	5.9%	intergenic (+16/+24)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,299,071	A→G	5.6%	intergenic (+17/+23)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,299,968	Δ1 bp	7.3%	intergenic (+29/+41)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,299,973	T→A	7.3%	intergenic (+34/+36)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,299,976	T→A	7.5%	intergenic (+37/+33)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,299,980:1	+T	7.0%	intergenic (+41/+29)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,332,076	C→T	53.0%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,352,119	T→A	9.4%	intergenic (‑272/+132)	udh ← / ← galP‑I	uronate dehydrogenase/porin‑like protein
RA	1,355,456	T→A	5.4%	K11N (AAA→AAT) ‡	PP_1176 ←	hypothetical protein
RA	1,355,457	T→A	5.4%	K11I (AAA→ATA) ‡	PP_1176 ←	hypothetical protein
RA	1,360,424	Δ1 bp	5.8%	intergenic (‑93/‑1)	nrdA ← / → PP_1180	ribonucleoside‑diphosphate reductase subunit alpha/hypothetical protein
RA	1,360,429:1	+T	6.0%	coding (5/264 nt)	PP_1180 →	hypothetical protein
RA	1,360,979	T→C	5.2%	intergenic (+291/‑101)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,360,985	A→G	5.5%	intergenic (+297/‑95)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,360,990	C→G	5.6%	intergenic (+302/‑90)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,360,995	G→C	5.5%	intergenic (+307/‑85)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,360,998	C→T	5.8%	intergenic (+310/‑82)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,381,276	A→T	14.0%	intergenic (+30/+19)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,381,277	G→C	14.3%	intergenic (+31/+18)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,381,278	A→T	14.3%	intergenic (+32/+17)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,385,677	G→T	5.5%	intergenic (‑110/+25)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,385,678	T→A	6.2%	intergenic (‑111/+24)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,385,679	T→A	5.2%	intergenic (‑112/+23)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,385,680	A→C	5.4%	intergenic (‑113/+22)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,388,575	G→A	5.4%	P471S (CCG→TCG)	proS ←	proline‑‑tRNA ligase
RA	1,388,576	A→C	5.6%	A470A (GCT→GCG)	proS ←	proline‑‑tRNA ligase
RA	1,388,580	A→C	5.6%	L469R (CTG→CGG) ‡	proS ←	proline‑‑tRNA ligase
RA	1,388,581	G→T	5.6%	L469M (CTG→ATG) ‡	proS ←	proline‑‑tRNA ligase
RA	1,388,585	G→T	5.6%	D467E (GAC→GAA) ‡	proS ←	proline‑‑tRNA ligase
RA	1,388,586	T→C	5.6%	D467G (GAC→GGC) ‡	proS ←	proline‑‑tRNA ligase
RA	1,394,901	C→G	5.1%	A23G (GCC→GGC)	PP_1212 →	hypothetical protein
RA	1,397,870	T→C	17.5%	intergenic (+85/‑101)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,872	A→G	17.5%	intergenic (+87/‑99)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,874	G→A	17.9%	intergenic (+89/‑97)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,876:1	+A	17.3%	intergenic (+91/‑95)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,882	C→G	18.7%	intergenic (+97/‑89)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,888	Δ1 bp	16.8%	intergenic (+103/‑83)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,891	T→C	17.0%	intergenic (+106/‑80)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,893	C→T	17.5%	intergenic (+108/‑78)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,895	G→A	17.3%	intergenic (+110/‑76)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,408,545	G→A	15.5%	intergenic (‑56/+25)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,408,546	T→C	15.6%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,414,061	A→T	10.9%	intergenic (+50/‑225)	PP_1230 → / → nadA	hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit
RA	1,414,073	A→T	12.7%	intergenic (+62/‑213)	PP_1230 → / → nadA	hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit
RA	1,414,084	C→A	6.2%	intergenic (+73/‑202)	PP_1230 → / → nadA	hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit
RA	1,421,817	G→A	5.5%	R37Q (CGG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,421,823	T→A	5.7%	L39Q (CTG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,421,829	T→C	5.4%	L41P (CTG→CCG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,422,283	Δ1 bp	5.2%	coding (576/759 nt)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,422,287:1	+A	5.2%	coding (580/759 nt)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,424,517	A→G	7.5%	intergenic (‑51/+86)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,424,544	T→G	5.4%	intergenic (‑78/+59)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,429,207	A→C	5.8%	E321A (GAG→GCG) ‡	PP_5467 →	hypothetical protein
RA	1,429,208	G→C	5.8%	E321D (GAG→GAC) ‡	PP_5467 →	hypothetical protein
RA	1,429,209	G→T	5.7%	A322S (GCT→TCT)	PP_5467 →	hypothetical protein
RA	1,448,094	C→G	13.1%	intergenic (‑76/+100)	ghrB ← / ← PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
RA	1,448,105	A→T	11.0%	intergenic (‑87/+89)	ghrB ← / ← PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
RA	1,450,341	G→C	5.5%	G337R (GGG→CGG) ‡	PP_1263 →	fusaric acid resistance protein
RA	1,450,342	G→C	5.9%	G337A (GGG→GCG) ‡	PP_1263 →	fusaric acid resistance protein
RA	1,450,343	G→C	5.5%	G337G (GGG→GGC) ‡	PP_1263 →	fusaric acid resistance protein
RA	1,452,632	T→A	5.9%	Y592N (TAT→AAT) ‡	PP_1264 →	fusaric acid resistance protein
RA	1,452,633	A→T	6.0%	Y592F (TAT→TTT) ‡	PP_1264 →	fusaric acid resistance protein
RA	1,452,634	T→A	6.0%	Y592* (TAT→TAA) ‡	PP_1264 →	fusaric acid resistance protein
RA	1,455,005	G→A	5.7%	R7C (CGC→TGC)	PP_1268 ←	HtrA suppressor protein SohA
RA	1,463,073	T→G	5.2%	intergenic (+17/+23)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,463,075	A→T	5.2%	intergenic (+19/+21)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,463,077	C→A	5.2%	intergenic (+21/+19)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,469,147	T→G	11.0%	Q476P (CAG→CCG)	algX ←	alginate biosynthesis protein AlgX
RA	1,469,154	T→A	5.2%	T474S (ACC→TCC)	algX ←	alginate biosynthesis protein AlgX
RA	1,469,156	T→G	10.6%	Q473P (CAG→CCG)	algX ←	alginate biosynthesis protein AlgX
RA	1,469,161	A→C	12.1%	P471P (CCT→CCG)	algX ←	alginate biosynthesis protein AlgX
RA	1,479,951	T→G	8.2%	intergenic (‑775/+26)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,479,952	C→A	8.1%	intergenic (‑776/+25)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,493,013	T→A	5.5%	K89M (AAG→ATG) ‡	degS ←	serine endoprotease DegS
RA	1,493,014	T→A	5.1%	K89* (AAG→TAG) ‡	degS ←	serine endoprotease DegS
RA	1,502,790	T→G	6.2%	M141R (ATG→AGG)	PP_1310 →	hypothetical protein
RA	1,504,447	C→G	6.3%	intergenic (+68/‑98)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,509,025	T→A	9.2%	intergenic (+34/‑229)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,509,026	T→A	8.9%	intergenic (+35/‑228)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,511,881	A→G	14.2%	intergenic (+44/‑73)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,511,885	G→A	15.5%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,511,888	T→C	15.8%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,511,892	C→T	16.2%	intergenic (+55/‑62)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,513,036	G→A	10.2%	intergenic (+17/+45)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,513,037	G→T	9.9%	intergenic (+18/+44)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,513,038	A→C	10.2%	intergenic (+19/+43)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,513,039	T→C	10.2%	intergenic (+20/+42)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
MC JC	1,515,769	Δ33 bp	100%	pseudogene (757‑789/1851 nt)	PP_1325 ←	putative lipoprotein
RA	1,525,982	T→A	5.5%	L83* (TTG→TAG)	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,525,988	C→G	5.3%	T85R (ACG→AGG)	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,539,870	G→A	12.0%	intergenic (+70/‑113)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,872	T→G	12.4%	intergenic (+72/‑111)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,874	C→T	12.6%	intergenic (+74/‑109)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,880	T→C	18.2%	intergenic (+80/‑103)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,884	C→T	18.0%	intergenic (+84/‑99)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,889	A→G	16.7%	intergenic (+89/‑94)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,893	G→A	17.2%	intergenic (+93/‑90)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,899	A→G	13.6%	intergenic (+99/‑84)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,901	C→A	12.6%	intergenic (+101/‑82)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,903	T→C	11.8%	intergenic (+103/‑80)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,910	G→A	8.5%	intergenic (+110/‑73)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,542,943	A→T	5.0%	intergenic (+14/+19)	PP_1348 → / ← pduO	MutT/nudix family protein/thiamine‑phosphate pyrophosphorylase/ATP:cob(I)alamin adenosyltransferase
RA	1,542,944	A→T	5.1%	intergenic (+15/+18)	PP_1348 → / ← pduO	MutT/nudix family protein/thiamine‑phosphate pyrophosphorylase/ATP:cob(I)alamin adenosyltransferase
RA	1,542,945	A→T	5.4%	intergenic (+16/+17)	PP_1348 → / ← pduO	MutT/nudix family protein/thiamine‑phosphate pyrophosphorylase/ATP:cob(I)alamin adenosyltransferase
RA	1,543,553	C→G	5.1%	V670L (GTG→CTG)	PP_1350 ←	two‑component system sensor histidine kinase/response regulator
RA	1,543,556	C→G	5.1%	A669P (GCG→CCG)	PP_1350 ←	two‑component system sensor histidine kinase/response regulator
RA	1,543,559	C→G	5.1%	A668P (GCG→CCG)	PP_1350 ←	two‑component system sensor histidine kinase/response regulator
RA	1,549,480	C→A	33.1%	intergenic (+48/+66)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,483	G→C	31.5%	intergenic (+51/+63)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,485	C→G	31.1%	intergenic (+53/+61)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,490	C→G	31.1%	intergenic (+58/+56)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,492	G→C	33.1%	intergenic (+60/+54)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,495	T→G	32.9%	intergenic (+63/+51)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,556,273	G→T	11.3%	intergenic (+41/+85)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,556,276	A→C	11.2%	intergenic (+44/+82)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,560,379	A→C	5.8%	intergenic (+26/+48)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,560,509	C→T	100%	G99D (GGC→GAC)	PP_1366 ←	transcriptional regulator MvaT
RA	1,567,160	T→G	5.4%	intergenic (‑79/‑90)	pctA ← / → PP_1372	methyl‑accepting chemotaxis protein PctA/hypothetical protein
RA	1,567,161	C→G	5.7%	intergenic (‑80/‑89)	pctA ← / → PP_1372	methyl‑accepting chemotaxis protein PctA/hypothetical protein
RA	1,567,162	C→A	5.7%	intergenic (‑81/‑88)	pctA ← / → PP_1372	methyl‑accepting chemotaxis protein PctA/hypothetical protein
RA	1,568,818	G→T	6.2%	intergenic (+93/+29)	PP_1372 → / ← pitB	hypothetical protein/phosphate transporter
RA	1,568,819	A→C	7.4%	intergenic (+94/+28)	PP_1372 → / ← pitB	hypothetical protein/phosphate transporter
RA	1,573,900	C→T	5.9%	intergenic (+46/‑281)	pcaK → / → pcaF‑I	4‑hydroxybenzoate transporter/beta‑ketoadipyl‑CoA thiolase
RA	1,573,903	A→G	5.8%	intergenic (+49/‑278)	pcaK → / → pcaF‑I	4‑hydroxybenzoate transporter/beta‑ketoadipyl‑CoA thiolase
RA	1,573,906	G→A	5.4%	intergenic (+52/‑275)	pcaK → / → pcaF‑I	4‑hydroxybenzoate transporter/beta‑ketoadipyl‑CoA thiolase
RA	1,575,429	A→C	8.1%	intergenic (+46/‑142)	pcaF‑I → / → pcaT	beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease
RA	1,580,189	G→A	5.2%	intergenic (‑184/+26)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,580,191	T→A	5.2%	intergenic (‑186/+24)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,580,192	T→A	5.2%	intergenic (‑187/+23)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,580,194	T→C	5.2%	intergenic (‑189/+21)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,596,973	C→A	11.9%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,596,978	T→G	12.7%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,597,596	A→C	11.9%	D67A (GAC→GCC)	PP_1397 →	hypothetical protein
RA	1,599,240	T→C	5.7%	T392A (ACC→GCC)	kgtP ←	alpha‑ketoglutarate permease
RA	1,599,241	G→A	6.3%	G391G (GGC→GGT)	kgtP ←	alpha‑ketoglutarate permease
RA	1,603,819	A→G	7.2%	intergenic (‑67/+64)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,822	C→G	7.5%	intergenic (‑70/+61)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,823	T→C	7.6%	intergenic (‑71/+60)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,824	G→A	7.6%	intergenic (‑72/+59)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,825	C→G	7.6%	intergenic (‑73/+58)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,828	C→T	7.5%	intergenic (‑76/+55)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,843	T→G	5.6%	intergenic (‑91/+40)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,611,398	A→T	7.3%	intergenic (‑157/+54)	PP_1407 ← / ← PP_t64	sulfate transporter/tRNA‑Gly
RA	1,611,399	A→T	7.3%	intergenic (‑158/+53)	PP_1407 ← / ← PP_t64	sulfate transporter/tRNA‑Gly
RA	1,630,198	G→T	7.8%	intergenic (+30/+27)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,630,199	A→C	16.7%	intergenic (+31/+26)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,642,306	T→C	10.5%	intergenic (+24/+42)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,316	A→T	16.6%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,317	A→T	16.1%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,327	G→A	12.2%	intergenic (+45/+21)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,333	A→G	7.8%	intergenic (+51/+15)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,335	C→T	6.0%	intergenic (+53/+13)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,644,556	A→G	14.8%	intergenic (‑155/‑156)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,566	C→T	16.8%	intergenic (‑165/‑146)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,567	G→T	17.5%	intergenic (‑166/‑145)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,571	G→A	16.7%	intergenic (‑170/‑141)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,572	T→C	16.2%	intergenic (‑171/‑140)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,576	A→C	15.8%	intergenic (‑175/‑136)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,577	A→G	16.0%	intergenic (‑176/‑135)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,587	C→T	13.5%	intergenic (‑186/‑125)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,647,255	G→A	8.6%	intergenic (‑92/+60)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,262	G→C	13.1%	intergenic (‑99/+53)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,268	G→C	11.3%	intergenic (‑105/+47)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,269	C→G	11.4%	intergenic (‑106/+46)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,270	G→C	10.6%	intergenic (‑107/+45)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,276	G→C	11.3%	intergenic (‑113/+39)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,283	T→C	7.3%	intergenic (‑120/+32)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,652,125	C→T	6.1%	G75S (GGC→AGC)	gcd ←	quinoprotein glucose dehydrogenase
RA	1,652,126	C→G	6.2%	L74L (CTG→CTC) ‡	gcd ←	quinoprotein glucose dehydrogenase
RA	1,652,127	A→G	6.1%	L74P (CTG→CCG) ‡	gcd ←	quinoprotein glucose dehydrogenase
RA	1,653,953	T→A	5.5%	intergenic (‑241/+55)	oprB‑II ← / ← PP_1446	carbohydrate‑selective porin/TonB‑dependent receptor
RA	1,680,371	G→C	5.2%	A183P (GCG→CCG) ‡	hom →	homoserine dehydrogenase
RA	1,680,372	C→G	5.2%	A183G (GCG→GGG) ‡	hom →	homoserine dehydrogenase
RA	1,682,620	A→G	5.5%	intergenic (+22/‑109)	thrC → / → PP_5471	threonine synthase/two‑component system response regulator
RA	1,682,621	G→C	5.8%	intergenic (+23/‑108)	thrC → / → PP_5471	threonine synthase/two‑component system response regulator
RA	1,682,622	C→T	5.5%	intergenic (+24/‑107)	thrC → / → PP_5471	threonine synthase/two‑component system response regulator
RA	1,686,549	A→C	13.6%	Y26S (TAC→TCC)	recJ →	ssDNA‑specific exonuclease RecJ
RA	1,687,926	A→G	5.9%	Q485R (CAG→CGG)	recJ →	ssDNA‑specific exonuclease RecJ
RA	1,688,239	C→G	8.3%	intergenic (+57/‑174)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,688,242	C→G	8.6%	intergenic (+60/‑171)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,696,120	A→C	13.7%	K26T (AAG→ACG)	PP_1487 →	hypothetical protein
RA	1,696,763	T→C	7.8%	intergenic (+39/‑132)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,696,764	C→G	7.6%	intergenic (+40/‑131)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,696,774	C→A	13.7%	intergenic (+50/‑121)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,696,777	T→G	14.6%	intergenic (+53/‑118)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,696,787	C→G	6.1%	intergenic (+63/‑108)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,696,788	G→A	5.6%	intergenic (+64/‑107)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,708,239	A→G	22.1%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,708,241	G→C	20.3%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,708,243	C→T	21.3%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,712,218	G→C	7.6%	intergenic (+45/+97)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,712,221	G→C	8.5%	intergenic (+48/+94)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,712,279:1	+A	5.2%	intergenic (+106/+36)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,712,284	Δ1 bp	5.0%	intergenic (+111/+31)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,717,071	A→C	12.0%	intergenic (+71/‑187)	ppc → / → adk	phosphoenolpyruvate carboxylase/adenylate kinase
RA	1,717,078	A→C	17.0%	intergenic (+78/‑180)	ppc → / → adk	phosphoenolpyruvate carboxylase/adenylate kinase
RA	1,717,942	T→A	5.8%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,717,943	T→A	5.5%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,730,407	A→C	7.7%	L62R (CTG→CGG)	PP_1519 ←	lipoprotein
RA	1,755,724	C→G	6.6%	A31G (GCC→GGC)	PP_1551 →	replication protein O
RA	1,756,070	T→G	5.7%	P146P (CCT→CCG)	PP_1551 →	replication protein O
RA	1,756,071	T→A	5.2%	S147T (TCG→ACG) ‡	PP_1551 →	replication protein O
RA	1,756,072	C→A	5.2%	S147* (TCG→TAG) ‡	PP_1551 →	replication protein O
RA	1,785,057	G→A	7.2%	intergenic (+25/+81)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
JC	1,785,058	Δ62 bp	10.6%	intergenic (+26/+19)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,813,071	T→A	5.6%	V44D (GTT→GAT)	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,813,079	A→C	6.4%	K47Q (AAG→CAG) ‡	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,813,080	A→T	6.3%	K47M (AAG→ATG) ‡	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,813,081	G→T	6.4%	K47N (AAG→AAT) ‡	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,813,089	T→A	6.2%	I50N (ATC→AAC)	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,815,326	T→G	11.8%	intergenic (+96/‑73)	eno → / → ftsB	enolase/cell division protein
RA	1,815,327	C→A	9.1%	intergenic (+97/‑72)	eno → / → ftsB	enolase/cell division protein
RA	1,825,966	Δ1 bp	100%	coding (738/1422 nt)	PP_1624 →	group II intron‑encoding maturase
RA	1,825,970	2 bp→CT	100%	coding (742‑743/1422 nt)	PP_1624 →	group II intron‑encoding maturase
RA	1,828,233	A→C	100%	V671G (GTG→GGG)	mutS ←	DNA mismatch repair protein MutS
RA	1,830,082	G→C	5.6%	R55G (CGC→GGC)	mutS ←	DNA mismatch repair protein MutS
RA	1,830,083	G→C	5.4%	A54A (GCC→GCG)	mutS ←	DNA mismatch repair protein MutS
RA	1,836,768	G→A	9.6%	R219Q (CGG→CAG)	yfiP →	hypothetical protein
RA	1,836,771	T→C	9.0%	L220P (CTG→CCG)	yfiP →	hypothetical protein
RA	1,840,637	T→C	5.1%	intergenic (‑88/+44)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,840,638	G→A	5.0%	intergenic (‑89/+43)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,843,087	T→G	6.1%	intergenic (+43/+61)	PP_1642 → / ← PP_1643	hypothetical protein/membrane protein
RA	1,843,088	A→T	5.6%	intergenic (+44/+60)	PP_1642 → / ← PP_1643	hypothetical protein/membrane protein
RA	1,843,090	T→C	6.0%	intergenic (+46/+58)	PP_1642 → / ← PP_1643	hypothetical protein/membrane protein
RA	1,843,091	C→T	6.1%	intergenic (+47/+57)	PP_1642 → / ← PP_1643	hypothetical protein/membrane protein
RA	1,843,096	C→A	5.9%	intergenic (+52/+52)	PP_1642 → / ← PP_1643	hypothetical protein/membrane protein
RA	1,843,098	C→G	6.1%	intergenic (+54/+50)	PP_1642 → / ← PP_1643	hypothetical protein/membrane protein
RA	1,843,099	A→C	6.6%	intergenic (+55/+49)	PP_1642 → / ← PP_1643	hypothetical protein/membrane protein
RA	1,843,106	G→T	5.7%	intergenic (+62/+42)	PP_1642 → / ← PP_1643	hypothetical protein/membrane protein
RA	1,843,107	C→G	5.7%	intergenic (+63/+41)	PP_1642 → / ← PP_1643	hypothetical protein/membrane protein
RA	1,843,109	T→G	6.7%	intergenic (+65/+39)	PP_1642 → / ← PP_1643	hypothetical protein/membrane protein
RA	1,843,114	A→G	5.3%	intergenic (+70/+34)	PP_1642 → / ← PP_1643	hypothetical protein/membrane protein
RA	1,843,115	G→A	5.2%	intergenic (+71/+33)	PP_1642 → / ← PP_1643	hypothetical protein/membrane protein
RA	1,843,117	A→T	5.2%	intergenic (+73/+31)	PP_1642 → / ← PP_1643	hypothetical protein/membrane protein
RA	1,843,118	C→A	5.1%	intergenic (+74/+30)	PP_1642 → / ← PP_1643	hypothetical protein/membrane protein
RA	1,843,133	G→A	6.6%	intergenic (+89/+15)	PP_1642 → / ← PP_1643	hypothetical protein/membrane protein
RA	1,850,774	T→C	5.3%	L25P (CTC→CCC)	pfeS‑II →	histidine kinase
RA	1,850,778	T→G	5.0%	S26R (AGT→AGG)	pfeS‑II →	histidine kinase
RA	1,850,783	C→A	5.2%	T28N (ACC→AAC)	pfeS‑II →	histidine kinase
RA	1,850,787	G→A	5.2%	W29* (TGG→TGA)	pfeS‑II →	histidine kinase
RA	1,856,513	A→G	100%	D203G (GAT→GGT)	relA →	ATP:GTP 3'‑pyrophosphotransferase
RA	1,864,099	C→G	6.3%	intergenic (+28/+73)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,864,105	A→T	6.9%	intergenic (+34/+67)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,864,111	C→G	6.9%	intergenic (+40/+61)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,875,136	G→T	5.2%	G112V (GGC→GTC)	cobD →	Subunit of adenosylcobinamide‑phosphate synthase beta component
RA	1,875,139	A→C	5.5%	D113A (GAC→GCC)	cobD →	Subunit of adenosylcobinamide‑phosphate synthase beta component
RA	1,877,623	T→C	5.8%	L306P (CTG→CCG)	cobQ →	adenosyl‑cobyric acid synthase
RA	1,877,628	G→T	5.6%	E308* (GAG→TAG) ‡	cobQ →	adenosyl‑cobyric acid synthase
RA	1,877,629	A→C	5.9%	E308A (GAG→GCG) ‡	cobQ →	adenosyl‑cobyric acid synthase
RA	1,877,634	G→A	5.9%	G310S (GGT→AGT)	cobQ →	adenosyl‑cobyric acid synthase
RA	1,897,517	C→G	6.7%	intergenic (+36/‑59)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,897,518	T→C	6.6%	intergenic (+37/‑58)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,897,519	G→A	6.6%	intergenic (+38/‑57)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,897,520	C→G	6.7%	intergenic (+39/‑56)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,902,167	C→T	5.5%	intergenic (‑29/+115)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,902,173	G→C	5.3%	intergenic (‑35/+109)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,902,174	G→C	5.6%	intergenic (‑36/+108)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,902,180	A→G	5.1%	intergenic (‑42/+102)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,902,194	G→T	7.6%	intergenic (‑56/+88)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,902,198	T→A	8.3%	intergenic (‑60/+84)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,902,202	A→C	8.0%	intergenic (‑64/+80)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,904,208	C→T	8.7%	intergenic (+287/‑233)	PP_t18 → / → PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
RA	1,911,706	T→A	5.9%	intergenic (+55/+73)	nirD → / ← PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA	1,911,733	A→C	6.8%	intergenic (+82/+46)	nirD → / ← PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA	1,920,589:1	+A	5.7%	intergenic (+26/‑263)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,920,593	T→A	5.4%	intergenic (+30/‑259)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,920,596	Δ1 bp	5.6%	intergenic (+33/‑256)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,926,540	T→A	15.2%	intergenic (+24/+37)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,926,541	T→A	15.7%	intergenic (+25/+36)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,937,594	T→A	9.9%	intergenic (‑70/+81)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,937,614	T→G	12.4%	intergenic (‑90/+61)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,947,358	T→A	6.9%	intergenic (+44/‑161)	betX → / → yjcH	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX/inner membrane protein
RA	1,947,361	T→C	5.2%	intergenic (+47/‑158)	betX → / → yjcH	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX/inner membrane protein
RA	1,952,787	C→G	9.8%	intergenic (‑56/+114)	PP_1748 ← / ← PP_1749	hypothetical protein/acetyltransferase
RA	1,952,865	G→C	6.1%	intergenic (‑134/+36)	PP_1748 ← / ← PP_1749	hypothetical protein/acetyltransferase
RA	1,960,201	T→A	8.9%	intergenic (+39/‑154)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,960,202	T→A	9.0%	intergenic (+40/‑153)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,972,153	T→A	6.0%	intergenic (+31/+88)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,154	T→A	6.5%	intergenic (+32/+87)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,170	A→C	6.4%	intergenic (+48/+71)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,171	T→A	6.6%	intergenic (+49/+70)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,172	C→G	6.0%	intergenic (+50/+69)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,173	A→G	5.7%	intergenic (+51/+68)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,180	C→T	7.4%	intergenic (+58/+61)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,184	C→T	6.4%	intergenic (+62/+57)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,185	A→G	6.5%	intergenic (+63/+56)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,189	A→G	7.6%	intergenic (+67/+52)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,198	T→A	6.8%	intergenic (+76/+43)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,980,978	T→A	5.7%	Y306* (TAT→TAA)	pheA →	bifunctional chorismate mutase/prephenate dehydratase
RA	1,998,594	G→T	14.1%	intergenic (+40/+58)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,998,595	C→G	14.0%	intergenic (+41/+57)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,998,596	A→C	14.1%	intergenic (+42/+56)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	2,009,562	G→A	6.5%	intergenic (+60/+90)	PP_1787 → / ← PP_1788	hypothetical protein/hypothetical protein
RA	2,009,565	T→C	6.5%	intergenic (+63/+87)	PP_1787 → / ← PP_1788	hypothetical protein/hypothetical protein
RA	2,026,479	G→C	5.1%	intergenic (+24/‑415)	PP_1798 → / → gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
RA	2,026,480	G→C	5.1%	intergenic (+25/‑414)	PP_1798 → / → gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
RA	2,026,481	G→C	5.0%	intergenic (+26/‑413)	PP_1798 → / → gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
RA	2,054,295	G→T	7.1%	intergenic (‑32/+28)	PP_1822 ← / ← folEA‑I	hypothetical protein/GTP cyclohydrolase I
RA	2,054,296	A→C	7.6%	intergenic (‑33/+27)	PP_1822 ← / ← folEA‑I	hypothetical protein/GTP cyclohydrolase I
RA	2,056,057	T→A	5.5%	intergenic (‑63/+23)	PP_1825 ← / ← PP_1826	hypothetical protein/isochorismatase family hydrolase
RA	2,058,619	T→C	5.1%	intergenic (‑27/+39)	PP_1828 ← / ← PP_1829	hypothetical protein/alpha/beta family hydrolase
RA	2,068,177	C→G	23.5%	intergenic (+42/‑165)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,184	C→A	19.8%	intergenic (+49/‑158)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,185	A→C	22.7%	intergenic (+50/‑157)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,186	T→C	21.2%	intergenic (+51/‑156)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,193	G→A	22.4%	intergenic (+58/‑149)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,197	T→C	21.4%	intergenic (+62/‑145)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,200	G→A	22.1%	intergenic (+65/‑142)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,204	T→C	21.6%	intergenic (+69/‑138)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,211	G→A	15.9%	intergenic (+76/‑131)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,212	G→T	17.3%	intergenic (+77/‑130)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,213	T→G	17.9%	intergenic (+78/‑129)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,220	C→G	15.9%	intergenic (+85/‑122)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,073,143	A→T	6.7%	intergenic (‑96/+25)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,073,144	A→T	6.7%	intergenic (‑97/+24)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,083,255	A→C	12.4%	intergenic (+48/+67)	PP_1853 → / ← PP_1854	LysR family transcriptional regulator/hypothetical protein
RA	2,086,107	A→C	5.2%	intergenic (+33/+82)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,090,581	C→T	5.8%	intergenic (+298/‑297)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,090,583	A→G	5.1%	intergenic (+300/‑295)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,090,584	C→T	5.1%	intergenic (+301/‑294)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,090,586	A→G	5.2%	intergenic (+303/‑292)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,092,325	C→G	5.6%	intergenic (+146/+772)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,092,326	C→G	5.4%	intergenic (+147/+771)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,099,024	C→T	7.2%	intergenic (+68/+30)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,099,025	G→T	7.0%	intergenic (+69/+29)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,099,026	A→C	7.2%	intergenic (+70/+28)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,099,027	A→G	7.2%	intergenic (+71/+27)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,100,181	G→C	5.5%	intergenic (‑240/+77)	htpX ← / ← alaA	protease HtpX/glutamate‑pyruvate aminotransferase
RA	2,104,942	G→C	6.9%	intergenic (‑61/‑144)	PP_1875 ← / → PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
RA	2,104,943	G→C	6.3%	intergenic (‑62/‑143)	PP_1875 ← / → PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
RA	2,104,944	G→C	6.3%	intergenic (‑63/‑142)	PP_1875 ← / → PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
RA	2,104,950	T→G	6.6%	intergenic (‑69/‑136)	PP_1875 ← / → PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
RA	2,133,221	A→T	5.5%	A1200A (GCA→GCT)	PP_1887 →	hypothetical protein
RA	2,133,224	A→T	5.7%	Q1201H (CAA→CAT)	PP_1887 →	hypothetical protein
RA	2,133,225	A→T	5.4%	M1202L (ATG→TTG)	PP_1887 →	hypothetical protein
RA	2,133,228	A→T	5.5%	S1203C (AGC→TGC)	PP_1887 →	hypothetical protein
RA	2,152,200	T→G	7.6%	intergenic (+81/+36)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,152,201	T→C	7.2%	intergenic (+82/+35)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,152,202	G→A	7.1%	intergenic (+83/+34)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,152,203	C→A	7.2%	intergenic (+84/+33)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,168,427	T→A	6.0%	I99N (ATT→AAT)	PP_5482 →	hypothetical protein
RA	2,176,493	T→C	5.2%	intergenic (+36/+367)	PP_5484 → / ← PP_1924	hypothetical protein/phosphinothricin N‑acetyltransferase
RA	2,176,494	T→A	5.0%	intergenic (+37/+366)	PP_5484 → / ← PP_1924	hypothetical protein/phosphinothricin N‑acetyltransferase
RA	2,176,495	G→A	5.1%	intergenic (+38/+365)	PP_5484 → / ← PP_1924	hypothetical protein/phosphinothricin N‑acetyltransferase
RA	2,176,643	T→C	5.4%	intergenic (+186/+217)	PP_5484 → / ← PP_1924	hypothetical protein/phosphinothricin N‑acetyltransferase
RA	2,189,213	C→A	5.6%	P93P (CCC→CCA)	PP_5490 →	site‑specific DNA recombinase
RA	2,189,214	T→G	5.5%	W94G (TGG→GGG)	PP_5490 →	site‑specific DNA recombinase
RA	2,197,493	A→C	5.6%	intergenic (+110/‑94)	PP_1937 → / → PP_1938	helicase/hypothetical protein
RA	2,238,084	G→T	6.8%	intergenic (+52/+179)	PP_1971 → / ← PP_t63	hypothetical protein/tRNA‑Asn
RA	2,238,110	G→T	9.6%	intergenic (+78/+153)	PP_1971 → / ← PP_t63	hypothetical protein/tRNA‑Asn
RA	2,242,670	C→G	6.2%	A302A (GCG→GCC) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,242,671	G→C	6.3%	A302G (GCG→GGG) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,242,672	C→G	6.4%	A302P (GCG→CCG) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,246,279	T→G	10.8%	intergenic (+34/‑247)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,292	A→G	8.0%	intergenic (+47/‑234)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,295	G→A	8.0%	intergenic (+50/‑231)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,296	G→T	13.2%	intergenic (+51/‑230)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,298	A→G	9.1%	intergenic (+53/‑228)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,303	C→A	12.1%	intergenic (+58/‑223)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,305	A→C	10.1%	intergenic (+60/‑221)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,251,233	C→T	5.1%	intergenic (+30/+61)	ibpA → / ← PP_1983	small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,251,234	A→G	5.2%	intergenic (+31/+60)	ibpA → / ← PP_1983	small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,261,326	C→T	6.2%	intergenic (+394/‑310)	asd → / → PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
RA	2,261,328	A→G	5.3%	intergenic (+396/‑308)	asd → / → PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
RA	2,261,329	C→T	5.3%	intergenic (+397/‑307)	asd → / → PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
RA	2,261,331	A→G	5.3%	intergenic (+399/‑305)	asd → / → PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
RA	2,278,044	A→G	6.6%	intergenic (+17/+274)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,278,054	C→G	12.9%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,278,058	A→T	13.2%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,278,062	C→G	12.8%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,278,072	C→T	6.9%	intergenic (+45/+246)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,286,995	G→T	5.6%	L275L (CTG→CTT)	PP_2009 →	1‑aminocyclopropane‑1‑carboxylate deaminase
RA	2,286,997	T→A	8.4%	F276Y (TTC→TAC)	PP_2009 →	1‑aminocyclopropane‑1‑carboxylate deaminase
RA	2,287,729	T→G	11.1%	intergenic (‑129/+100)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,287,762	T→G	36.4%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,287,766	G→C	27.8%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,287,767	G→C	27.9%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,287,771	C→A	26.9%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,306,539	T→G	5.4%	intergenic (‑191/‑140)	sbcD ← / → PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
RA	2,310,204	G→A	5.8%	L449L (CTG→TTG)	PP_2028 ←	TPR repeat‑containing protein
RA	2,310,205	T→C	6.3%	Q448Q (CAA→CAG)	PP_2028 ←	TPR repeat‑containing protein
RA	2,316,040	G→A	5.8%	V267I (GTA→ATA) ‡	PP_2033 →	hypothetical protein
RA	2,316,041	T→C	5.8%	V267A (GTA→GCA) ‡	PP_2033 →	hypothetical protein
RA	2,341,489	C→T	7.0%	intergenic (‑41/+39)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,341,490	A→T	6.8%	intergenic (‑42/+38)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,341,491	A→G	7.0%	intergenic (‑43/+37)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,355,513	G→A	5.2%	G910S (GGC→AGC) ‡	PP_2065 →	multidrug RND transporter
RA	2,355,515	C→G	5.2%	G910G (GGC→GGG) ‡	PP_2065 →	multidrug RND transporter
RA	2,355,517	T→C	5.2%	L911P (CTG→CCG)	PP_2065 →	multidrug RND transporter
RA	2,377,073	G→T	5.4%	intergenic (+33/+79)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,377,074	T→C	5.2%	intergenic (+34/+78)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,377,075	G→A	5.2%	intergenic (+35/+77)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,377,076	A→C	5.2%	intergenic (+36/+76)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,386,394	T→G	8.2%	intergenic (+31/+56)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,386,395	C→A	7.5%	intergenic (+32/+55)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,400,579	G→C	5.1%	intergenic (‑195/+48)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,413,652	C→G	6.8%	intergenic (‑96/+46)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,413,653	C→G	6.6%	intergenic (‑97/+45)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,413,654	C→G	6.6%	intergenic (‑98/+44)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,413,655	C→G	6.8%	intergenic (‑99/+43)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,417,896	G→C	7.4%	intergenic (+168/‑253)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,417,897	G→C	7.3%	intergenic (+169/‑252)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,421,546	A→T	6.5%	intergenic (+87/+28)	pdxB → / ← PP_2118	erythronate‑4‑phosphate dehydrogenase/hypothetical protein
RA	2,421,547	A→T	6.4%	intergenic (+88/+27)	pdxB → / ← PP_2118	erythronate‑4‑phosphate dehydrogenase/hypothetical protein
RA	2,430,856	T→G	11.1%	E33D (GAA→GAC) ‡	PP_2126 ←	LuxR family transcriptional regulator
RA	2,430,858	C→A	5.3%	E33* (GAA→TAA) ‡	PP_2126 ←	LuxR family transcriptional regulator
RA	2,448,492	T→A	6.0%	F6I (TTT→ATT) ‡	PP_2140 →	hypothetical protein
RA	2,448,493	T→A	6.2%	F6Y (TTT→TAT) ‡	PP_2140 →	hypothetical protein
RA	2,448,494	T→A	6.2%	F6L (TTT→TTA) ‡	PP_2140 →	hypothetical protein
RA	2,449,407	A→C	9.3%	*159G (TGA→GGA)	sulA ←	cell division inhibitor SulA
RA	2,449,411	G→T	9.3%	L157L (CTC→CTA) ‡	sulA ←	cell division inhibitor SulA
RA	2,449,412	A→C	9.0%	L157R (CTC→CGC) ‡	sulA ←	cell division inhibitor SulA
RA	2,449,416	G→T	9.8%	R156S (CGC→AGC)	sulA ←	cell division inhibitor SulA
RA	2,452,043	T→G	5.6%	L147R (CTG→CGG)	nagZ →	beta‑N‑acetylglucosaminidase
RA	2,452,045	G→C	5.3%	A148P (GCC→CCC) ‡	nagZ →	beta‑N‑acetylglucosaminidase
RA	2,452,047	C→A	5.3%	A148A (GCC→GCA) ‡	nagZ →	beta‑N‑acetylglucosaminidase
RA	2,460,003	G→A	6.4%	S36S (AGC→AGT) ‡	mfd ←	transcription‑repair coupling factor
RA	2,460,004	C→G	6.4%	S36T (AGC→ACC) ‡	mfd ←	transcription‑repair coupling factor
RA	2,460,005	T→C	6.3%	S36G (AGC→GGC) ‡	mfd ←	transcription‑repair coupling factor
RA	2,461,853	T→G	6.7%	intergenic (+112/‑69)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,461,869	A→T	12.4%	intergenic (+128/‑53)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,466,698	G→T	5.1%	A235A (GCG→GCT)	lolC →	lipoprotein releasing system transmembrane protein LolC
RA	2,466,706	T→G	6.4%	V238G (GTA→GGA)	lolC →	lipoprotein releasing system transmembrane protein LolC
RA	2,479,133	C→T	15.2%	intergenic (‑46/+134)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,135	T→C	20.6%	intergenic (‑48/+132)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,140	T→C	21.5%	intergenic (‑53/+127)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,141	C→T	18.4%	intergenic (‑54/+126)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,146	A→G	19.5%	intergenic (‑59/+121)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,147	G→A	18.2%	intergenic (‑60/+120)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,152	G→A	15.7%	intergenic (‑65/+115)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,154	A→G	16.6%	intergenic (‑67/+113)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,488,389	G→A	7.6%	R88H (CGC→CAC)	puuA‑I →	glutamate‑putrescine ligase
RA	2,488,392	T→A	7.4%	L89Q (CTG→CAG)	puuA‑I →	glutamate‑putrescine ligase
RA	2,488,395	T→C	7.6%	V90A (GTG→GCG)	puuA‑I →	glutamate‑putrescine ligase
RA	2,503,207	A→G	6.6%	H39R (CAC→CGC) ‡	PP_2193 →	ferric siderophore receptor
RA	2,503,208	C→T	6.6%	H39H (CAC→CAT) ‡	PP_2193 →	ferric siderophore receptor
RA	2,513,781	A→T	6.9%	M109K (ATG→AAG)	PP_2203 ←	hypothetical protein
RA	2,534,020	G→C	7.7%	intergenic (+155/‑252)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,534,021	G→C	7.7%	intergenic (+156/‑251)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,534,031	Δ1 bp	5.1%	intergenic (+166/‑241)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,545,801	T→A	7.5%	intergenic (+22/+27)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,545,802	G→C	7.5%	intergenic (+23/+26)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,545,803	T→A	7.2%	intergenic (+24/+25)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,565,456	G→C	5.6%	W142C (TGG→TGC)	PP_2243 →	hypothetical protein
RA	2,589,975	A→C	7.8%	V171G (GTT→GGT)	folD‑II ←	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,640,432	C→A	5.5%	intergenic (+30/+87)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,640,433	T→C	5.5%	intergenic (+31/+86)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,640,434	C→G	5.4%	intergenic (+32/+85)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,640,435	G→A	5.3%	intergenic (+33/+84)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,640,436	T→G	5.4%	intergenic (+34/+83)	PP_2304 → / ← PP_2305	peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein
RA	2,669,011	T→G	8.0%	intergenic (+44/‑119)	prpC → / → acnA‑II	methylcitrate synthase/aconitate hydratase
RA	2,669,042	T→G	8.7%	intergenic (+75/‑88)	prpC → / → acnA‑II	methylcitrate synthase/aconitate hydratase
RA	2,671,737	A→T	5.8%	intergenic (+19/‑47)	acnA‑II → / → prpF	aconitate hydratase/aconitate isomerase
RA	2,671,738	A→T	5.7%	intergenic (+20/‑46)	acnA‑II → / → prpF	aconitate hydratase/aconitate isomerase
RA	2,671,739	A→T	5.7%	intergenic (+21/‑45)	acnA‑II → / → prpF	aconitate hydratase/aconitate isomerase
RA	2,673,045	T→G	12.0%	intergenic (+71/‑96)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,046:1	+T	8.2%	intergenic (+72/‑95)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,054	G→C	8.6%	intergenic (+80/‑87)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,055	G→A	8.5%	intergenic (+81/‑86)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,058	T→C	8.3%	intergenic (+84/‑83)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,059	G→A	8.2%	intergenic (+85/‑82)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,062	T→C	8.6%	intergenic (+88/‑79)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,063	G→C	8.8%	intergenic (+89/‑78)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,071	Δ1 bp	9.9%	intergenic (+97/‑70)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,073	C→A	13.4%	intergenic (+99/‑68)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,674,663	T→G	9.4%	intergenic (+38/+37)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,674,666	C→A	9.6%	intergenic (+41/+34)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,688,487	A→C	6.7%	L357R (CTG→CGG)	PP_2352 ←	hypothetical protein
RA	2,688,490	G→T	6.8%	P356Q (CCG→CAG)	PP_2352 ←	hypothetical protein
RA	2,713,262	G→A	5.3%	H313H (CAC→CAT)	cysI ←	sulfite reductase hemoprotein subunit beta
RA	2,737,574	T→G	7.9%	V640G (GTG→GGG)	polB →	DNA polymerase II
RA	2,779,804	G→A	5.1%	P234S (CCA→TCA)	PP_5521 ←	hypothetical protein
RA	2,781,099	A→C	9.0%	K152Q (AAG→CAG)	sotB →	sugar efflux transporter
RA	2,781,104	G→C	5.6%	A153A (GCG→GCC)	sotB →	sugar efflux transporter
RA	2,795,052	C→T	5.1%	G63D (GGC→GAC)	PP_2442 ←	DUF480 domain‑containing protein
RA	2,795,055	A→G	5.1%	V62A (GTC→GCC)	PP_2442 ←	DUF480 domain‑containing protein
RA	2,798,744	G→T	9.7%	intergenic (+61/+66)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,798,747	A→C	8.9%	intergenic (+64/+63)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,798,748	C→A	8.3%	intergenic (+65/+62)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,798,749	T→G	9.9%	intergenic (+66/+61)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,798,750	G→T	8.9%	intergenic (+67/+60)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,798,753	A→C	8.6%	intergenic (+70/+57)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,807,983	A→C	5.4%	K459Q (AAG→CAG) ‡	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,807,984	A→T	5.0%	K459M (AAG→ATG) ‡	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,807,985	G→T	5.0%	K459N (AAG→AAT) ‡	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,817,767	C→T	6.4%	intergenic (+69/‑41)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,817,770	C→G	6.3%	intergenic (+72/‑38)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,817,773	A→G	6.4%	intergenic (+75/‑35)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,857,389	T→A	5.9%	Q312L (CAG→CTG)	PP_2505 ←	GAF domain/GGDEF domain‑containing protein
RA	2,868,821	T→G	11.3%	S297A (TCG→GCG)	gllR →	HTH‑type transcriptional regulator GalR
RA	2,876,006	T→A	5.0%	intergenic (+321/‑209)	PP_2522 → / → PP_2524	transposase/HD domain‑containing protein
RA	2,885,308	T→C	5.6%	V53A (GTG→GCG)	PP_2535 →	transport protein
RA	2,885,311	T→C	5.7%	L54P (CTG→CCG)	PP_2535 →	transport protein
RA	2,885,316	G→A	5.6%	G56S (GGC→AGC)	PP_2535 →	transport protein
RA	2,885,319	G→A	5.7%	A57T (GCG→ACG)	PP_2535 →	transport protein
RA	2,886,348	C→A	6.4%	intergenic (+22/+32)	PP_2535 → / ← PP_2536	transport protein/glutathione S‑transferase family protein
RA	2,886,349	T→A	6.4%	intergenic (+23/+31)	PP_2535 → / ← PP_2536	transport protein/glutathione S‑transferase family protein
RA	2,886,350	T→G	6.4%	intergenic (+24/+30)	PP_2535 → / ← PP_2536	transport protein/glutathione S‑transferase family protein
RA	2,904,228	A→T	5.2%	intergenic (+48/+20)	PP_2552 → / ← PP_2553	DOPA decarboxylase/MFS transporter
RA	2,904,230	A→T	5.0%	intergenic (+50/+18)	PP_2552 → / ← PP_2553	DOPA decarboxylase/MFS transporter
RA	2,956,326	G→C	14.7%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,956,333	A→C	19.0%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,956,334	G→T	19.0%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,956,341	G→C	17.3%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,963,782	T→C	15.0%	intergenic (+56/+86)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,791	G→C	13.8%	intergenic (+65/+77)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,792	T→C	13.8%	intergenic (+66/+76)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,795	G→C	13.7%	intergenic (+69/+73)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,798	G→A	14.3%	intergenic (+72/+70)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,799	G→C	14.3%	intergenic (+73/+69)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,808	G→A	10.7%	intergenic (+82/+60)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,987,684	C→G	5.3%	G163R (GGT→CGT)	PP_2608 ←	shikimate dehydrogenase family protein
RA	2,987,689	C→G	5.4%	R161P (CGC→CCC)	PP_2608 ←	shikimate dehydrogenase family protein
RA	3,006,807	C→G	7.5%	A180G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,006,813	G→A	8.4%	R182Q (CGG→CAG)	PP_2625 →	hypothetical protein
RA	3,006,816	G→C	8.8%	G183A (GGC→GCC)	PP_2625 →	hypothetical protein
RA	3,006,819	T→C	8.8%	L184P (CTG→CCG)	PP_2625 →	hypothetical protein
RA	3,006,825	C→G	9.4%	A186G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,013,305	A→G	5.6%	M261T (ATG→ACG)	PP_2628 ←	ABC transporter ATP‑binding protein
RA	3,029,300	T→A	5.3%	intergenic (+123/+31)	dapA‑II → / ← PP_2640	4‑hydroxy‑tetrahydrodipicolinate synthase/GNAT family acetyltransferase
RA	3,029,301	T→A	5.5%	intergenic (+124/+30)	dapA‑II → / ← PP_2640	4‑hydroxy‑tetrahydrodipicolinate synthase/GNAT family acetyltransferase
RA	3,029,302	T→A	5.5%	intergenic (+125/+29)	dapA‑II → / ← PP_2640	4‑hydroxy‑tetrahydrodipicolinate synthase/GNAT family acetyltransferase
RA	3,035,409	G→C	5.1%	intergenic (+417/‑277)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,036,074	A→T	5.8%	K130M (AAG→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,036,081	C→G	5.6%	I132M (ATC→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,036,084	C→G	5.7%	I133M (ATC→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,036,087	C→G	5.6%	I134M (ATC→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,052,181	A→T	5.3%	intergenic (+36/‑59)	pstB‑I → / → PP_2660	phosphate ABC transporter ATP‑binding protein/hypothetical protein
RA	3,052,185	A→T	6.6%	intergenic (+40/‑55)	pstB‑I → / → PP_2660	phosphate ABC transporter ATP‑binding protein/hypothetical protein
RA	3,053,596	G→T	10.1%	intergenic (+59/‑237)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,053,597	A→C	11.3%	intergenic (+60/‑236)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,053,611	C→T	6.5%	intergenic (+74/‑222)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,056,830	T→A	6.5%	Y180N (TAC→AAC) ‡	PP_2664 →	two‑component system sensor histidine kinase/response regulator
RA	3,056,831	A→G	6.5%	Y180C (TAC→TGC) ‡	PP_2664 →	two‑component system sensor histidine kinase/response regulator
RA	3,056,836	C→T	6.9%	L182L (CTG→TTG) ‡	PP_2664 →	two‑component system sensor histidine kinase/response regulator
RA	3,056,837	T→A	6.8%	L182Q (CTG→CAG) ‡	PP_2664 →	two‑component system sensor histidine kinase/response regulator
RA	3,058,212	T→C	8.0%	intergenic (+21/+25)	PP_2664 → / ← agmR	two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator
RA	3,058,213	G→T	8.4%	intergenic (+22/+24)	PP_2664 → / ← agmR	two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator
RA	3,058,214	A→T	8.8%	intergenic (+23/+23)	PP_2664 → / ← agmR	two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator
RA	3,058,215	T→C	11.5%	intergenic (+24/+22)	PP_2664 → / ← agmR	two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator
RA	3,059,723	G→T	6.0%	intergenic (‑206/+102)	PP_2666 ← / ← PP_2667	hypothetical protein/ABC transporter permease
RA	3,059,724	C→G	5.9%	intergenic (‑207/+101)	PP_2666 ← / ← PP_2667	hypothetical protein/ABC transporter permease
RA	3,059,725	A→C	8.8%	intergenic (‑208/+100)	PP_2666 ← / ← PP_2667	hypothetical protein/ABC transporter permease
RA	3,075,468	A→T	11.8%	intergenic (+44/‑310)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,469	C→T	11.7%	intergenic (+45/‑309)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,471	G→A	11.6%	intergenic (+47/‑307)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,473	T→C	11.7%	intergenic (+49/‑305)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,479	C→T	11.6%	intergenic (+55/‑299)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,480	A→G	11.4%	intergenic (+56/‑298)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,486	G→A	10.1%	intergenic (+62/‑292)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,488	T→C	10.3%	intergenic (+64/‑290)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,490	A→G	10.9%	intergenic (+66/‑288)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,491	A→T	10.9%	intergenic (+67/‑287)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,084,627	C→T	7.4%	intergenic (‑370/+64)	PP_2688 ← / ← PP_2689	hypothetical protein/endoribonuclease
RA	3,084,633	G→C	7.9%	intergenic (‑376/+58)	PP_2688 ← / ← PP_2689	hypothetical protein/endoribonuclease
RA	3,084,636	G→C	8.8%	intergenic (‑379/+55)	PP_2688 ← / ← PP_2689	hypothetical protein/endoribonuclease
RA	3,084,642	A→G	8.3%	intergenic (‑385/+49)	PP_2688 ← / ← PP_2689	hypothetical protein/endoribonuclease
RA	3,131,848	G→C	7.7%	A190G (GCC→GGC)	PP_2744 ←	ribose‑phosphate pyrophosphokinase family protein
RA	3,131,856	A→C	6.1%	F187L (TTT→TTG) ‡	PP_2744 ←	ribose‑phosphate pyrophosphokinase family protein
RA	3,131,858	A→C	5.2%	F187V (TTT→GTT) ‡	PP_2744 ←	ribose‑phosphate pyrophosphokinase family protein
RA	3,146,499:1	+A	5.0%	coding (424/972 nt)	PP_2757 →	sugar‑binding protein
RA	3,194,270	G→C	5.8%	L458V (CTG→GTG)	PP_2799 ←	class III aminotransferase
RA	3,194,271	G→C	5.4%	H457Q (CAC→CAG)	PP_2799 ←	class III aminotransferase
RA	3,203,894	A→T	6.1%	intergenic (‑246/+31)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,203,898	A→T	6.2%	intergenic (‑250/+27)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,203,902	A→T	6.5%	intergenic (‑254/+23)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,241,140	G→T	5.4%	G415C (GGT→TGT) ‡	PP_2834 →	D‑galactarate dehydratase/altronate dehydratase
RA	3,241,142	T→A	5.7%	G415G (GGT→GGA) ‡	PP_2834 →	D‑galactarate dehydratase/altronate dehydratase
RA	3,241,144	A→C	6.1%	Q416P (CAG→CCG)	PP_2834 →	D‑galactarate dehydratase/altronate dehydratase
RA	3,243,137	T→G	6.5%	L195R (CTG→CGG)	PP_2836 →	2‑keto‑3‑deoxyxylonate dehydratase
RA	3,243,139	T→A	6.5%	S196T (TCC→ACC) ‡	PP_2836 →	2‑keto‑3‑deoxyxylonate dehydratase
RA	3,243,141	C→A	6.6%	S196S (TCC→TCA) ‡	PP_2836 →	2‑keto‑3‑deoxyxylonate dehydratase
RA	3,245,190	G→C	7.2%	intergenic (+18/‑107)	PP_2837 → / → PP_2838	uronate transporter/hypothetical protein
RA	3,257,484	G→A	5.8%	intergenic (+22/+221)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,257,489	T→C	5.8%	intergenic (+27/+216)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,279,828	T→A	5.8%	H198Q (CAT→CAA)	eamA →	O‑acetylserine/cysteine export transporter
RA	3,279,830	C→G	5.6%	A199G (GCC→GGC)	eamA →	O‑acetylserine/cysteine export transporter
RA	3,279,832	T→A	5.4%	L200M (TTG→ATG)	eamA →	O‑acetylserine/cysteine export transporter
RA	3,297,313	G→C	6.8%	Q535H (CAG→CAC)	PP_2893 →	hypothetical protein
RA	3,297,315	T→G	11.6%	L536R (CTG→CGG)	PP_2893 →	hypothetical protein
RA	3,297,378	C→T	5.8%	P557L (CCG→CTG)	PP_2893 →	hypothetical protein
RA	3,303,020	G→C	5.1%	G82A (GGT→GCT)	pvdQ →	acyl‑homoserine lactone acylase PvdQ
RA	3,303,022	G→C	5.1%	E83Q (GAG→CAG) ‡	pvdQ →	acyl‑homoserine lactone acylase PvdQ
RA	3,303,024	G→C	5.2%	E83D (GAG→GAC) ‡	pvdQ →	acyl‑homoserine lactone acylase PvdQ
RA	3,311,259	C→G	100%	G188R (GGC→CGC)	PP_2907 ←	two‑component system response regulator
RA	3,312,038	T→C	5.5%	K185E (AAG→GAG)	csiR ←	DNA‑binding transcriptional repressor
RA	3,312,039	G→A	5.4%	L184L (CTC→CTT)	csiR ←	DNA‑binding transcriptional repressor
RA	3,312,692	A→G	9.8%	intergenic (‑102/‑94)	csiR ← / → csiD	DNA‑binding transcriptional repressor/carbon starvation induced protein
RA	3,317,679	G→T	7.9%	intergenic (+28/‑134)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,317,680	T→A	7.6%	intergenic (+29/‑133)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,317,681	T→A	7.7%	intergenic (+30/‑132)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,317,682	A→C	7.7%	intergenic (+31/‑131)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,318,817	C→A	7.7%	intergenic (+30/‑129)	hemB → / → proP	5‑aminolevulinate dehydratase/osmosensory proline/betaine/H+ permease
RA	3,318,820	T→G	7.7%	intergenic (+33/‑126)	hemB → / → proP	5‑aminolevulinate dehydratase/osmosensory proline/betaine/H+ permease
RA	3,327,941	T→A	6.5%	C317S (TGC→AGC) ‡	PP_2922 →	urea amidolyase‑like protein
RA	3,327,943	C→G	6.6%	C317W (TGC→TGG) ‡	PP_2922 →	urea amidolyase‑like protein
RA	3,327,945	T→A	6.5%	L318Q (CTG→CAG)	PP_2922 →	urea amidolyase‑like protein
RA	3,344,121	T→A	6.4%	intergenic (‑131/+112)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,344,122	T→A	6.1%	intergenic (‑132/+111)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,344,155	T→A	7.2%	intergenic (‑165/+78)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,344,156	A→C	5.3%	intergenic (‑166/+77)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,344,170	T→G	7.5%	intergenic (‑180/+63)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,345,571:1	+A	5.1%	coding (249/1587 nt)	ybiT ←	ABC‑F family ATPase
RA	3,345,576	Δ1 bp	5.1%	coding (244/1587 nt)	ybiT ←	ABC‑F family ATPase
RA	3,377,112	T→C	7.9%	intergenic (‑48/‑71)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,377,113	G→C	8.3%	intergenic (‑49/‑70)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,377,114	G→A	7.7%	intergenic (‑50/‑69)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,377,803	T→G	8.1%	intergenic (+261/+31)	PP_2970 → / ← PP_2971	hypothetical protein/transposase
RA	3,377,809:1	+A	7.7%	intergenic (+267/+25)	PP_2970 → / ← PP_2971	hypothetical protein/transposase
RA	3,377,810	C→G	14.4%	intergenic (+268/+24)	PP_2970 → / ← PP_2971	hypothetical protein/transposase
RA	3,385,528	A→G	5.0%	N70D (AAC→GAC)	tnpT‑I →	cointegrate resolution protein T
RA	3,385,532	T→A	5.7%	L71Q (CTG→CAG)	tnpT‑I →	cointegrate resolution protein T
RA	3,385,536	C→T	5.9%	V72V (GTC→GTT)	tnpT‑I →	cointegrate resolution protein T
RA	3,398,639	C→G	5.1%	A254P (GCC→CCC)	PP_2997 ←	protein CnmA
RA	3,398,643	T→A	5.3%	T252T (ACA→ACT) ‡	PP_2997 ←	protein CnmA
RA	3,398,644	G→C	5.3%	T252R (ACA→AGA) ‡	PP_2997 ←	protein CnmA
RA	3,398,645	T→A	5.1%	T252S (ACA→TCA) ‡	PP_2997 ←	protein CnmA
RA	3,398,649	C→G	5.1%	G250G (GGG→GGC)	PP_2997 ←	protein CnmA
RA	3,412,791	C→T	5.7%	L182L (CTG→TTG) ‡	PP_3020 →	serine/threonine protein phosphatase
RA	3,412,792	T→C	5.6%	L182P (CTG→CCG) ‡	PP_3020 →	serine/threonine protein phosphatase
RA	3,412,795	G→A	5.7%	R183Q (CGA→CAA) ‡	PP_3020 →	serine/threonine protein phosphatase
RA	3,412,796	A→G	5.8%	R183R (CGA→CGG) ‡	PP_3020 →	serine/threonine protein phosphatase
RA	3,427,802	C→T	5.3%	A323V (GCT→GTT) ‡	PP_3038 →	TraC domain‑containing protein
RA	3,427,803	T→A	5.2%	A323A (GCT→GCA) ‡	PP_3038 →	TraC domain‑containing protein
RA	3,427,804	A→G	5.3%	T324A (ACC→GCC)	PP_3038 →	TraC domain‑containing protein
RA	3,441,187	T→A	6.3%	W44R (TGG→AGG)	gpI →	tail formation protein
RA	3,441,191	T→C	6.4%	L45P (CTG→CCG) ‡	gpI →	tail formation protein
RA	3,441,192	G→A	6.7%	L45L (CTG→CTA) ‡	gpI →	tail formation protein
RA	3,441,196	T→A	6.3%	W47R (TGG→AGG)	gpI →	tail formation protein
RA	3,448,521	T→G	11.2%	F763C (TTT→TGT)	PP_3062 →	tail length determination protein
RA	3,452,205	A→C	7.9%	K176T (AAG→ACG)	PP_3066 →	lytic enzyme
RA	3,452,278	A→C	11.8%	S18R (AGC→CGC)	PP_5556 →	bacteriophage lysis protein
RA	3,452,283	T→G	13.6%	A19A (GCT→GCG)	PP_5556 →	bacteriophage lysis protein
RA	3,458,455	C→T	6.1%	intergenic (‑17/+96)	PP_3069 ← / ← ppiC‑I	outer membrane autotransporter/peptidyl‑prolyl cis‑trans isomerase C
RA	3,458,472	A→G	5.9%	intergenic (‑34/+79)	PP_3069 ← / ← ppiC‑I	outer membrane autotransporter/peptidyl‑prolyl cis‑trans isomerase C
RA	3,471,047	G→C	5.0%	noncoding (105/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,471,048	A→T	5.2%	noncoding (104/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,471,049	A→T	5.1%	noncoding (103/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,471,050	G→C	5.3%	noncoding (102/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,471,833	T→G	24.7%	intergenic (‑16/+108)	PP_3081 ← / ← PP_5560	hypothetical protein/hypothetical protein
RA	3,497,082	A→T	9.0%	L110Q (CTG→CAG)	PP_3096 ←	hypothetical protein
RA	3,533,558	T→A	7.6%	L128Q (CTG→CAG)	dnaEB →	error‑prone DNA polymerase
RA	3,533,561	T→A	7.3%	L129Q (CTG→CAG)	dnaEB →	error‑prone DNA polymerase
RA	3,539,754	T→G	6.7%	intergenic (+49/‑106)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,539,759	A→C	7.1%	intergenic (+54/‑101)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,539,760	C→A	7.0%	intergenic (+55/‑100)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,539,763	T→G	7.4%	intergenic (+58/‑97)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,539,764	G→T	7.7%	intergenic (+59/‑96)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,539,769	C→A	7.4%	intergenic (+64/‑91)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,541,800	A→T	5.6%	D149V (GAC→GTC)	PP_3125 →	Cro/CI family transcriptional regulator
RA	3,583,420	T→A	6.8%	intergenic (+105/‑219)	PP_3158 → / → PP_5589	hypothetical protein/rhs repeat‑associated core domain‑containing protein
RA	3,585,620	A→G	5.9%	I255V (ATC→GTC) ‡	benR →	BenABC operon transcriptional activator
RA	3,585,622	C→G	5.5%	I255M (ATC→ATG) ‡	benR →	BenABC operon transcriptional activator
RA	3,585,624	C→T	5.4%	T256M (ACG→ATG)	benR →	BenABC operon transcriptional activator
RA	3,589,890	G→T	7.1%	intergenic (+45/‑90)	benC → / → benD	benzoate 1,2‑dioxygenase electron transfer component/1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase
RA	3,589,891	A→C	7.8%	intergenic (+46/‑89)	benC → / → benD	benzoate 1,2‑dioxygenase electron transfer component/1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase
RA	3,615,260	A→C	5.3%	intergenic (‑36/+20)	PP_3183 ← / ← mcoA	SCO1/SenC family protein/Mn(II) copper oxidase A
RA	3,615,261	T→A	5.1%	intergenic (‑37/+19)	PP_3183 ← / ← mcoA	SCO1/SenC family protein/Mn(II) copper oxidase A
RA	3,615,262	G→T	5.3%	intergenic (‑38/+18)	PP_3183 ← / ← mcoA	SCO1/SenC family protein/Mn(II) copper oxidase A
RA	3,620,448	A→G	9.4%	intergenic (+19/‑210)	PP_3186 → / → codB	transcriptional regulator/cytosine transporter
RA	3,629,136	G→C	5.9%	intergenic (‑92/+81)	PP_3194 ← / ← PP_3195	hypothetical protein/hypothetical protein
RA	3,633,074	C→G	5.3%	intergenic (+11/‑129)	PP_3198 → / → PP_3199	2Fe‑2S ferredoxin/monooxygenase
RA	3,633,579	T→G	5.0%	L126R (CTG→CGG)	PP_3199 →	monooxygenase
RA	3,633,581	G→C	5.0%	G127R (GGC→CGC)	PP_3199 →	monooxygenase
RA	3,641,395	A→T	5.1%	I111F (ATC→TTC)	PP_3203 →	MFS transporter
RA	3,649,940	C→T	6.3%	intergenic (‑43/+23)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,649,943	A→G	6.1%	intergenic (‑46/+20)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,664,898	C→G	7.1%	intergenic (‑41/+34)	PP_3223 ← / ← PP_3224	ABC transporter substrate‑binding protein/class II aldolase/adducin domain‑containing protein
RA	3,664,900	G→A	7.1%	intergenic (‑43/+32)	PP_3223 ← / ← PP_3224	ABC transporter substrate‑binding protein/class II aldolase/adducin domain‑containing protein
RA	3,664,901	T→C	7.2%	intergenic (‑44/+31)	PP_3223 ← / ← PP_3224	ABC transporter substrate‑binding protein/class II aldolase/adducin domain‑containing protein
RA	3,664,903	C→G	7.2%	intergenic (‑46/+29)	PP_3223 ← / ← PP_3224	ABC transporter substrate‑binding protein/class II aldolase/adducin domain‑containing protein
RA	3,690,330	G→A	5.4%	intergenic (+20/‑39)	PP_5593 → / → PP_5594	hypothetical protein/hypothetical protein
RA	3,690,333	G→T	5.5%	intergenic (+23/‑36)	PP_5593 → / → PP_5594	hypothetical protein/hypothetical protein
RA	3,690,336	A→C	5.3%	intergenic (+26/‑33)	PP_5593 → / → PP_5594	hypothetical protein/hypothetical protein
RA	3,690,339	T→C	5.7%	intergenic (+29/‑30)	PP_5593 → / → PP_5594	hypothetical protein/hypothetical protein
RA	3,716,892	G→A	5.3%	A27A (GCC→GCT)	paaB ←	ring 1,2‑phenylacetyl‑CoA epoxidase regulatory subunit
RA	3,727,796	T→A	6.2%	Y21N (TAT→AAT) ‡	PP_3288 →	universal stress protein family protein
RA	3,727,797	A→T	6.0%	Y21F (TAT→TTT) ‡	PP_3288 →	universal stress protein family protein
RA	3,727,798	T→A	6.1%	Y21* (TAT→TAA) ‡	PP_3288 →	universal stress protein family protein
RA	3,728,675	G→T	5.3%	intergenic (+13/+17)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,728,676	C→T	5.3%	intergenic (+14/+16)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,728,677	A→G	5.3%	intergenic (+15/+15)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,728,678	A→C	5.3%	intergenic (+16/+14)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,767,934	A→T	5.8%	N62I (AAC→ATC)	PP_3326 →	hypothetical protein
RA	3,767,939	A→T	5.5%	I64F (ATC→TTC)	PP_3326 →	hypothetical protein
RA	3,768,494	A→G	8.8%	intergenic (+22/+1653)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,768,496	G→C	8.8%	intergenic (+24/+1651)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,768,498	C→T	8.8%	intergenic (+26/+1649)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,771,143	G→T	5.1%	R161L (CGA→CTA) ‡	PP_5599 →	LysR family transcriptional regulator
RA	3,771,144	A→C	5.3%	R161R (CGA→CGC) ‡	PP_5599 →	LysR family transcriptional regulator
RA	3,773,252	T→G	5.5%	L92R (CTG→CGG)	PP_5600 →	hypothetical protein
RA	3,781,365	T→G	20.6%	intergenic (+55/‑88)	PP_3338 → / → PP_3339	cytochrome bd‑type quinol oxidase/hypothetical protein
RA	3,781,371	T→G	14.3%	intergenic (+61/‑82)	PP_3338 → / → PP_3339	cytochrome bd‑type quinol oxidase/hypothetical protein
RA	3,781,374	G→C	7.8%	intergenic (+64/‑79)	PP_3338 → / → PP_3339	cytochrome bd‑type quinol oxidase/hypothetical protein
RA	3,798,884	A→T	5.2%	L211M (TTG→ATG)	PP_3355 ←	beta‑ketothiolase
RA	3,798,889	A→T	5.4%	I209N (ATT→AAT)	PP_3355 ←	beta‑ketothiolase
RA	3,802,493	A→T	6.7%	C165S (TGC→AGC)	vdh ←	vanillin dehydrogenase
RA	3,802,498	A→T	6.6%	L163Q (CTG→CAG)	vdh ←	vanillin dehydrogenase
RA	3,805,831	A→G	5.1%	intergenic (+49/+30)	PP_3360 → / ← PP_3361	membrane protein/aminotransferase
RA	3,805,836	C→T	5.4%	intergenic (+54/+25)	PP_3360 → / ← PP_3361	membrane protein/aminotransferase
RA	3,809,012	C→G	5.3%	intergenic (‑104/‑40)	PP_3361 ← / → PP_3362	aminotransferase/AsnC family transcriptional regulator
RA	3,817,651	A→G	5.6%	D328G (GAC→GGC)	PP_3368 →	MFS transporter
RA	3,817,654	T→A	5.5%	I329N (ATT→AAT)	PP_3368 →	MFS transporter
RA	3,817,657	C→T	5.6%	A330V (GCC→GTC)	PP_3368 →	MFS transporter
RA	3,849,916	A→T	6.9%	L237Q (CTG→CAG)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,849,920	C→G	6.5%	G236R (GGC→CGC)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,849,921	C→G	6.5%	A235A (GCG→GCC)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,849,925	A→T	6.4%	L234Q (CTG→CAG)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,858,111	T→A	6.4%	I169N (ATT→AAT)	alkB →	alpha‑ketoglutarate‑ and Fe(II)‑dependent dioxygenase
RA	3,858,758	C→T	6.2%	intergenic (+48/+34)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,858,764	T→C	6.6%	intergenic (+54/+28)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,858,765	G→A	6.7%	intergenic (+55/+27)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,858,771	A→G	6.2%	intergenic (+61/+21)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,874,851	T→G	5.0%	E354A (GAG→GCG)	PP_3419 ←	sigma‑54 dependent transcriptional regulator/response regulator
RA	3,887,817	C→T	5.1%	intergenic (+67/‑158)	oprN → / → PP_3428	multidrug RND transporter outer membrane protein OprN/TPR repeat‑containing protein
RA	3,919,426	G→C	5.3%	R118R (CGC→CGG)	PP_3454 ←	transcriptional regulator
RA	3,934,790	G→T	6.1%	intergenic (+20/+18)	PP_3464 → / ← PP_5603	hypothetical protein/FAD dependent oxidoreductase
RA	3,934,792	A→C	7.2%	intergenic (+22/+16)	PP_3464 → / ← PP_5603	hypothetical protein/FAD dependent oxidoreductase
RA	3,947,936	G→A	5.1%	A317V (GCG→GTG)	PP_3478 ←	secretion protein
RA	3,947,948	T→G	5.1%	D313A (GAC→GCC)	PP_3478 ←	secretion protein
RA	3,952,947	T→G	6.9%	Q32P (CAG→CCG)	PP_3483 ←	type II secretion system protein
RA	3,956,098	A→C	9.5%	intergenic (‑69/+126)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,987,828	G→T	6.1%	G118G (GGG→GGT)	PP_3510 →	hypothetical protein
RA	3,987,831	T→A	6.1%	H119Q (CAT→CAA)	PP_3510 →	hypothetical protein
RA	3,987,834	A→C	6.1%	*120C (TGA→TGC)	PP_3510 →	hypothetical protein
RA	3,989,036	A→C	6.2%	intergenic (+37/+153)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	4,007,676	C→G	5.1%	intergenic (+30/‑60)	allE → / → PP_3531	S‑ureidoglycine aminohydrolase/hypothetical protein
RA	4,007,677	C→T	5.1%	intergenic (+31/‑59)	allE → / → PP_3531	S‑ureidoglycine aminohydrolase/hypothetical protein
RA	4,009,136	T→C	5.0%	W37R (TGG→CGG) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,009,137	G→T	5.1%	W37L (TGG→TTG) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,009,140	A→C	5.1%	Q38P (CAG→CCG) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,009,141	G→A	5.1%	Q38Q (CAG→CAA) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,018,201	G→A	100%	intergenic (+144/‑36)	mvaB → / → PP_mr44	hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA
RA	4,026,358	C→G	5.5%	*314S (TGA→TCA)	PP_3547 ←	NAD(P)‑binding oxidoreductase
RA	4,054,900	A→G	20.6%	intergenic (+40/‑61)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,054,903	C→G	19.3%	intergenic (+43/‑58)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,054,906	C→T	19.1%	intergenic (+46/‑55)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,055,004	T→G	5.4%	L15R (CTG→CGG)	oprB‑III →	carbohydrate‑selective porin
RA	4,056,245	C→G	7.5%	intergenic (+16/+27)	oprB‑III → / ← PP_3571	carbohydrate‑selective porin/acetylornithine deacetylase
RA	4,084,420	T→G	13.0%	intergenic (‑231/+153)	sdaC ← / ← amaC	serine:H+ symport permease/D‑lysine aminotransferase
RA	4,084,441	A→T	6.0%	intergenic (‑252/+132)	sdaC ← / ← amaC	serine:H+ symport permease/D‑lysine aminotransferase
RA	4,084,451	A→C	7.0%	intergenic (‑262/+122)	sdaC ← / ← amaC	serine:H+ symport permease/D‑lysine aminotransferase
RA	4,085,912	A→T	5.0%	intergenic (‑143/+20)	amaC ← / ← dpkA	D‑lysine aminotransferase/delta 1‑piperideine‑2‑carboxylate reductase
RA	4,130,294	A→T	5.4%	intergenic (+30/+51)	PP_3628 → / ← PP_3629	choline/carnitine/betaine transporter family protein/hypothetical protein
RA	4,138,970	T→A	7.0%	A351A (GCA→GCT) ‡	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,138,972	C→G	6.7%	A351P (GCA→CCA) ‡	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,138,974	T→A	6.9%	Q350L (CAG→CTG)	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,148,875	T→A	10.4%	intergenic (+35/‑88)	PP_3647 → / → PP_3648	oxidoreductase/carboxymuconolactone decarboxylase family protein
RA	4,148,876	T→A	10.1%	intergenic (+36/‑87)	PP_3647 → / → PP_3648	oxidoreductase/carboxymuconolactone decarboxylase family protein
RA	4,155,517	T→G	6.2%	L43V (TTG→GTG)	PP_3655 →	cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,155,520	C→A	5.7%	P44T (CCC→ACC) ‡	PP_3655 →	cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,155,522	C→G	5.9%	P44P (CCC→CCG) ‡	PP_3655 →	cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,155,525	C→G	5.3%	I45M (ATC→ATG)	PP_3655 →	cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,155,527	T→G	5.2%	V46G (GTC→GGC)	PP_3655 →	cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,155,530	C→A	5.3%	T47N (ACC→AAC)	PP_3655 →	cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,160,283	C→T	5.3%	G68G (GGG→GGA) ‡	PP_3658 ←	aromatic compound MFS transporter
RA	4,160,285	C→G	5.3%	G68R (GGG→CGG) ‡	PP_3658 ←	aromatic compound MFS transporter
RA	4,160,287	A→G	5.1%	F67S (TTC→TCC)	PP_3658 ←	aromatic compound MFS transporter
RA	4,163,456	C→G	7.4%	A158G (GCG→GGG)	PP_3661 →	membrane protein
RA	4,163,459	T→G	25.3%	L159R (CTG→CGG)	PP_3661 →	membrane protein
RA	4,163,464	A→C	20.8%	S161R (AGC→CGC)	PP_3661 →	membrane protein
RA	4,164,075	A→G	12.1%	intergenic (+30/‑179)	PP_3661 → / → PP_3662	membrane protein/hypothetical protein
RA	4,167,092	T→C	5.1%	intergenic (‑43/+34)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,167,096	T→A	5.4%	intergenic (‑47/+30)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,167,097	T→A	5.2%	intergenic (‑48/+29)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,167,101	G→A	5.2%	intergenic (‑52/+25)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,175,173	T→G	10.1%	intergenic (‑288/‑99)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,175,175	A→T	9.5%	intergenic (‑290/‑97)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,175,176	A→T	9.9%	intergenic (‑291/‑96)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,175,178	C→A	8.9%	intergenic (‑293/‑94)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,192,965	G→A	6.3%	intergenic (+77/‑133)	PP_3683 → / → PP_3684	hypothetical protein/hypothetical protein
RA	4,192,966	C→G	6.2%	intergenic (+78/‑132)	PP_3683 → / → PP_3684	hypothetical protein/hypothetical protein
RA	4,192,967	T→C	5.8%	intergenic (+79/‑131)	PP_3683 → / → PP_3684	hypothetical protein/hypothetical protein
RA	4,193,343	T→C	5.1%	R82R (CGT→CGC)	PP_3684 →	hypothetical protein
RA	4,193,344	G→A	5.1%	E83K (GAG→AAG) ‡	PP_3684 →	hypothetical protein
RA	4,193,345	A→C	5.1%	E83A (GAG→GCG) ‡	PP_3684 →	hypothetical protein
RA	4,249,970	G→T	5.5%	A15D (GCT→GAT)	aruH ←	arginine‑‑pyruvate transaminase AruH
RA	4,249,976	T→G	6.5%	D13A (GAC→GCC)	aruH ←	arginine‑‑pyruvate transaminase AruH
RA	4,249,979	C→A	6.4%	G12V (GGC→GTC)	aruH ←	arginine‑‑pyruvate transaminase AruH
RA	4,257,187	C→A	5.2%	intergenic (‑162/+78)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,257,190	A→G	5.7%	intergenic (‑165/+75)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,257,195	G→C	6.1%	intergenic (‑170/+70)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,257,198	G→C	6.3%	intergenic (‑173/+67)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,257,203	C→T	6.4%	intergenic (‑178/+62)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,257,206	T→G	6.0%	intergenic (‑181/+59)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,261,347	G→C	5.3%	L185V (CTG→GTG)	PP_3729 ←	amino acid‑binding protein‑like protein
RA	4,261,349	A→T	5.1%	L184Q (CTG→CAG)	PP_3729 ←	amino acid‑binding protein‑like protein
RA	4,278,037	T→C	5.3%	intergenic (+20/+41)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,278,043	G→T	5.6%	intergenic (+26/+35)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,278,046	G→A	5.7%	intergenic (+29/+32)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,278,047	T→A	5.7%	intergenic (+30/+31)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,278,048	T→C	5.5%	intergenic (+31/+30)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,278,051	A→C	5.4%	intergenic (+34/+27)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,278,057	G→A	5.9%	intergenic (+40/+21)	PP_3743 → / ← glcC	hypothetical protein/transcriptional regulator GlcC
RA	4,278,224	A→T	5.3%	Y216N (TAC→AAC)	glcC ←	transcriptional regulator GlcC
RA	4,278,225	C→G	5.3%	L215F (TTG→TTC) ‡	glcC ←	transcriptional regulator GlcC
RA	4,278,226	A→T	5.3%	L215* (TTG→TAG) ‡	glcC ←	transcriptional regulator GlcC
RA	4,279,405	C→G	5.6%	R123R (CGC→CGG)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,279,406	G→T	5.3%	V124L (GTG→TTG)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,279,411	A→C	5.3%	Q125H (CAA→CAC)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,279,412	C→G	5.3%	P126A (CCG→GCG)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,291,671	G→C	5.6%	A353G (GCC→GGC)	PP_3758 ←	two component system response regulator/sensor histidine kinase
RA	4,291,674	T→A	5.7%	Q352L (CAG→CTG)	PP_3758 ←	two component system response regulator/sensor histidine kinase
RA	4,291,677	T→A	5.7%	Q351L (CAG→CTG)	PP_3758 ←	two component system response regulator/sensor histidine kinase
RA	4,291,680	G→C	5.6%	A350G (GCC→GGC)	PP_3758 ←	two component system response regulator/sensor histidine kinase
RA	4,298,213	G→A	6.5%	intergenic (+36/+34)	PP_3762 → / ← PP_3763	two‑component system response regulator/precorrin‑6A synthase
RA	4,298,214	T→C	6.6%	intergenic (+37/+33)	PP_3762 → / ← PP_3763	two‑component system response regulator/precorrin‑6A synthase
RA	4,306,051	A→G	5.3%	T75A (ACG→GCG)	PP_3774 →	hypothetical protein
RA	4,306,064	C→T	5.0%	A79V (GCC→GTC)	PP_3774 →	hypothetical protein
RA	4,316,307	T→A	5.6%	F12I (TTT→ATT) ‡	PP_3784 →	hypothetical protein
RA	4,316,308	T→A	5.6%	F12Y (TTT→TAT) ‡	PP_3784 →	hypothetical protein
RA	4,321,015	A→C	8.4%	A35A (GCA→GCC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,321,018	G→T	9.3%	A36A (GCG→GCT)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,321,651	C→T	5.5%	H247H (CAC→CAT)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,321,656	T→A	5.3%	V249D (GTC→GAC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,321,661	A→G	5.4%	M251V (ATG→GTG)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,343,486	A→T	11.6%	intergenic (+113/+29)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,343,487	A→T	10.3%	intergenic (+114/+28)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,345,068	A→T	37.0%	intergenic (+60/‑271)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,069	G→C	39.4%	intergenic (+61/‑270)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,074	A→G	39.7%	intergenic (+66/‑265)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,075	C→T	40.3%	intergenic (+67/‑264)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,076	A→G	39.8%	intergenic (+68/‑263)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,077	C→T	40.3%	intergenic (+69/‑262)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,082	G→C	37.7%	intergenic (+74/‑257)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,083	A→T	36.1%	intergenic (+75/‑256)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,349,295	A→T	10.3%	intergenic (+33/‑123)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,297	C→T	10.5%	intergenic (+35/‑121)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,298	A→G	10.5%	intergenic (+36/‑120)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,303	C→G	9.6%	intergenic (+41/‑115)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,306	C→G	10.2%	intergenic (+44/‑112)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,311	C→T	9.9%	intergenic (+49/‑107)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,312	A→G	10.0%	intergenic (+50/‑106)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,314	A→T	10.4%	intergenic (+52/‑104)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,353,698	A→G	48.3%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,421,075	Δ1 bp	5.4%	intergenic (+24/+95)	PP_3901 → / ← PP_3902	hypothetical protein/hypothetical protein
RA	4,421,080:1	+G	5.2%	intergenic (+29/+90)	PP_3901 → / ← PP_3902	hypothetical protein/hypothetical protein
RA	4,430,132	G→C	6.4%	intergenic (‑197/‑603)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,430,134	G→C	6.7%	intergenic (‑199/‑601)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,430,136	G→C	6.7%	intergenic (‑201/‑599)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,436,263	T→G	5.8%	L347W (TTG→TGG) ‡	PP_3925 →	hypothetical protein
RA	4,436,264	G→C	5.7%	L347F (TTG→TTC) ‡	PP_3925 →	hypothetical protein
RA	4,436,265	C→A	5.7%	Q348K (CAG→AAG)	PP_3925 →	hypothetical protein
RA	4,450,243	C→G	5.3%	G117A (GGG→GCG) ‡	nicE ←	maleate isomerase
RA	4,450,244	C→G	5.1%	G117R (GGG→CGG) ‡	nicE ←	maleate isomerase
RA	4,451,484	G→C	5.3%	Y358* (TAC→TAG)	nicC ←	6‑hydroxynicotinate 3‑monooxygenase
RA	4,451,487	G→C	5.3%	L357L (CTC→CTG)	nicC ←	6‑hydroxynicotinate 3‑monooxygenase
RA	4,462,421	C→G	5.2%	I22M (ATC→ATG)	pcaI →	3‑oxoadipate CoA‑transferase subunit A
RA	4,468,946	A→T	7.6%	*139C (TGA→TGT)	PP_3956 →	hypothetical protein
RA	4,468,949	G→C	7.8%	intergenic (+3/+25)	PP_3956 → / ← betT‑III	hypothetical protein/choline/carnitine/betaine transporter BetTC
RA	4,468,952	A→T	7.7%	intergenic (+6/+22)	PP_3956 → / ← betT‑III	hypothetical protein/choline/carnitine/betaine transporter BetTC
RA	4,472,648	A→C	8.5%	intergenic (+36/‑101)	nhaA‑II → / → PP_3959	Na(+)/H(+) antiporter NhaA/voltage‑gated chloride channel family protein
RA	4,501,660	T→A	5.1%	intergenic (+17/+35)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,501,661	A→G	5.1%	intergenic (+18/+34)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,501,664	C→T	5.1%	intergenic (+21/+31)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,501,665	T→A	5.1%	intergenic (+22/+30)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,508,209	A→G	6.1%	D282G (GAC→GGC)	xanP →	xanthine permease
RA	4,508,212	T→G	6.4%	V283G (GTT→GGT)	xanP →	xanthine permease
RA	4,508,215	C→A	6.0%	T284N (ACC→AAC)	xanP →	xanthine permease
RA	4,508,782	C→T	5.7%	intergenic (+38/‑60)	xanP → / → tusD	xanthine permease/sulfur transfer protein complex subunit TusD
RA	4,508,783	A→G	5.7%	intergenic (+39/‑59)	xanP → / → tusD	xanthine permease/sulfur transfer protein complex subunit TusD
RA	4,533,346	T→A	6.0%	intergenic (+28/‑48)	purB → / → PP_4017	adenylosuccinate lyase/hypothetical protein
RA	4,535,018	T→A	13.3%	intergenic (+31/‑137)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,535,019	T→A	15.0%	intergenic (+32/‑136)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,538,604	A→T	10.4%	intergenic (+53/‑121)	PP_4020 → / → cpo	oxidoreductase/non‑heme chloroperoxidase
RA	4,538,609	A→T	8.4%	intergenic (+58/‑116)	PP_4020 → / → cpo	oxidoreductase/non‑heme chloroperoxidase
RA	4,546,773	A→T	5.0%	Y166F (TAC→TTC)	nhaB →	Na(+)/H(+) antiporter NhaB
RA	4,556,967	A→T	11.8%	intergenic (+68/+113)	pydA → / ← rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
RA	4,556,968	C→G	11.1%	intergenic (+69/+112)	pydA → / ← rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
RA	4,556,969	A→T	11.1%	intergenic (+70/+111)	pydA → / ← rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
RA	4,579,221	C→G	6.1%	R300R (CGC→CGG)	glgX →	glycogen debranching enzyme
RA	4,581,040	T→C	6.2%	H148H (CAT→CAC)	ybhP‑II →	phosphohydrolase
RA	4,581,043	G→A	6.1%	A149A (GCG→GCA)	ybhP‑II →	phosphohydrolase
RA	4,581,045	T→A	5.9%	V150D (GTC→GAC)	ybhP‑II →	phosphohydrolase
RA	4,581,047	T→C	6.0%	C151R (TGC→CGC)	ybhP‑II →	phosphohydrolase
RA	4,581,050	G→A	6.3%	V152M (GTG→ATG)	ybhP‑II →	phosphohydrolase
RA	4,582,862	C→T	6.0%	intergenic (+78/+31)	PP_4057 → / ← glgB	membrane protein/1,4‑alpha‑glucan branching enzyme
RA	4,591,050	A→G	10.3%	intergenic (+140/+77)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,591,075	T→G	13.4%	intergenic (+165/+52)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,592,690	G→T	6.4%	R40R (CGC→CGA) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,592,692	G→C	6.5%	R40G (CGC→GGC) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,592,693	G→C	6.5%	S39S (TCC→TCG) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,592,695	A→C	6.7%	S39A (TCC→GCC) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,612,400	A→C	5.3%	R26S (AGA→AGC)	PP_4079 →	hypothetical protein
RA	4,612,407	A→T	5.5%	K29* (AAG→TAG) ‡	PP_4079 →	hypothetical protein
RA	4,612,408	A→T	5.1%	K29M (AAG→ATG) ‡	PP_4079 →	hypothetical protein
RA	4,617,249	T→G	5.1%	intergenic (+1216/‑891)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,637,492	C→T	6.9%	intergenic (+102/+57)	PP_4096 → / ← PP_t59	hypothetical protein/tRNA‑Gly
RA	4,637,493	G→T	7.0%	intergenic (+103/+56)	PP_4096 → / ← PP_t59	hypothetical protein/tRNA‑Gly
RA	4,637,494	A→C	7.0%	intergenic (+104/+55)	PP_4096 → / ← PP_t59	hypothetical protein/tRNA‑Gly
RA	4,637,495	A→G	6.8%	intergenic (+105/+54)	PP_4096 → / ← PP_t59	hypothetical protein/tRNA‑Gly
RA	4,640,692	A→T	87.0%	M20K (ATG→AAG)	uvrY ←	BarA/UvrY two‑componenent system response regulator
RA	4,668,357	A→C	5.3%	E742D (GAA→GAC)	nuoG →	NADH‑quinone oxidoreductase subunit G
RA	4,678,544	G→C	5.7%	P107P (CCG→CCC)	PP_4137 →	outer membrane siderophore receptor
RA	4,678,545	G→C	5.3%	G108R (GGG→CGG) ‡	PP_4137 →	outer membrane siderophore receptor
RA	4,678,546	G→C	5.4%	G108A (GGG→GCG) ‡	PP_4137 →	outer membrane siderophore receptor
RA	4,680,330	T→G	6.3%	intergenic (+34/+70)	PP_4137 → / ← chrR	outer membrane siderophore receptor/chromate reductase
RA	4,680,331	T→C	5.6%	intergenic (+35/+69)	PP_4137 → / ← chrR	outer membrane siderophore receptor/chromate reductase
RA	4,680,332	G→T	9.1%	intergenic (+36/+68)	PP_4137 → / ← chrR	outer membrane siderophore receptor/chromate reductase
RA	4,680,337	T→C	5.6%	intergenic (+41/+63)	PP_4137 → / ← chrR	outer membrane siderophore receptor/chromate reductase
RA	4,680,339	C→A	6.0%	intergenic (+43/+61)	PP_4137 → / ← chrR	outer membrane siderophore receptor/chromate reductase
RA	4,680,340	C→T	5.5%	intergenic (+44/+60)	PP_4137 → / ← chrR	outer membrane siderophore receptor/chromate reductase
RA	4,686,784:1	+C	6.6%	coding (79/1431 nt)	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,686,790	T→A	6.9%	L29M (TTG→ATG) ‡	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,686,791	T→A	6.9%	L29* (TTG→TAG) ‡	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,710,408	T→A	11.7%	intergenic (‑151/+26)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,710,409	T→A	11.4%	intergenic (‑152/+25)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,710,419	A→G	8.3%	intergenic (‑162/+15)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,710,420	G→A	7.1%	intergenic (‑163/+14)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,718,783	T→C	5.1%	W674R (TGG→CGG) ‡	PP_4171 →	hypothetical protein
RA	4,718,784	G→T	5.1%	W674L (TGG→TTG) ‡	PP_4171 →	hypothetical protein
RA	4,718,787	A→C	5.0%	Q675P (CAG→CCG) ‡	PP_4171 →	hypothetical protein
RA	4,718,788	G→A	5.2%	Q675Q (CAG→CAA) ‡	PP_4171 →	hypothetical protein
RA	4,726,628	C→T	5.5%	intergenic (‑38/+26)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,726,629	G→T	5.5%	intergenic (‑39/+25)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,726,630	A→C	5.3%	intergenic (‑40/+24)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,726,631	A→G	5.3%	intergenic (‑41/+23)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,730,035	G→A	8.5%	intergenic (+25/+43)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,730,036	A→T	8.3%	intergenic (+26/+42)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,730,037	T→C	8.3%	intergenic (+27/+41)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,745,790	T→G	5.6%	intergenic (+32/+720)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,745,833	C→G	20.6%	intergenic (+75/+677)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,745,835	T→A	21.1%	intergenic (+77/+675)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,745,836	T→A	20.8%	intergenic (+78/+674)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,745,838	C→G	22.5%	intergenic (+80/+672)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,222:1	+C	100%	intergenic (+464/+288)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,224	A→G	100%	intergenic (+466/+286)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,226	C→T	100%	intergenic (+468/+284)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,229	C→T	100%	intergenic (+471/+281)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,232	C→G	100%	intergenic (+474/+278)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,234	2 bp→CT	100%	intergenic (+476/+275)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,248	C→T	100%	intergenic (+490/+262)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,250	A→C	100%	intergenic (+492/+260)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,253	2 bp→GC	100%	intergenic (+495/+256)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,763,130	G→C	5.5%	R470P (CGC→CCC)	ompQ →	outer membrane pyoverdine efflux protein
RA	4,763,135	G→C	5.4%	intergenic (+1/+20)	ompQ → / ← pvdP	outer membrane pyoverdine efflux protein/pyoverdine biosynthesis‑like protein
RA	4,763,418	C→G	5.6%	V454L (GTG→CTG)	pvdP ←	pyoverdine biosynthesis‑like protein
RA	4,763,419	G→T	5.6%	V453V (GTC→GTA) ‡	pvdP ←	pyoverdine biosynthesis‑like protein
RA	4,763,420	A→C	5.4%	V453G (GTC→GGC) ‡	pvdP ←	pyoverdine biosynthesis‑like protein
RA	4,763,421	C→G	5.6%	V453L (GTC→CTC) ‡	pvdP ←	pyoverdine biosynthesis‑like protein
RA	4,801,598	A→G	13.5%	intergenic (‑162/+56)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,801,606	C→T	23.7%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,801,608	G→C	24.2%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,801,611	G→C	24.8%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,801,613	A→G	25.5%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,801,621	C→T	18.6%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,817,177	C→T	5.1%	intergenic (+103/‑290)	PP_4238 → / → PP_5665	hypothetical protein/McbA family microcin B17‑like processing protein
RA	4,817,178	A→T	5.2%	intergenic (+104/‑289)	PP_4238 → / → PP_5665	hypothetical protein/McbA family microcin B17‑like processing protein
RA	4,817,179	A→G	5.2%	intergenic (+105/‑288)	PP_4238 → / → PP_5665	hypothetical protein/McbA family microcin B17‑like processing protein
RA	4,823,214	C→T	5.2%	intergenic (+121/+16)	PP_4242 → / ← pvdL	conserved protein of unknown function with Rhs repeat‑associated core domain/non‑ribosomal peptide synthetase
RA	4,823,215	A→T	5.2%	intergenic (+122/+15)	PP_4242 → / ← pvdL	conserved protein of unknown function with Rhs repeat‑associated core domain/non‑ribosomal peptide synthetase
RA	4,823,216	A→G	5.2%	intergenic (+123/+14)	PP_4242 → / ← pvdL	conserved protein of unknown function with Rhs repeat‑associated core domain/non‑ribosomal peptide synthetase
RA	4,837,037	C→A	5.6%	intergenic (+18/+134)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,837,040	C→G	6.4%	intergenic (+21/+131)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,837,048	A→T	8.0%	intergenic (+29/+123)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,837,051	T→A	7.8%	intergenic (+32/+120)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,837,054	A→T	8.0%	intergenic (+35/+117)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,837,062	C→G	6.8%	intergenic (+43/+109)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,837,065	T→G	5.2%	intergenic (+46/+106)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,847,890	Δ1 bp	29.8%	intergenic (+40/‑257)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,847,891	A→C	9.0%	intergenic (+41/‑256)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,847,898:1	+G	27.4%	intergenic (+48/‑249)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,853,600	A→T	5.3%	intergenic (+11/‑95)	PP_4263 → / → hemN	cytochrome biogenesis protein/oxygen‑independent coproporphyrinogen III dehydrogenase
RA	4,853,601	A→T	5.4%	intergenic (+12/‑94)	PP_4263 → / → hemN	cytochrome biogenesis protein/oxygen‑independent coproporphyrinogen III dehydrogenase
RA	4,853,602	A→T	5.8%	intergenic (+13/‑93)	PP_4263 → / → hemN	cytochrome biogenesis protein/oxygen‑independent coproporphyrinogen III dehydrogenase
RA	4,853,628	T→A	5.4%	intergenic (+39/‑67)	PP_4263 → / → hemN	cytochrome biogenesis protein/oxygen‑independent coproporphyrinogen III dehydrogenase
RA	4,857,452	G→T	12.3%	intergenic (‑129/+168)	recR ← / ← ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
RA	4,857,453	A→T	10.7%	intergenic (‑130/+167)	recR ← / ← ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
RA	4,857,454	A→C	23.9%	intergenic (‑131/+166)	recR ← / ← ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
RA	4,866,147	C→T	7.4%	intergenic (‑104/+133)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,153	G→T	7.0%	intergenic (‑110/+127)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,154	G→A	7.0%	intergenic (‑111/+126)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,156	G→A	7.5%	intergenic (‑113/+124)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,161	Δ1 bp	7.4%	intergenic (‑118/+119)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,172:1	+A	8.6%	intergenic (‑129/+108)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,173	G→T	8.3%	intergenic (‑130/+107)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,177	A→T	9.4%	intergenic (‑134/+103)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,178	T→C	9.1%	intergenic (‑135/+102)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,180	T→C	9.4%	intergenic (‑137/+100)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,181	A→C	9.9%	intergenic (‑138/+99)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,183	C→T	9.4%	intergenic (‑140/+97)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,187	A→G	11.8%	intergenic (‑144/+93)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,878,155	G→C	5.1%	T153T (ACC→ACG) ‡	aqpZ ←	aquaporin Z
RA	4,878,157	T→A	5.0%	T153S (ACC→TCC) ‡	aqpZ ←	aquaporin Z
RA	4,881,387	T→A	6.2%	intergenic (+231/+206)	PP_4284 → / ← pucM	transporter/5‑hydroxyisourate hydrolase
RA	4,889,956	T→G	6.0%	E139A (GAA→GCA) ‡	yedI ←	inner membrane protein
RA	4,889,957	C→A	5.5%	E139* (GAA→TAA) ‡	yedI ←	inner membrane protein
RA	4,898,635	A→T	5.3%	intergenic (+116/‑92)	pyk → / → PP_4302	pyruvate kinase/urea transporter
RA	4,898,636	A→T	5.2%	intergenic (+117/‑91)	pyk → / → PP_4302	pyruvate kinase/urea transporter
RA	4,898,637	A→T	5.2%	intergenic (+118/‑90)	pyk → / → PP_4302	pyruvate kinase/urea transporter
RA	4,901,393	T→C	9.7%	intergenic (+32/‑176)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,901,416	T→C	5.4%	intergenic (+55/‑153)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,901,419	G→A	5.4%	intergenic (+58/‑150)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,901,439	G→A	12.7%	intergenic (+78/‑130)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,905,059	A→G	18.2%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,905,063	G→A	16.5%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,905,064	T→C	16.3%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,905,068	C→T	17.0%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,914,915	C→G	5.5%	intergenic (+314/+165)	PP_4318 → / ← PP_4319	transposase/hypothetical protein
RA	4,914,916	C→G	5.5%	intergenic (+315/+164)	PP_4318 → / ← PP_4319	transposase/hypothetical protein
RA	4,950,610	C→G	7.5%	R322P (CGG→CCG)	flhB ←	flagellin export apparatus substrate specificity protein
RA	4,950,615	C→T	7.0%	L320L (CTG→CTA) ‡	flhB ←	flagellin export apparatus substrate specificity protein
RA	4,950,616	A→G	7.7%	L320P (CTG→CCG) ‡	flhB ←	flagellin export apparatus substrate specificity protein
RA	4,950,621	C→G	7.1%	P318P (CCG→CCC)	flhB ←	flagellin export apparatus substrate specificity protein
RA	4,955,966	T→G	18.6%	intergenic (‑122/+35)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,955,967	C→A	13.8%	intergenic (‑123/+34)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,963,588	T→G	6.6%	M36L (ATG→CTG)	fliG ←	flagellar motor switch protein
RA	4,963,593	C→T	6.3%	R34Q (CGG→CAG)	fliG ←	flagellar motor switch protein
RA	4,963,596	A→G	6.4%	L33P (CTG→CCG)	fliG ←	flagellar motor switch protein
RA	4,963,601	C→A	6.1%	Q31H (CAG→CAT)	fliG ←	flagellar motor switch protein
RA	4,969,573	C→T	17.1%	R260H (CGT→CAT)	fleQ ←	transcriptional regulator FleQ
RA	4,975,591	G→C	6.1%	intergenic (‑355/+39)	fliC ← / ← PP_4379	flagellin/3‑oxoacyl‑ACP synthase
RA	4,975,597	T→C	6.0%	intergenic (‑361/+33)	fliC ← / ← PP_4379	flagellin/3‑oxoacyl‑ACP synthase
RA	4,975,598	G→C	6.0%	intergenic (‑362/+32)	fliC ← / ← PP_4379	flagellin/3‑oxoacyl‑ACP synthase
RA	4,975,599	G→A	6.1%	intergenic (‑363/+31)	fliC ← / ← PP_4379	flagellin/3‑oxoacyl‑ACP synthase
RA	4,975,605	G→C	6.1%	intergenic (‑369/+25)	fliC ← / ← PP_4379	flagellin/3‑oxoacyl‑ACP synthase
RA	4,985,586	T→A	5.7%	intergenic (‑31/+40)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,985,587	T→A	5.5%	intergenic (‑32/+39)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,985,588	T→A	5.1%	intergenic (‑33/+38)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,990,844:1	+C	5.8%	coding (89/753 nt)	flgA →	flagella basal body P‑ring formation protein
RA	4,990,848	G→C	6.0%	T31T (ACG→ACC)	flgA →	flagella basal body P‑ring formation protein
RA	4,990,851	Δ1 bp	6.0%	coding (96/753 nt)	flgA →	flagella basal body P‑ring formation protein
RA	4,993,359	G→C	6.6%	intergenic (+32/+62)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,993,360	C→A	6.6%	intergenic (+33/+61)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,993,361	T→G	6.6%	intergenic (+34/+60)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,993,362	G→C	6.2%	intergenic (+35/+59)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	5,000,519	C→G	7.9%	R396G (CGC→GGC) ‡	bkdB →	branched‑chain alpha‑keto acid dehydrogenase complex lipoamide acyltransferase
RA	5,000,520	G→C	7.4%	R396P (CGC→CCC) ‡	bkdB →	branched‑chain alpha‑keto acid dehydrogenase complex lipoamide acyltransferase
RA	5,000,521	C→G	7.4%	R396R (CGC→CGG) ‡	bkdB →	branched‑chain alpha‑keto acid dehydrogenase complex lipoamide acyltransferase
RA	5,035,745	A→G	7.1%	intergenic (+34/‑461)	PP_4433 → / → dadA‑I	amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA	5,035,748	C→T	6.8%	intergenic (+37/‑458)	PP_4433 → / → dadA‑I	amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA	5,082,231	G→T	6.3%	intergenic (+29/+79)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,082,234	A→C	6.2%	intergenic (+32/+76)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,084,123	T→A	6.3%	intergenic (‑371/+26)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,084,126	T→A	6.3%	intergenic (‑374/+23)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,084,426	G→T	12.6%	intergenic (‑51/+24)	PP_t55 ← / ← PP_t54	tRNA‑Arg/tRNA‑Arg
RA	5,102,219	G→C	7.2%	intergenic (+213/+79)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,222	G→T	9.2%	intergenic (+216/+76)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,228	G→C	8.4%	intergenic (+222/+70)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,229	G→T	10.2%	intergenic (+223/+69)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,231	Δ1 bp	8.2%	intergenic (+225/+67)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,235:1	+G	7.9%	intergenic (+229/+63)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,237	A→C	13.8%	intergenic (+231/+61)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,238	G→C	9.0%	intergenic (+232/+60)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,244	A→C	9.4%	intergenic (+238/+54)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,247	G→C	9.6%	intergenic (+241/+51)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,104,614	A→C	6.8%	intergenic (‑226/‑43)	acsA‑I ← / → PP_4488	acetyl‑CoA synthetase/hypothetical protein
RA	5,104,932	T→G	15.3%	intergenic (+21/+132)	PP_4488 → / ← phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	5,104,933	G→C	7.2%	intergenic (+22/+131)	PP_4488 → / ← phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	5,105,035	A→G	5.2%	intergenic (+124/+29)	PP_4488 → / ← phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	5,105,036	A→T	5.1%	intergenic (+125/+28)	PP_4488 → / ← phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	5,105,037	C→T	5.1%	intergenic (+126/+27)	PP_4488 → / ← phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	5,130,083	C→T	7.0%	intergenic (+60/‑122)	PP_4511 → / → PP_4512	AraC family transcriptional regulator/DMT superfamily permease
RA	5,130,096	C→A	5.7%	intergenic (+73/‑109)	PP_4511 → / → PP_4512	AraC family transcriptional regulator/DMT superfamily permease
RA	5,164,776	G→C	6.4%	intergenic (+42/+64)	PP_4542 → / ← PP_4543	ABC transporter ATP‑binding protein/permease/hypothetical protein
RA	5,164,783	T→G	10.1%	intergenic (+49/+57)	PP_4542 → / ← PP_4543	ABC transporter ATP‑binding protein/permease/hypothetical protein
RA	5,164,785	T→A	5.0%	intergenic (+51/+55)	PP_4542 → / ← PP_4543	ABC transporter ATP‑binding protein/permease/hypothetical protein
RA	5,164,792	A→T	10.0%	intergenic (+58/+48)	PP_4542 → / ← PP_4543	ABC transporter ATP‑binding protein/permease/hypothetical protein
RA	5,167,566	C→T	17.7%	intergenic (+92/+109)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,178,241	T→C	14.1%	intergenic (‑285/+47)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,178,244	G→C	13.5%	intergenic (‑288/+44)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,178,245	G→C	13.4%	intergenic (‑289/+43)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,178,248	G→A	13.1%	intergenic (‑292/+40)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,186,143	A→T	5.1%	L266H (CTC→CAC)	PP_4560 ←	ribonuclease BN
RA	5,186,146	A→T	5.6%	L265Q (CTG→CAG)	PP_4560 ←	ribonuclease BN
RA	5,186,149	A→T	5.1%	L264Q (CTG→CAG)	PP_4560 ←	ribonuclease BN
RA	5,186,152	A→T	5.1%	V263E (GTG→GAG)	PP_4560 ←	ribonuclease BN
RA	5,187,056	G→T	11.8%	intergenic (‑117/+37)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,187,062	T→G	16.2%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,187,063	C→A	15.7%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,187,069	A→C	11.3%	intergenic (‑130/+24)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,189,107	A→C	6.2%	M83L (ATG→CTG)	PP_4564 →	lipoprotein
RA	5,189,114	C→T	6.9%	A85V (GCC→GTC)	PP_4564 →	lipoprotein
RA	5,189,117	A→G	6.7%	D86G (GAC→GGC)	PP_4564 →	lipoprotein
RA	5,189,124	G→T	5.7%	Q88H (CAG→CAT)	PP_4564 →	lipoprotein
RA	5,192,969	A→T	6.0%	E159D (GAA→GAT)	PP_4567 →	hypothetical protein
RA	5,192,976	T→G	6.0%	L162V (TTG→GTG) ‡	PP_4567 →	hypothetical protein
RA	5,192,977	T→C	6.0%	L162S (TTG→TCG) ‡	PP_4567 →	hypothetical protein
RA	5,192,980	G→A	6.1%	R163H (CGC→CAC) ‡	PP_4567 →	hypothetical protein
RA	5,192,981	C→A	6.1%	R163R (CGC→CGA) ‡	PP_4567 →	hypothetical protein
RA	5,192,988	A→T	6.1%	I166F (ATC→TTC)	PP_4567 →	hypothetical protein
RA	5,192,992	C→T	5.8%	P167L (CCC→CTC)	PP_4567 →	hypothetical protein
RA	5,197,754	C→A	6.2%	intergenic (+138/‑64)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,197,756	T→G	11.5%	intergenic (+140/‑62)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,197,764	C→G	5.6%	intergenic (+148/‑54)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,199,884	T→G	12.4%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,199,885	C→A	10.8%	intergenic (+30/+23)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,204,642	G→C	10.6%	intergenic (+20/+53)	PP_4579 → / ← PP_4580	LysR family transcriptional regulator/hypothetical protein
RA	5,215,290	T→G	8.3%	intergenic (‑159/+19)	rnd ← / ← PP_4592	ribonuclease D/metal dependent hydrolase
RA	5,216,752	G→A	80.6%	A65A (GCC→GCT)	PP_4592 ←	metal dependent hydrolase
RA	5,217,469	C→T	5.1%	intergenic (+36/+58)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,217,472	G→A	5.0%	intergenic (+39/+55)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,217,484	A→G	10.0%	intergenic (+51/+43)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,217,485	C→A	10.3%	intergenic (+52/+42)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,217,488	T→G	10.4%	intergenic (+55/+39)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,217,489	C→T	10.1%	intergenic (+56/+38)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,217,501	T→C	6.2%	intergenic (+68/+26)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,217,504	A→G	5.7%	intergenic (+71/+23)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,234,176	G→A	5.8%	intergenic (‑121/+55)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,234,188	Δ1 bp	11.7%	intergenic (‑133/+43)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,234,192	C→G	12.2%	intergenic (‑137/+39)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,234,195	C→G	12.4%	intergenic (‑140/+36)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,234,198:1	+C	12.7%	intergenic (‑143/+33)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,244,881	G→A	8.9%	A144V (GCG→GTG)	ldh ←	leucine dehydrogenase
RA	5,244,886	T→C	8.8%	P142P (CCA→CCG)	ldh ←	leucine dehydrogenase
RA	5,278,042	Δ1 bp	5.3%	coding (192/1125 nt)	rlmG →	ribosomal RNA large subunit methyltransferase G
RA	5,279,042	C→G	11.3%	intergenic (+67/+39)	rlmG → / ← PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
RA	5,279,054	C→G	11.2%	intergenic (+79/+27)	rlmG → / ← PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
RA	5,293,407	T→A	6.0%	intergenic (‑91/+93)	PP_4660 ← / ← mdaB	LysR family transcriptional regulator/drug activity modulator B
RA	5,294,586	A→T	7.6%	L246H (CTC→CAC)	PP_4663 ←	transmembrane protein
RA	5,312,338	C→G	5.5%	intergenic (‑90/+96)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,312,340	G→A	5.7%	intergenic (‑92/+94)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,312,341	T→C	5.7%	intergenic (‑93/+93)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,312,343	C→G	5.6%	intergenic (‑95/+91)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,318,273	C→G	10.8%	intergenic (‑595/+119)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,318,276	C→G	10.9%	intergenic (‑598/+116)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,321,049	C→T	6.7%	intergenic (‑120/+31)	PP_4677 ← / ← ilvC	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/ketol‑acid reductoisomerase
RA	5,321,050	G→T	6.7%	intergenic (‑121/+30)	PP_4677 ← / ← ilvC	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/ketol‑acid reductoisomerase
RA	5,321,051	A→C	6.7%	intergenic (‑122/+29)	PP_4677 ← / ← ilvC	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/ketol‑acid reductoisomerase
RA	5,321,052	A→G	6.7%	intergenic (‑123/+28)	PP_4677 ← / ← ilvC	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/ketol‑acid reductoisomerase
RA	5,330,508	T→A	8.1%	noncoding (133/149 nt)	PP_mr52 →	PrrF ncRNA
RA	5,349,464	C→G	9.4%	intergenic (+42/‑136)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,468	C→T	11.1%	intergenic (+46/‑132)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,477	A→G	11.0%	intergenic (+55/‑123)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,481	C→G	11.8%	intergenic (+59/‑119)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,486	Δ1 bp	10.4%	intergenic (+64/‑114)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,487	Δ1 bp	10.3%	intergenic (+65/‑113)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,351,633	C→G	6.2%	L20V (CTC→GTC) ‡	PP_4703 →	hypothetical protein
RA	5,351,634	T→A	5.8%	L20H (CTC→CAC) ‡	PP_4703 →	hypothetical protein
RA	5,351,635	C→G	5.8%	L20L (CTC→CTG) ‡	PP_4703 →	hypothetical protein
RA	5,366,068	A→T	5.4%	intergenic (‑78/+23)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,366,069	A→T	5.4%	intergenic (‑79/+22)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,385,159	C→T	6.9%	intergenic (+73/+35)	recN → / ← fur	DNA repair/recombination protein/ferric iron uptake global transcriptional repressor Fur
RA	5,385,160	G→T	6.5%	intergenic (+74/+34)	recN → / ← fur	DNA repair/recombination protein/ferric iron uptake global transcriptional repressor Fur
RA	5,385,161	A→C	6.5%	intergenic (+75/+33)	recN → / ← fur	DNA repair/recombination protein/ferric iron uptake global transcriptional repressor Fur
RA	5,385,162	A→G	6.5%	intergenic (+76/+32)	recN → / ← fur	DNA repair/recombination protein/ferric iron uptake global transcriptional repressor Fur
RA	5,386,264	T→C	6.4%	intergenic (+32/+33)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,386,265	T→A	6.4%	intergenic (+33/+32)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,386,266	G→A	6.3%	intergenic (+34/+31)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,423,815	G→T	5.2%	P85T (CCT→ACT)	PP_4758 ←	MFS transporter
RA	5,423,816	T→A	5.2%	V84V (GTA→GTT) ‡	PP_4758 ←	MFS transporter
RA	5,423,817	A→C	5.2%	V84G (GTA→GGA) ‡	PP_4758 ←	MFS transporter
RA	5,435,389	A→G	8.3%	intergenic (‑74/+87)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,435,393	A→G	7.2%	intergenic (‑78/+83)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,435,394:1	+A	7.4%	intergenic (‑79/+82)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,435,401	Δ1 bp	6.6%	intergenic (‑86/+75)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,435,403	C→T	6.7%	intergenic (‑88/+73)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,435,407	C→T	6.7%	intergenic (‑92/+69)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,451,286	T→G	13.2%	L145R (CTG→CGG)	thiE →	thiamine‑phosphate synthase
RA	5,451,289	T→G	11.6%	L146R (CTC→CGC)	thiE →	thiamine‑phosphate synthase
RA	5,451,292	A→C	13.0%	E147A (GAG→GCG)	thiE →	thiamine‑phosphate synthase
RA	5,451,295	A→C	11.2%	Q148P (CAG→CCG)	thiE →	thiamine‑phosphate synthase
RA	5,456,609	A→G	5.7%	E48G (GAG→GGG)	lnt →	apolipoprotein N‑acyltransferase
RA	5,456,613	C→G	5.4%	L49L (CTC→CTG)	lnt →	apolipoprotein N‑acyltransferase
RA	5,456,617	C→T	5.4%	P51S (CCG→TCG)	lnt →	apolipoprotein N‑acyltransferase
RA	5,463,889:1	+A	5.6%	intergenic (+17/‑45)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,464,557	T→G	7.8%	intergenic (+18/‑22)	PP_4795 → / → holA	lipoprotein/DNA polymerase III subunit delta
RA	5,464,558	C→A	5.5%	intergenic (+19/‑21)	PP_4795 → / → holA	lipoprotein/DNA polymerase III subunit delta
RA	5,477,153	T→A	8.3%	K95M (AAG→ATG) ‡	rlmH ←	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA	5,477,154	T→A	7.6%	K95* (AAG→TAG) ‡	rlmH ←	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA	5,478,805	G→A	5.2%	N329N (AAC→AAT) ‡	proA ←	gamma‑glutamyl phosphate reductase
RA	5,478,806	T→A	5.2%	N329I (AAC→ATC) ‡	proA ←	gamma‑glutamyl phosphate reductase
RA	5,478,807	T→C	5.2%	N329D (AAC→GAC) ‡	proA ←	gamma‑glutamyl phosphate reductase
RA	5,478,814	G→A	5.2%	D326D (GAC→GAT)	proA ←	gamma‑glutamyl phosphate reductase
RA	5,486,254	T→G	10.1%	V249G (GTA→GGA)	PP_4819 →	hypothetical protein
RA	5,490,134	C→G	9.5%	intergenic (+43/‑104)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,146	T→A	7.1%	intergenic (+55/‑92)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,147	A→G	17.3%	intergenic (+56/‑91)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,150	A→G	20.4%	intergenic (+59/‑88)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,151	T→C	16.7%	intergenic (+60/‑87)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,156	G→A	20.8%	intergenic (+65/‑82)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,159	T→C	24.5%	intergenic (+68/‑79)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,164	G→A	16.2%	intergenic (+73/‑74)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,165	C→T	14.4%	intergenic (+74/‑73)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,168	C→T	14.6%	intergenic (+77/‑70)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,508,139	C→G	5.2%	A31G (GCC→GGC)	oprC →	copper receptor OprC
RA	5,511,474	T→G	7.5%	M435R (ATG→AGG)	PP_4839 →	iron‑regulated membrane protein
RA	5,512,601	G→C	5.9%	A289P (GCG→CCG)	cycA →	D‑alanine/beta‑alanine/D‑serine/glycine permease
RA	5,512,604	G→C	5.9%	A290P (GCG→CCG)	cycA →	D‑alanine/beta‑alanine/D‑serine/glycine permease
RA	5,514,902	T→G	9.2%	L35R (CTG→CGG)	urtB →	urea ABC transporter permease
RA	5,523,731	T→A	6.2%	K59N (AAA→AAT) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,523,732	T→A	6.2%	K59I (AAA→ATA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,523,733	T→A	6.4%	K59* (AAA→TAA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,530,476	T→C	6.7%	R89R (CGT→CGC)	PP_4858 →	hypothetical protein
RA	5,542,042	T→G	9.7%	intergenic (+22/+81)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,055	A→G	6.1%	intergenic (+35/+68)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,058	A→C	12.4%	intergenic (+38/+65)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,059	G→C	6.8%	intergenic (+39/+64)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,064	A→G	9.4%	intergenic (+44/+59)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,072	G→C	10.7%	intergenic (+52/+51)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,543,530	T→A	5.1%	intergenic (+23/+98)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,543,571	A→T	7.9%	intergenic (+64/+57)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,554,602	T→A	5.4%	intergenic (+18/‑154)	PP_t47 → / → PP_4881	tRNA‑Leu/iron ABC transporter substrate‑binding protein
RA	5,554,603	T→A	5.6%	intergenic (+19/‑153)	PP_t47 → / → PP_4881	tRNA‑Leu/iron ABC transporter substrate‑binding protein
RA	5,557,910	T→G	11.0%	intergenic (+576/+85)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,557,912	C→A	8.2%	intergenic (+578/+83)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,560,601	T→A	9.4%	intergenic (‑80/+94)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,560,602	A→T	5.3%	intergenic (‑81/+93)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,562,924	T→G	6.1%	intergenic (‑295/+36)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,563,372	C→A	5.6%	R294L (CGT→CTT)	purA ←	adenylosuccinate synthetase
RA	5,563,375	T→G	6.0%	K293T (AAG→ACG)	purA ←	adenylosuccinate synthetase
RA	5,570,749	G→A	7.7%	H579H (CAC→CAT)	mutL ←	DNA mismatch repair protein MutL
RA	5,570,754	A→T	8.0%	C578S (TGC→AGC)	mutL ←	DNA mismatch repair protein MutL
RA	5,570,755	A→T	7.7%	A577A (GCT→GCA)	mutL ←	DNA mismatch repair protein MutL
RA	5,570,760	T→C	7.5%	M576V (ATG→GTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,571,413	T→A	8.8%	Q358L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,571,416	T→A	8.7%	Q357L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,574,872	T→G	15.4%	N126T (AAC→ACC)	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,575,177	T→G	5.3%	A24A (GCA→GCC) ‡	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,575,178	G→C	5.3%	A24G (GCA→GGA) ‡	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,575,179	C→A	5.3%	A24S (GCA→TCA) ‡	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,595,528	C→G	7.1%	V66L (GTG→CTG)	pde ←	3',5'‑cyclic‑nucleotide phosphodiesterase
RA	5,595,529	G→C	7.1%	S65R (AGC→AGG) ‡	pde ←	3',5'‑cyclic‑nucleotide phosphodiesterase
RA	5,595,530	C→G	7.2%	S65T (AGC→ACC) ‡	pde ←	3',5'‑cyclic‑nucleotide phosphodiesterase
RA	5,613,300	G→C	5.1%	intergenic (‑162/+26)	cyaB ← / ← waaA	cyclolysin secretion/processing ATP‑binding protein CyaB/3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,619,048	A→G	5.3%	intergenic (+30/+52)	PP_4933 → / ← hldE	hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,619,055	A→T	5.8%	intergenic (+37/+45)	PP_4933 → / ← hldE	hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,619,056	A→T	5.6%	intergenic (+38/+44)	PP_4933 → / ← hldE	hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,628,395	G→T	6.0%	R115R (CGG→AGG)	PP_4941 ←	hypothetical protein
RA	5,628,396	A→C	6.3%	P114P (CCT→CCG)	PP_4941 ←	hypothetical protein
RA	5,639,457	T→G	7.3%	intergenic (+33/+350)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,639,458	C→A	7.2%	intergenic (+34/+349)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,648,261	G→A	11.8%	intergenic (+46/‑77)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,262	C→T	11.6%	intergenic (+47/‑76)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,263	A→G	12.0%	intergenic (+48/‑75)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,267	A→C	11.9%	intergenic (+52/‑71)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,270	G→T	11.8%	intergenic (+55/‑68)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,274	C→T	11.7%	intergenic (+59/‑64)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,275	A→G	11.6%	intergenic (+60/‑63)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,276	T→C	11.8%	intergenic (+61/‑62)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,290	G→A	5.9%	intergenic (+75/‑48)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,653,209	G→C	5.1%	intergenic (+16/+8)	elaA → / ← PP_4957	acetyltransferase/hypothetical protein
RA	5,656,374	T→G	9.5%	intergenic (‑182/+31)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,656,377	C→A	8.7%	intergenic (‑185/+28)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,657,959	G→A	7.0%	intergenic (‑60/+101)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,960	T→G	6.8%	intergenic (‑61/+100)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,963	A→T	10.7%	intergenic (‑64/+97)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,965	T→C	6.8%	intergenic (‑66/+95)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,966	G→A	6.8%	intergenic (‑67/+94)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,968	A→T	9.5%	intergenic (‑69/+92)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,971	C→A	6.8%	intergenic (‑72/+89)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,972	T→C	6.6%	intergenic (‑73/+88)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,660,626:1	+A	19.8%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,660,631	T→G	27.3%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,660,636	C→A	28.5%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,660,641	Δ1 bp	24.2%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,663,116	T→G	6.0%	H57Q (CAT→CAG)	sahR →	methionine metabolism transcriptional regulator
RA	5,663,122	C→T	5.7%	L59L (CTC→CTT)	sahR →	methionine metabolism transcriptional regulator
RA	5,663,123	A→G	5.7%	K60E (AAG→GAG)	sahR →	methionine metabolism transcriptional regulator
RA	5,665,182	G→T	10.2%	intergenic (+35/‑194)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,665,185	A→C	9.5%	intergenic (+38/‑191)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,675,453	G→A	7.0%	intergenic (+42/‑43)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,675,457	A→T	6.5%	intergenic (+46/‑39)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,675,458	T→A	6.7%	intergenic (+47/‑38)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,675,459	A→T	6.5%	intergenic (+48/‑37)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,675,463	T→C	6.6%	intergenic (+52/‑33)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,676,666	T→G	7.6%	intergenic (+85/‑85)	PP_4978 → / → PP_4979	hypothetical protein/substrate‑binding protein
RA	5,676,668	C→A	5.5%	intergenic (+87/‑83)	PP_4978 → / → PP_4979	hypothetical protein/substrate‑binding protein
RA	5,686,417	C→G	5.2%	intergenic (‑134/+74)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,686,426	T→G	6.8%	intergenic (‑143/+65)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,686,461	T→A	7.5%	intergenic (‑178/+30)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,689,799	C→T	5.0%	S700N (AGC→AAC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,689,809	G→C	7.0%	R697G (CGC→GGC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,689,811	C→T	7.1%	R696H (CGC→CAC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,689,814	T→A	6.7%	D695V (GAC→GTC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,689,817	A→G	6.5%	V694A (GTG→GCG)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,689,819	G→C	6.5%	A693A (GCC→GCG)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,703,786	A→G	5.7%	intergenic (+71/‑96)	hslU → / → PP_5002	protease HslVU ATPase subunit/hypothetical protein
RA	5,703,794	G→A	7.0%	intergenic (+79/‑88)	hslU → / → PP_5002	protease HslVU ATPase subunit/hypothetical protein
RA	5,703,797	G→A	8.6%	intergenic (+82/‑85)	hslU → / → PP_5002	protease HslVU ATPase subunit/hypothetical protein
RA	5,709,540	G→A	5.9%	intergenic (+60/+52)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,709,542	T→G	5.8%	intergenic (+62/+50)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,709,543	T→C	5.8%	intergenic (+63/+49)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,709,545	G→C	6.5%	intergenic (+65/+47)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,709,547	G→A	6.5%	intergenic (+67/+45)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,709,548	C→A	6.2%	intergenic (+68/+44)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,709,550	T→C	6.4%	intergenic (+70/+42)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,729,286	T→A	13.4%	intergenic (‑183/+111)	PP_5024 ← / ← opgH	amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H
RA	5,729,306	T→G	19.1%	intergenic (‑203/+91)	PP_5024 ← / ← opgH	amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H
RA	5,729,310	A→T	8.6%	intergenic (‑207/+87)	PP_5024 ← / ← opgH	amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H
RA	5,731,809:1	+G	5.7%	coding (162/2574 nt)	opgH ←	glucans biosynthesis glucosyltransferase H
RA	5,731,814	Δ1 bp	5.5%	coding (157/2574 nt)	opgH ←	glucans biosynthesis glucosyltransferase H
RA	5,739,061	A→C	11.7%	intergenic (‑82/+75)	proY ← / ← hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
RA	5,739,066	A→T	7.2%	intergenic (‑87/+70)	proY ← / ← hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
RA	5,739,087	T→G	8.4%	intergenic (‑108/+49)	proY ← / ← hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
RA	5,745,455	C→G	6.3%	intergenic (+15/+56)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,745,462	G→A	17.2%	intergenic (+22/+49)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,745,472	T→G	32.7%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,745,475	A→T	28.8%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,745,476	A→T	30.6%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,745,479	C→A	27.7%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,745,489	T→C	9.4%	intergenic (+49/+22)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,746,895	C→T	5.1%	E88E (GAG→GAA)	PP_5039 ←	hypothetical protein
RA	5,746,900	A→G	5.2%	F87L (TTC→CTC)	PP_5039 ←	hypothetical protein
RA	5,746,905	C→A	5.4%	R85L (CGC→CTC)	PP_5039 ←	hypothetical protein
RA	5,748,354	A→G	7.1%	intergenic (‑182/+65)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,355	C→T	6.4%	intergenic (‑183/+64)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,356	A→C	9.1%	intergenic (‑184/+63)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,357	G→T	5.3%	intergenic (‑185/+62)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,395	G→A	5.2%	intergenic (‑223/+24)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,399	T→C	5.8%	intergenic (‑227/+20)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,756,724	G→T	11.3%	intergenic (‑157/‑314)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,730	A→G	12.5%	intergenic (‑163/‑308)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,734	G→T	12.5%	intergenic (‑167/‑304)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,735	G→T	13.0%	intergenic (‑168/‑303)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,740	A→C	12.4%	intergenic (‑173/‑298)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,741	A→C	12.3%	intergenic (‑174/‑297)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,745	C→T	12.5%	intergenic (‑178/‑293)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,751	A→C	8.5%	intergenic (‑184/‑287)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,758,490	T→G	7.7%	intergenic (+46/‑320)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,758,491	C→A	7.6%	intergenic (+47/‑319)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,769,881	A→G	5.2%	D286G (GAC→GGC) ‡	ctpA →	carboxy‑terminal‑processing protease
RA	5,769,882	C→G	5.2%	D286E (GAC→GAG) ‡	ctpA →	carboxy‑terminal‑processing protease
RA	5,769,883	C→T	5.2%	P287S (CCG→TCG)	ctpA →	carboxy‑terminal‑processing protease
RA	5,776,155	T→G	12.3%	M605L (ATG→CTG)	betT‑I ←	choline transporter
RA	5,795,138	G→T	7.2%	intergenic (+12/+56)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,142	G→A	7.5%	intergenic (+16/+52)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,148	A→T	10.2%	intergenic (+22/+46)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,155	A→G	10.1%	intergenic (+29/+39)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,156	C→G	10.1%	intergenic (+30/+38)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,157	C→T	10.1%	intergenic (+31/+37)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,164	A→T	10.6%	intergenic (+38/+30)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,170	T→C	6.8%	intergenic (+44/+24)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,174	A→C	5.5%	intergenic (+48/+20)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,803,198	C→T	7.4%	intergenic (‑294/+80)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,803,203	T→C	8.2%	intergenic (‑299/+75)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,803,206	G→A	8.6%	intergenic (‑302/+72)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,803,211	A→G	7.1%	intergenic (‑307/+67)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,812,989	A→G	9.6%	intergenic (+119/+36)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,812,990	T→C	10.1%	intergenic (+120/+35)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,812,991	G→A	9.7%	intergenic (+121/+34)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,812,992	C→T	9.8%	intergenic (+122/+33)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,820,536	C→T	6.1%	intergenic (+15/+76)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,820,541	G→T	5.9%	intergenic (+20/+71)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,820,544	A→C	6.1%	intergenic (+23/+68)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,820,549	A→G	5.7%	intergenic (+28/+63)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,828,109	A→T	5.2%	S14C (AGC→TGC)	yggW →	coproporphyrinogen/heterocyclic compound oxidase
RA	5,830,242	A→T	5.0%	L79Q (CTG→CAG)	trmB ←	tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,854,051	C→T	6.6%	intergenic (+21/‑250)	rlmI → / → ilvD	ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA	5,854,052	C→G	6.5%	intergenic (+22/‑249)	rlmI → / → ilvD	ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA	5,854,053	A→G	6.5%	intergenic (+23/‑248)	rlmI → / → ilvD	ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA	5,875,298	G→C	7.1%	intergenic (+54/+80)	PP_5144 → / ← ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
RA	5,875,326	C→G	8.0%	intergenic (+82/+52)	PP_5144 → / ← ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
RA	5,875,332	A→T	11.7%	intergenic (+88/+46)	PP_5144 → / ← ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
RA	5,882,009	T→A	7.7%	intergenic (+26/+79)	rpiA → / ← PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
RA	5,889,985	T→G	7.1%	A53A (GCA→GCC) ‡	PP_5159 ←	hypothetical protein
RA	5,889,986	G→C	6.2%	A53G (GCA→GGA) ‡	PP_5159 ←	hypothetical protein
RA	5,889,987	C→A	5.8%	A53S (GCA→TCA) ‡	PP_5159 ←	hypothetical protein
RA	5,895,796	A→C	6.5%	intergenic (+79/+41)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,895,797	A→T	6.0%	intergenic (+80/+40)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,895,798	G→T	6.1%	intergenic (+81/+39)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,902,775	A→G	15.7%	intergenic (‑170/+64)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,778	G→A	15.5%	intergenic (‑173/+61)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,783	C→G	16.7%	intergenic (‑178/+56)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,784	G→C	15.1%	intergenic (‑179/+55)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,787	G→C	18.4%	intergenic (‑182/+52)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,788	C→G	15.7%	intergenic (‑183/+51)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,793	T→C	17.7%	intergenic (‑188/+46)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,796	C→T	15.1%	intergenic (‑191/+43)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,908,169	G→T	13.8%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,908,170	A→C	16.3%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,908,812	T→G	8.9%	intergenic (+63/+44)	PP_5176 → / ← spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
RA	5,919,129	C→T	6.0%	intergenic (+16/+137)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,919,131	C→G	6.0%	intergenic (+18/+135)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,919,133	A→G	6.6%	intergenic (+20/+133)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,943,665	C→A	5.2%	R407R (CGC→CGA)	rbbA →	ribosome‑associated ATPase
RA	5,953,687	T→A	5.8%	intergenic (‑63/+19)	PP_mr62 ← / ← trxA	Pseudomon‑Rho regulatory region/thioredoxin I
RA	5,953,688	T→A	5.6%	intergenic (‑64/+18)	PP_mr62 ← / ← trxA	Pseudomon‑Rho regulatory region/thioredoxin I
RA	5,965,000	A→T	8.7%	noncoding (74/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,965,001	A→T	8.9%	noncoding (73/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,968,851	T→G	5.0%	Y216D (TAT→GAT)	PP_5229 →	hypothetical protein
RA	5,973,424	C→G	6.5%	T51T (ACG→ACC)	PP_5723 ←	hypothetical protein
RA	5,985,176	T→C	6.0%	A272A (GCT→GCC)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,985,184	A→G	6.6%	Q275R (CAG→CGG) ‡	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,985,185	G→C	6.3%	Q275H (CAG→CAC) ‡	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,985,186	C→T	6.3%	R276W (CGG→TGG)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,989,441	T→C	20.6%	intergenic (+32/+57)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,989,447	G→A	20.9%	intergenic (+38/+51)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,989,449	T→C	20.6%	intergenic (+40/+49)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,989,452	G→A	20.1%	intergenic (+43/+46)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,989,454	T→C	20.8%	intergenic (+45/+44)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,989,460	G→A	18.1%	intergenic (+51/+38)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,993,814	G→A	31.7%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,824	T→C	31.7%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,829	C→T	30.6%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,830	G→T	30.7%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,831	C→T	30.8%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,834	A→G	30.1%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,840	G→C	31.7%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,842	C→G	31.9%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,845	C→T	31.7%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,849	C→G	31.3%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,853	C→T	31.4%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,855	C→T	30.7%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,894	C→A	30.2%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,899	C→T	32.5%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,900	A→G	32.1%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,910	T→C	33.4%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,916	Δ1 bp	34.1%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	6,002,194:1	+G	16.7%	intergenic (‑158/+42)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	6,002,199	Δ1 bp	16.9%	intergenic (‑163/+37)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	6,005,926	C→A	6.1%	intergenic (+28/+81)	PP_5256 → / ← amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
RA	6,009,992	T→G	10.9%	intergenic (+25/‑151)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,009,999	G→C	14.0%	intergenic (+32/‑144)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,010,002	A→T	14.1%	intergenic (+35/‑141)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,010,005	G→C	13.2%	intergenic (+38/‑138)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,010,012	C→A	9.9%	intergenic (+45/‑131)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,011,248	C→T	5.4%	A369V (GCC→GTC)	ydcJ →	metalloprotein
RA	6,011,252	A→G	5.4%	A370A (GCA→GCG)	ydcJ →	metalloprotein
RA	6,011,253	C→T	5.6%	R371C (CGC→TGC)	ydcJ →	metalloprotein
RA	6,011,257	A→G	6.9%	D372G (GAC→GGC)	ydcJ →	metalloprotein
RA	6,014,144:1	+G	16.0%	intergenic (+36/+46)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,014,148	T→C	14.5%	intergenic (+40/+42)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,014,149	T→C	14.6%	intergenic (+41/+41)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,014,154	G→A	15.7%	intergenic (+46/+36)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,014,155	G→A	14.4%	intergenic (+47/+35)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,015,033	T→A	5.1%	Q275H (CAA→CAT) ‡	PP_5263 ←	GGDEF domain‑containing protein
RA	6,015,034	T→A	5.3%	Q275L (CAA→CTA) ‡	PP_5263 ←	GGDEF domain‑containing protein
RA	6,018,841	G→A	17.9%	intergenic (+41/+69)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,843	A→G	17.8%	intergenic (+43/+67)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,850	G→C	17.6%	intergenic (+50/+60)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,851	T→G	19.7%	intergenic (+51/+59)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,852	C→T	17.5%	intergenic (+52/+58)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,857	A→G	16.4%	intergenic (+57/+53)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,858	C→A	17.0%	intergenic (+58/+52)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,859	G→C	17.7%	intergenic (+59/+51)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,866	C→T	16.3%	intergenic (+66/+44)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,868	T→C	16.6%	intergenic (+68/+42)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,024,075	A→C	5.1%	C44G (TGC→GGC)	dadX ←	alanine racemase
RA	6,024,080	A→G	5.0%	V42A (GTG→GCG)	dadX ←	alanine racemase
RA	6,024,284	A→C	6.3%	intergenic (‑80/+65)	dadX ← / ← dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
RA	6,026,705	T→G	6.2%	intergenic (‑51/‑93)	PP_5272 ← / → PP_5273	hypothetical protein/oxidoreductase
RA	6,026,706	C→A	6.2%	intergenic (‑52/‑92)	PP_5272 ← / → PP_5273	hypothetical protein/oxidoreductase
RA	6,028,164	G→A	6.5%	intergenic (+74/+70)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,028,165	T→C	6.6%	intergenic (+75/+69)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,032,227	A→T	5.9%	F212Y (TTC→TAC) ‡	PP_5277 ←	MFS transporter
RA	6,032,228	A→T	6.0%	F212I (TTC→ATC) ‡	PP_5277 ←	MFS transporter
RA	6,037,790	C→T	10.7%	intergenic (+49/+87)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,793	Δ1 bp	9.1%	intergenic (+52/+84)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,794	C→A	9.6%	intergenic (+53/+83)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,798	G→C	10.0%	intergenic (+57/+79)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,800:1	+G	9.4%	intergenic (+59/+77)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,802	T→C	9.7%	intergenic (+61/+75)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,805	A→G	10.2%	intergenic (+64/+72)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,046,132	T→A	5.4%	Q17H (CAA→CAT)	PP_5293 ←	hypothetical protein
RA	6,046,138	G→A	6.0%	I15I (ATC→ATT) ‡	PP_5293 ←	hypothetical protein
RA	6,046,140	T→A	6.2%	I15F (ATC→TTC) ‡	PP_5293 ←	hypothetical protein
RA	6,046,142	T→C	6.0%	E14G (GAA→GGA)	PP_5293 ←	hypothetical protein
RA	6,046,148	T→A	5.5%	N12I (AAT→ATT)	PP_5293 ←	hypothetical protein
RA	6,049,245	A→G	6.1%	S350S (AGT→AGC)	PP_5297 ←	amino acid transporter
RA	6,049,254	C→T	5.4%	V347V (GTG→GTA)	PP_5297 ←	amino acid transporter
RA	6,053,303	C→G	5.1%	T258R (ACG→AGG)	PP_5300 →	LysR family transcriptional regulator
RA	6,055,771	T→A	16.6%	L543Q (CTG→CAG)	spoT →	bifunctional (p)ppGpp synthase/hydrolase
RA	6,055,789	A→G	7.3%	E549G (GAA→GGA)	spoT →	bifunctional (p)ppGpp synthase/hydrolase
RA	6,056,673	C→A	5.4%	intergenic (+17/‑40)	ridA → / → PP_5304	aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein
RA	6,056,674	C→G	5.8%	intergenic (+18/‑39)	ridA → / → PP_5304	aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein
RA	6,056,675	T→G	6.1%	intergenic (+19/‑38)	ridA → / → PP_5304	aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein
RA	6,077,909	G→A	5.8%	P451L (CCG→CTG)	PP_5327 ←	phosphate ABC transporter permease
RA	6,077,911	G→C	5.8%	S450R (AGC→AGG) ‡	PP_5327 ←	phosphate ABC transporter permease
RA	6,077,913	T→C	5.8%	S450G (AGC→GGC) ‡	PP_5327 ←	phosphate ABC transporter permease
RA	6,085,993	T→A	17.2%	intergenic (+35/+27)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,085,994	T→A	17.0%	intergenic (+36/+26)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,113,340	G→C	6.3%	W23C (TGG→TGC)	PP_5358 →	hypothetical protein
RA	6,116,982	T→A	5.7%	H118Q (CAT→CAA)	PP_5362 →	hypothetical protein
RA	6,131,950	C→T	5.9%	intergenic (+36/+31)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,131,951	A→G	5.6%	intergenic (+37/+30)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,131,952	T→A	6.7%	intergenic (+38/+29)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,131,953	C→T	5.6%	intergenic (+39/+28)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,131,954	A→G	5.6%	intergenic (+40/+27)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,134,175	C→T	7.6%	intergenic (+32/+35)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,134,178	A→T	8.2%	intergenic (+35/+32)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,134,181	A→G	8.2%	intergenic (+38/+29)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,134,191	G→T	5.8%	intergenic (+48/+19)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,147,212	A→T	5.1%	E648V (GAA→GTA)	cusA →	CzcA family RND family copper transporter
RA	6,163,986	C→T	6.6%	intergenic (+318/+550)	PP_5739 → / ← PP_5402	hypothetical protein/NAD‑dependent acetyl‑CoA synthetase deacetylase subunit
RA	6,163,988	C→G	6.7%	intergenic (+320/+548)	PP_5739 → / ← PP_5402	hypothetical protein/NAD‑dependent acetyl‑CoA synthetase deacetylase subunit
RA	6,163,989	T→A	6.8%	intergenic (+321/+547)	PP_5739 → / ← PP_5402	hypothetical protein/NAD‑dependent acetyl‑CoA synthetase deacetylase subunit
RA	6,163,990	C→G	6.7%	intergenic (+322/+546)	PP_5739 → / ← PP_5402	hypothetical protein/NAD‑dependent acetyl‑CoA synthetase deacetylase subunit
RA	6,163,992	A→G	6.6%	intergenic (+324/+544)	PP_5739 → / ← PP_5402	hypothetical protein/NAD‑dependent acetyl‑CoA synthetase deacetylase subunit
RA	6,172,907	C→G	5.2%	P328A (CCA→GCA) ‡	PP_5407 →	TnsD‑like transposition protein
RA	6,172,909	A→T	5.2%	P328P (CCA→CCT) ‡	PP_5407 →	TnsD‑like transposition protein
RA	6,172,911	C→G	5.2%	A329G (GCG→GGG)	PP_5407 →	TnsD‑like transposition protein

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	86750 =	182 (0.620)	26 (0.100)	17/242	NT	15.5%	intergenic (‑33/+112)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
	?	NC_002947	86841 =	122 (0.470)					intergenic (‑124/+21)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
*	?	NC_002947	100443 =	311 (1.060)	14 (0.050)	7/240	NT	5.4%	intergenic (‑35/+87)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
	?	NC_002947	100525 =	215 (0.840)					intergenic (‑117/+5)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
*	?	NC_002947	= 171971	NA (NA)	6 (0.020)	5/260	NT	NA	noncoding (583/1522 nt)	PP_16SA	16S ribosomal RNA
	?	NC_002947	= 172000	NA (NA)					noncoding (612/1522 nt)	PP_16SA	16S ribosomal RNA
*	?	NC_002947	= 174906	NA (NA)	11 (0.040)	9/264	NT	NA	noncoding (1704/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174936	NA (NA)					noncoding (1734/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	175871 =	NA (NA)	9 (0.030)	6/270	NT	NA	noncoding (2669/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	175901 =	NA (NA)					noncoding (2699/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	235331 =	231 (0.790)	32 (0.120)	19/242	NT	15.2%	intergenic (+28/+97)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	235390 =	152 (0.590)					intergenic (+87/+38)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
*	?	NC_002947	278500 =	217 (0.740)	11 (0.040)	7/262	NT	5.1%	coding (6/1242 nt)	PP_0224	DszC family monooxygenase
	?	NC_002947	278537 =	200 (0.710)					intergenic (‑32/+283)	PP_0224/sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
*	?	NC_002947	295670 =	266 (0.910)	29 (0.100)	17/262	NT	10.8%	intergenic (+17/+125)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
	?	NC_002947	295789 =	223 (0.800)					intergenic (+136/+6)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
*	?	NC_002947	= 312731	211 (0.720)	12 (0.050)	11/246	NT	5.7%	coding (483/831 nt)	fdhD	protein sulfur transferase
	?	NC_002947	= 312759	207 (0.790)					coding (455/831 nt)	fdhD	protein sulfur transferase
*	?	NC_002947	= 336235	86 (0.290)	21 (0.090)	13/220	NT	18.0%	intergenic (+80/+313)	PP_0278/PP_0279	hypothetical protein/hypothetical protein
	?	NC_002947	= 336301	122 (0.520)					intergenic (+146/+247)	PP_0278/PP_0279	hypothetical protein/hypothetical protein
*	?	NC_002947	= 380858	122 (0.420)	29 (0.120)	10/228	NT	22.3%	intergenic (+45/+64)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
	?	NC_002947	= 380892	101 (0.410)					intergenic (+79/+30)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
*	?	NC_002947	403254 =	233 (0.800)	12 (0.050)	6/244	NT	7.5%	intergenic (‑54/+115)	msrA/PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
	?	NC_002947	= 5167577	88 (0.340)					intergenic (+103/+98)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
*	?	NC_002947	478264 =	99 (0.340)	28 (0.120)	10/214	NT	26.8%	intergenic (+9/+101)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	478359 =	76 (0.330)					intergenic (+104/+6)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
*	?	NC_002947	= 478293	104 (0.360)	11 (0.050)	5/214	NT	12.3%	intergenic (+38/+72)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	= 478328	76 (0.330)					intergenic (+73/+37)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
*	?	NC_002947	486415 =	105 (0.360)	13 (0.050)	8/242	NT	9.2%	intergenic (‑98/+100)	apaG/rsmA	Co(2+)/Mg(2+) efflux protein/ribosomal RNA small subunit methyltransferase A
	?	NC_002947	486504 =	164 (0.630)					intergenic (‑187/+11)	apaG/rsmA	Co(2+)/Mg(2+) efflux protein/ribosomal RNA small subunit methyltransferase A
*	?	NC_002947	499197 =	157 (0.540)	13 (0.050)	9/226	NT	9.8%	intergenic (+38/‑258)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
	?	NC_002947	499284 =	110 (0.460)					intergenic (+125/‑171)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
*	?	NC_002947	507013 =	285 (0.970)	15 (0.060)	8/246	NT	5.7%	intergenic (+22/+111)	trpE/estP	anthranilate synthase component 1/esterase EstP
	?	NC_002947	507103 =	242 (0.920)					intergenic (+112/+21)	trpE/estP	anthranilate synthase component 1/esterase EstP
*	?	NC_002947	594774 =	217 (0.740)	17 (0.060)	10/252	NT	8.4%	intergenic (‑10/+117)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease
	?	NC_002947	594859 =	173 (0.640)					intergenic (‑95/+32)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease
*	?	NC_002947	= 742614	NA (NA)	8 (0.030)	4/264	NT	NA	coding (712/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	= 1431801	NA (NA)					coding (743/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	= 742907	NA (NA)	6 (0.020)	4/260	NT	NA	coding (1005/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	= 742957	NA (NA)					coding (1055/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	742918 =	NA (NA)	30 (0.110)	15/262	NT	NA	coding (1016/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	742948 =	NA (NA)					coding (1046/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	= 746421	NA (NA)	13 (0.050)	6/264	NT	NA	coding (81/1533 nt)	PP_0637	transposase
	?	NC_002947	= 746467	NA (NA)					coding (35/1533 nt)	PP_0637	transposase
*	?	NC_002947	= 786605	264 (0.900)	16 (0.060)	13/252	NT	6.2%	intergenic (+24/‑281)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
	?	NC_002947	= 786691	245 (0.910)					intergenic (+110/‑195)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
*	?	NC_002947	796828 =	253 (0.860)	15 (0.060)	9/242	NT	6.6%	intergenic (+27/‑163)	PP_0681/PP_0682	hypothetical protein/inner membrane protein
	?	NC_002947	796898 =	201 (0.780)					intergenic (+97/‑93)	PP_0681/PP_0682	hypothetical protein/inner membrane protein
*	?	NC_002947	= 835064	279 (0.950)	15 (0.050)	8/266	NT	5.5%	coding (1018/1713 nt)	PP_0718	sulfate transporter
	?	NC_002947	= 835114	242 (0.850)					coding (968/1713 nt)	PP_0718	sulfate transporter
*	?	NC_002947	850934 =	180 (0.610)	20 (0.070)	14/264	NT	9.1%	intergenic (‑514/‑291)	pcs/hemA	phosphatidylcholine synthase/glutamyl‑tRNA reductase
	?	NC_002947	851020 =	225 (0.800)					intergenic (‑600/‑205)	pcs/hemA	phosphatidylcholine synthase/glutamyl‑tRNA reductase
*	?	NC_002947	867938 =	217 (0.740)	35 (0.130)	17/244	NT	16.8%	intergenic (+33/+144)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	867998 =	154 (0.590)					intergenic (+93/+84)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
*	?	NC_002947	917692 =	323 (1.100)	16 (0.060)	8/252	NT	5.3%	intergenic (‑123/+76)	PP_0798/opdC	GGDEF domain‑containing protein/histidine‑specific outer membrane porin D
	?	NC_002947	917754 =	272 (1.010)					intergenic (‑185/+14)	PP_0798/opdC	GGDEF domain‑containing protein/histidine‑specific outer membrane porin D
*	?	NC_002947	1016348 =	264 (0.900)	17 (0.060)	9/254	NT	6.0%	intergenic (‑575/‑193)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3
	?	NC_002947	1016454 =	290 (1.070)					intergenic (‑681/‑87)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3
*	?	NC_002947	1030219 =	262 (0.890)	26 (0.110)	10/220	NT	14.1%	intergenic (‑121/+108)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1030312 =	107 (0.450)					intergenic (‑214/+15)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	1119824 =	164 (0.560)	34 (0.140)	13/224	NT	23.0%	intergenic (‑64/+115)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	1119900 =	93 (0.390)					intergenic (‑140/+39)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
*	?	NC_002947	1143486 =	260 (0.890)	21 (0.080)	9/246	NT	8.5%	intergenic (‑62/+103)	arcC/arcB	carbamate kinase/ornithine carbamoyltransferase
	?	NC_002947	1143575 =	216 (0.820)					intergenic (‑151/+14)	arcC/arcB	carbamate kinase/ornithine carbamoyltransferase
*	?	NC_002947	= 1161301	102 (0.350)	28 (0.120)	14/224	NT	22.4%	intergenic (+49/‑167)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
	?	NC_002947	= 1161324	111 (0.460)					intergenic (+72/‑144)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
*	?	NC_002947	1175699 =	208 (0.710)	23 (0.090)	11/252	NT	10.6%	intergenic (‑335/+98)	leuA/PP_1026	2‑isopropylmalate synthase/M23/M37 family peptidase
	?	NC_002947	1175783 =	195 (0.720)					intergenic (‑419/+14)	leuA/PP_1026	2‑isopropylmalate synthase/M23/M37 family peptidase
*	?	NC_002947	= 1278219	268 (0.910)	24 (0.090)	14/244	NT	9.1%	intergenic (+55/+113)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	= 1278278	243 (0.930)					intergenic (+114/+54)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
*	?	NC_002947	1285878 =	5 (0.020)	267 (0.920)	134/270	NT	98.2%	coding (322/573 nt)	PP_5742	membrane protein
	?	NC_002947	= 1303482	NA (NA)					intergenic (+386/+43)	PP_1133/PP_1134	transposase/hypothetical protein
*	?	NC_002947	= 1285879	5 (0.020)	280 (0.980)	138/268	NT	98.3%	coding (323/573 nt)	PP_5742	membrane protein
	?	NC_002947	2930421 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	1301739 =	NA (NA)	21 (0.080)	5/260	NT	NA	intergenic (‑537/‑29)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1301777 =	NA (NA)					coding (10/1329 nt)	PP_1133	transposase
*	?	NC_002947	1424502 =	162 (0.550)	30 (0.130)	12/210	NT	25.0%	intergenic (‑36/+101)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1424596 =	56 (0.250)					intergenic (‑130/+7)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	1424502 =	162 (0.550)	14 (0.050)	4/244	NT	6.8%	intergenic (‑36/+101)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 5243643	239 (0.920)					coding (158/204 nt)	PP_5701	hypothetical protein
*	?	NC_002947	= 1431770	NA (NA)	30 (0.110)	10/264	NT	NA	coding (712/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1431801	NA (NA)					coding (743/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	= 1491991	125 (0.430)	23 (0.100)	13/214	NT	17.1%	intergenic (+51/+79)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	= 1492021	126 (0.550)					intergenic (+81/+49)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	1504392 =	79 (0.270)	30 (0.120)	11/228	NT	30.2%	intergenic (+13/‑153)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	1504475 =	73 (0.300)					intergenic (+96/‑70)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	= 1504414	80 (0.270)	9 (0.040)	6/228	NT	11.4%	intergenic (+35/‑131)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 1504451	73 (0.300)					intergenic (+72/‑94)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	1736154 =	81 (0.280)	26 (0.110)	13/218	NT	24.9%	intergenic (‑76/+115)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	1736246 =	92 (0.390)					intergenic (‑168/+23)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	= 1736181	70 (0.240)	12 (0.050)	10/218	NT	14.0%	intergenic (‑103/+88)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1736217	92 (0.390)					intergenic (‑139/+52)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	= 1804864	162 (0.550)	25 (0.100)	14/228	NT	14.6%	intergenic (+43/‑144)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
	?	NC_002947	= 1804906	158 (0.650)					intergenic (+85/‑102)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
*	?	NC_002947	= 1825976	0 (0.000)	9 (0.030)	5/264	NT	100%	coding (748/1422 nt)	PP_1624	group II intron‑encoding maturase
	?	NC_002947	= 2075325	NA (NA)					coding (707/1422 nt)	PP_1846	group II intron‑encoding maturase
*	?	NC_002947	1849125 =	223 (0.760)	70 (0.250)	54/264	NT	19.9%	coding (660/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 2184368	347 (1.230)					intergenic (+175/+93)	PP_1931/PP_5486	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1849128	227 (0.770)	67 (0.240)	50/266	NT	20.9%	coding (657/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	2182694 =	288 (1.010)					intergenic (+103/‑63)	PP_5485/PP_1931	GNAT family acetyltransferase/hypothetical protein
*	?	NC_002947	1904198 =	182 (0.620)	38 (0.140)	11/254	NT	16.7%	intergenic (+277/‑243)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1904280 =	211 (0.780)					intergenic (+359/‑161)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	= 1904223	191 (0.650)	13 (0.050)	10/244	NT	6.3%	intergenic (+302/‑218)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	= 1904253	214 (0.820)					intergenic (+332/‑188)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	1911673 =	177 (0.600)	16 (0.070)	9/222	NT	10.9%	intergenic (+22/+106)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	1911767 =	119 (0.500)					intergenic (+116/+12)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
*	?	NC_002947	1972137 =	127 (0.430)	35 (0.160)	15/208	NT	29.6%	intergenic (+15/+104)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	1972233 =	70 (0.310)					intergenic (+111/+8)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	1973023 =	263 (0.900)	16 (0.060)	8/248	NT	6.2%	intergenic (‑42/+116)	yciK/gph	putative oxidoreductase/phosphoglycolate phosphatase
	?	NC_002947	1973108 =	244 (0.920)					intergenic (‑127/+31)	yciK/gph	putative oxidoreductase/phosphoglycolate phosphatase
*	?	NC_002947	1975712 =	174 (0.590)	31 (0.120)	16/234	NT	16.3%	intergenic (+14/‑252)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
	?	NC_002947	1975814 =	170 (0.680)					intergenic (+116/‑150)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
*	?	NC_002947	= 1975731	174 (0.590)	35 (0.140)	17/234	NT	18.0%	intergenic (+33/‑233)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
	?	NC_002947	= 1975793	170 (0.680)					intergenic (+95/‑171)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
*	?	NC_002947	2053786 =	225 (0.770)	21 (0.080)	8/240	NT	11.3%	intergenic (+33/+106)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	2053877 =	134 (0.520)					intergenic (+124/+15)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
*	?	NC_002947	= 2055587	98 (0.330)	39 (0.180)	15/200	NT	31.1%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2055623	101 (0.470)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
*	?	NC_002947	= 2060970	166 (0.570)	16 (0.060)	12/242	NT	9.5%	intergenic (+27/‑116)	aroC/PP_1831	chorismate synthase/membrane protein
	?	NC_002947	= 2061044	158 (0.610)					intergenic (+101/‑42)	aroC/PP_1831	chorismate synthase/membrane protein
*	?	NC_002947	2062792 =	107 (0.370)	13 (0.050)	9/226	NT	10.6%	intergenic (+16/+112)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	2062880 =	132 (0.550)					intergenic (+104/+24)	PP_1832/PP_1833	oxidase/hypothetical protein
*	?	NC_002947	= 2062815	106 (0.360)	22 (0.090)	10/226	NT	16.7%	intergenic (+39/+89)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	= 2062855	132 (0.550)					intergenic (+79/+49)	PP_1832/PP_1833	oxidase/hypothetical protein
*	?	NC_002947	2091235 =	NA (NA)	12 (0.040)	8/258	NT	NA	coding (358/1302 nt)	PP_1865	transposase
	?	NC_002947	2091297 =	NA (NA)					coding (420/1302 nt)	PP_1865	transposase
*	?	NC_002947	= 2091242	NA (NA)	19 (0.070)	11/258	NT	NA	coding (365/1302 nt)	PP_1865	transposase
	?	NC_002947	= 2091288	NA (NA)					coding (411/1302 nt)	PP_1865	transposase
*	?	NC_002947	= 2092673	211 (0.720)	31 (0.110)	9/258	NT	13.6%	intergenic (+494/+424)	PP_1865/aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
	?	NC_002947	= 2261246	196 (0.710)					intergenic (+314/‑390)	asd/PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
*	?	NC_002947	2104952 =	79 (0.270)	22 (0.090)	10/228	NT	22.4%	intergenic (‑71/‑134)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	2105047 =	87 (0.360)					intergenic (‑166/‑39)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	= 2104974	77 (0.260)	22 (0.090)	12/228	NT	22.6%	intergenic (‑93/‑112)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	= 2105023	87 (0.360)					intergenic (‑142/‑63)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	2238056 =	266 (0.910)	18 (0.080)	6/224	NT	10.9%	intergenic (+24/+207)	PP_1971/PP_t63	hypothetical protein/tRNA‑Asn
	?	NC_002947	= 2477107	77 (0.320)					intergenic (+19/+130)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
*	?	NC_002947	2241911 =	142 (0.480)	22 (0.090)	12/242	NT	14.8%	intergenic (+14/+114)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
	?	NC_002947	2242002 =	128 (0.490)					intergenic (+105/+23)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
*	?	NC_002947	= 2241926	139 (0.470)	20 (0.080)	10/242	NT	13.8%	intergenic (+29/+99)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
	?	NC_002947	= 2241985	128 (0.490)					intergenic (+88/+40)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
*	?	NC_002947	= 2261669	0 (0.000)	20 (0.070)	13/268	NT	100%	coding (34/1302 nt)	PP_1990	transposase
	?	NC_002947	= 2418143	NA (NA)					intergenic (+415/‑6)	rlmM/PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
*	?	NC_002947	= 2263064	NA (NA)	15 (0.050)	5/266	NT	NA	intergenic (+127/‑265)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
	?	NC_002947	= 2263108	NA (NA)					intergenic (+171/‑221)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
*	?	NC_002947	2300767 =	197 (0.670)	22 (0.090)	10/226	NT	13.9%	intergenic (+21/+112)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	2300852 =	111 (0.460)					intergenic (+106/+27)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
*	?	NC_002947	2306488 =	240 (0.820)	21 (0.080)	12/246	NT	9.0%	intergenic (‑140/‑191)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2306573 =	208 (0.790)					intergenic (‑225/‑106)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
*	?	NC_002947	= 2308110	243 (0.830)	14 (0.050)	8/254	NT	5.7%	intergenic (‑203/+92)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
	?	NC_002947	= 2308170	235 (0.870)					intergenic (‑263/+32)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
*	?	NC_002947	2417935 =	211 (0.720)	33 (0.120) +AGGG	7/266	NT	12.8%	intergenic (+207/‑214)	rlmM/PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
	?	NC_002947	4027275 =	252 (0.860)					coding (24/942 nt)	PP_3547	NAD(P)‑binding oxidoreductase
*	?	NC_002947	2419814 =	237 (0.810)	26 (0.090)	14/270	NT	10.0%	coding (20/198 nt)	PP_2115	hypothetical protein
	?	NC_002947	= 4913076	NA (NA)					intergenic (‑58/‑224)	PP_4317/PP_4318	hypothetical protein/transposase
*	?	NC_002947	3324126 =	195 (0.670)	17 (0.070)	10/244	NT	9.6%	intergenic (‑98/+94)	treSA/PP_2919	trehalose synthase A/LysR family transcriptional regulator
	?	NC_002947	3324185 =	146 (0.560)					intergenic (‑157/+35)	treSA/PP_2919	trehalose synthase A/LysR family transcriptional regulator
*	?	NC_002947	3344109 =	211 (0.720)	10 (0.040)	6/230	NT	6.1%	intergenic (‑119/+124)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
	?	NC_002947	3344197 =	131 (0.530)					intergenic (‑207/+36)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
*	?	NC_002947	3527694 =	200 (0.680)	29 (0.130) +36 bp	9/202	NT	13.4%	intergenic (+489/‑208)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	= 4500696	309 (1.050)					coding (13/960 nt)	PP_3987	site‑specific recombinase
*	?	NC_002947	3582417 =	232 (0.790)	11 (0.040)	8/246	NT	5.0%	intergenic (+19/‑161)	PP_3157/PP_3158	inositol monophosphatase family protein/hypothetical protein
	?	NC_002947	3582472 =	209 (0.790)					intergenic (+74/‑106)	PP_3157/PP_3158	inositol monophosphatase family protein/hypothetical protein
*	?	NC_002947	= 3593108	131 (0.450)	21 (0.080)	13/234	NT	14.7%	intergenic (+37/‑38)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
	?	NC_002947	= 3593136	131 (0.520)					intergenic (+65/‑10)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
*	?	NC_002947	3952906 =	101 (0.340)	18 (0.080)	12/218	NT	16.7%	coding (136/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3952991 =	99 (0.420)					coding (51/1797 nt)	PP_3483	type II secretion system protein
*	?	NC_002947	= 3952933	110 (0.380)	19 (0.080)	10/218	NT	16.9%	coding (109/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	= 3952962	99 (0.420)					coding (80/1797 nt)	PP_3483	type II secretion system protein
*	?	NC_002947	= 3956090	103 (0.350)	12 (0.050)	5/218	NT	10.5%	intergenic (‑61/+134)	PP_3486/PP_3487	cytochrome c/hypothetical protein
	?	NC_002947	= 3956150	122 (0.520)					intergenic (‑121/+74)	PP_3486/PP_3487	cytochrome c/hypothetical protein
*	?	NC_002947	= 4044380	280 (0.960)	17 (0.060)	12/268	NT	5.7%	coding (244/864 nt)	PP_3560	LysR family transcriptional regulator
	?	NC_002947	= 4044417	290 (1.010)					coding (281/864 nt)	PP_3560	LysR family transcriptional regulator
*	?	NC_002947	4084407 =	195 (0.670)	9 (0.040)	7/226	NT	5.8%	intergenic (‑218/+166)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase
	?	NC_002947	4084524 =	130 (0.540)					intergenic (‑335/+49)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase
*	?	NC_002947	4099631 =	305 (1.040)	21 (0.080)	15/250	NT	7.3%	intergenic (+54/+81)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator
	?	NC_002947	4099700 =	254 (0.950)					intergenic (+123/+12)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator
*	?	NC_002947	= 4136103	286 (0.980)	26 (0.100)	15/254	NT	8.9%	intergenic (+22/+90)	PP_3634/PP_3635	GNAT family acetyltransferase/sulfonate ABC transporter permease
	?	NC_002947	= 4136165	265 (0.980)					intergenic (+84/+28)	PP_3634/PP_3635	GNAT family acetyltransferase/sulfonate ABC transporter permease
*	?	NC_002947	4155017 =	159 (0.540)	15 (0.060)	11/238	NT	11.7%	intergenic (+23/‑374)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
	?	NC_002947	4155084 =	88 (0.350)					intergenic (+90/‑307)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
*	?	NC_002947	4164062 =	112 (0.380)	39 (0.150)	18/248	NT	23.8%	intergenic (+17/‑192)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	4164150 =	149 (0.560)					intergenic (+105/‑104)	PP_3661/PP_3662	membrane protein/hypothetical protein
*	?	NC_002947	= 4164091	138 (0.470)	31 (0.120)	15/242	NT	19.4%	intergenic (+46/‑163)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	= 4164119	136 (0.530)					intergenic (+74/‑135)	PP_3661/PP_3662	membrane protein/hypothetical protein
*	?	NC_002947	= 4271522	270 (0.920)	14 (0.050)	11/260	NT	5.1%	intergenic (‑71/+75)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
	?	NC_002947	= 4271595	262 (0.940)					intergenic (‑144/+2)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
*	?	NC_002947	4447550 =	276 (0.940)	13 (0.050)	10/258	NT	5.1%	intergenic (‑27/+111)	nicP‑II/nicT	porin‑like protein/metabolite transport protein NicT
	?	NC_002947	4447596 =	227 (0.820)					intergenic (‑73/+65)	nicP‑II/nicT	porin‑like protein/metabolite transport protein NicT
*	?	NC_002947	4538561 =	143 (0.490)	7 (0.030)	5/250	NT	5.0%	intergenic (+10/‑164)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
	?	NC_002947	4538650 =	134 (0.500)					intergenic (+99/‑75)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
*	?	NC_002947	= 4538585	126 (0.430)	19 (0.070)	14/250	NT	13.8%	intergenic (+34/‑140)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
	?	NC_002947	= 4538624	123 (0.460)					intergenic (+73/‑101)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
*	?	NC_002947	4556934 =	116 (0.400)	13 (0.060)	8/208	NT	16.3%	intergenic (+35/+146)	pydA/rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
	?	NC_002947	4557051 =	45 (0.200)					intergenic (+152/+29)	pydA/rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
*	?	NC_002947	4582810 =	263 (0.900)	26 (0.090)	17/264	NT	9.8%	intergenic (+26/+83)	PP_4057/glgB	membrane protein/1,4‑alpha‑glucan branching enzyme
	?	NC_002947	4582862 =	226 (0.800)					intergenic (+78/+31)	PP_4057/glgB	membrane protein/1,4‑alpha‑glucan branching enzyme
*	?	NC_002947	4588468 =	150 (0.510)	11 (0.040)	8/234	NT	8.8%	intergenic (‑48/+123)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	4588569 =	99 (0.400)					intergenic (‑149/+22)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
*	?	NC_002947	= 4588487	148 (0.510)	26 (0.100)	11/234	NT	18.7%	intergenic (‑67/+104)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	= 4588548	99 (0.400)					intergenic (‑128/+43)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
*	?	NC_002947	4591012 =	125 (0.430)	26 (0.120)	13/198	NT	30.4%	intergenic (+102/+115)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4591116 =	29 (0.140)					intergenic (+206/+11)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	4652552 =	40 (0.140)	53 (0.250)	17/196	NT	56.8%	intergenic (+10/+121)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	4652660 =	52 (0.250)					intergenic (+118/+13)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	= 4652590	38 (0.130)	26 (0.120)	13/196	NT	39.6%	intergenic (+48/+83)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	= 4652620	52 (0.250)					intergenic (+78/+53)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	4813168 =	1 (0.000)	132 (0.610)	46/204	NT	62.4%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5993940	158 (0.720)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4813173	0 (0.000)	144 (0.540)	47/250	NT	59.8%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5993770 =	194 (0.730)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4850137	145 (0.490)	30 (0.120)	13/242	NT	17.4%	intergenic (+29/‑108)	PP_4260/PP_4261	hypothetical protein/cation‑transporting P‑type ATPase
	?	NC_002947	= 4850198	157 (0.610)					intergenic (+90/‑47)	PP_4260/PP_4261	hypothetical protein/cation‑transporting P‑type ATPase
*	?	NC_002947	4891130 =	161 (0.550)	12 (0.050)	9/216	NT	11.9%	intergenic (+15/+108)	PP_4295/PP_4296	TetR family transcriptional regulator/hypothetical protein
	?	NC_002947	4891217 =	51 (0.220)					intergenic (+102/+21)	PP_4295/PP_4296	TetR family transcriptional regulator/hypothetical protein
*	?	NC_002947	4898547 =	100 (0.340)	7 (0.030)	6/220	NT	8.0%	intergenic (+28/‑180)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	4898626 =	81 (0.340)					intergenic (+107/‑101)	pyk/PP_4302	pyruvate kinase/urea transporter
*	?	NC_002947	= 4898573	100 (0.340)	8 (0.030)	5/220	NT	9.0%	intergenic (+54/‑154)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	= 4898598	81 (0.340)					intergenic (+79/‑129)	pyk/PP_4302	pyruvate kinase/urea transporter
*	?	NC_002947	4901372 =	94 (0.320)	32 (0.130)	19/232	NT	25.3%	intergenic (+11/‑197)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	4901461 =	109 (0.440)					intergenic (+100/‑108)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	= 4901392	96 (0.330)	48 (0.190)	16/232	NT	33.5%	intergenic (+31/‑177)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 4901439	109 (0.440)					intergenic (+78/‑130)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	4976864 =	276 (0.940)	15 (0.050)	8/260	NT	5.7%	intergenic (‑305/+112)	PP_4379/flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
	?	NC_002947	4976939 =	230 (0.830)					intergenic (‑380/+37)	PP_4379/flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
*	?	NC_002947	5117556 =	157 (0.540)	17 (0.070)	11/230	NT	10.4%	intergenic (‑148/+118)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
	?	NC_002947	5117661 =	162 (0.660)					intergenic (‑253/+13)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
*	?	NC_002947	= 5117577	155 (0.530)	12 (0.050)	6/230	NT	7.6%	intergenic (‑169/+97)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
	?	NC_002947	= 5117638	162 (0.660)					intergenic (‑230/+36)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
*	?	NC_002947	5130074 =	86 (0.290)	21 (0.080)	9/256	NT	15.0%	intergenic (+51/‑131)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	5130173 =	157 (0.570)					intergenic (+150/‑32)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
*	?	NC_002947	= 5130109	114 (0.390)	14 (0.060)	9/222	NT	11.3%	intergenic (+86/‑96)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	= 5130136	127 (0.540)					intergenic (+113/‑69)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
*	?	NC_002947	5167561 =	86 (0.290)	41 (0.150)	20/264	NT	26.9%	intergenic (+87/+114)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	5167657 =	140 (0.500)					intergenic (+183/+18)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
*	?	NC_002947	5206576 =	121 (0.410)	31 (0.140)	12/200	NT	36.0%	intergenic (‑65/‑115)	PP_4582/PP_4583	membrane protein/putative Peptidase
	?	NC_002947	5206671 =	22 (0.100)					intergenic (‑160/‑20)	PP_4582/PP_4583	membrane protein/putative Peptidase
*	?	NC_002947	5278997 =	209 (0.710)	15 (0.060)	10/248	NT	8.6%	intergenic (+22/+84)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
	?	NC_002947	5279070 =	130 (0.490)					intergenic (+95/+11)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
*	?	NC_002947	5293391 =	191 (0.650)	12 (0.050)	8/214	NT	9.3%	intergenic (‑75/+109)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	5293485 =	84 (0.370)					intergenic (‑169/+15)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	5387395 =	54 (0.180)	11 (0.050)	9/204	NT	21.3%	intergenic (+18/+115)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
	?	NC_002947	5387493 =	41 (0.190)					intergenic (+116/+17)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
*	?	NC_002947	= 5387429	45 (0.150)	26 (0.120)	9/204	NT	41.1%	intergenic (+52/+81)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
	?	NC_002947	= 5387457	41 (0.190)					intergenic (+80/+53)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
*	?	NC_002947	5394322 =	262 (0.890)	12 (0.050)	9/220	NT	6.1%	intergenic (+24/‑296)	dld2/PP_4738	D‑lactate dehydrogenase/hypothetical protein
	?	NC_002947	5394431 =	159 (0.680)					intergenic (+133/‑187)	dld2/PP_4738	D‑lactate dehydrogenase/hypothetical protein
*	?	NC_002947	= 5518264	153 (0.520)	30 (0.130)	13/222	NT	17.9%	intergenic (+45/‑109)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	= 5518320	152 (0.640)					intergenic (+101/‑53)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
*	?	NC_002947	5524822 =	194 (0.660)	21 (0.080)	17/254	NT	10.1%	intergenic (‑96/‑130)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	5524907 =	193 (0.710)					intergenic (‑181/‑45)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease
*	?	NC_002947	5599092 =	103 (0.350)	20 (0.090)	8/218	NT	18.1%	intergenic (‑39/+106)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	5599185 =	99 (0.420)					intergenic (‑132/+13)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	= 5599119	97 (0.330)	28 (0.120)	8/218	NT	24.1%	intergenic (‑66/+79)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	= 5599156	99 (0.420)					intergenic (‑103/+42)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	= 5676638	113 (0.390)	22 (0.090)	5/226	NT	17.1%	intergenic (+57/‑113)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	= 5676675	120 (0.500)					intergenic (+94/‑76)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
*	?	NC_002947	5686346 =	131 (0.450)	9 (0.040)	6/228	NT	9.2%	intergenic (‑63/+145)	PP_4986/PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
	?	NC_002947	5686461 =	69 (0.280)					intergenic (‑178/+30)	PP_4986/PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
*	?	NC_002947	= 5703748	134 (0.460)	32 (0.120)	12/240	NT	20.7%	intergenic (+33/‑134)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	= 5703797	128 (0.500)					intergenic (+82/‑85)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
*	?	NC_002947	5748341 =	224 (0.760)	29 (0.110)	16/248	NT	14.3%	intergenic (‑169/+78)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
	?	NC_002947	5748395 =	146 (0.550)					intergenic (‑223/+24)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
*	?	NC_002947	= 5759743	283 (0.970)	17 (0.060)	10/266	NT	5.8%	coding (934/1086 nt)	glnL	two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
	?	NC_002947	= 5759779	280 (0.980)					coding (970/1086 nt)	glnL	two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
*	?	NC_002947	5764409 =	79 (0.270)	21 (0.090)	6/210	NT	27.9%	intergenic (+13/+143)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	5764501 =	48 (0.210)					intergenic (+105/+51)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
*	?	NC_002947	= 5764440	72 (0.250)	33 (0.150)	10/210	NT	39.0%	intergenic (+44/+112)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	= 5764468	48 (0.210)					intergenic (+72/+84)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
*	?	NC_002947	5791477 =	150 (0.510)	8 (0.030)	6/226	NT	6.2%	intergenic (+15/‑116)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	5791562 =	120 (0.500)					intergenic (+100/‑31)	PP_5068/trxC	hypothetical protein/thioredoxin
*	?	NC_002947	= 5791500	132 (0.450)	16 (0.070)	6/226	NT	12.3%	intergenic (+38/‑93)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	= 5791537	120 (0.500)					intergenic (+75/‑56)	PP_5068/trxC	hypothetical protein/thioredoxin
*	?	NC_002947	= 5821876	107 (0.370)	34 (0.130)	12/238	NT	25.1%	intergenic (+57/+72)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	= 5821903	110 (0.430)					intergenic (+84/+45)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
*	?	NC_002947	= 5875294	114 (0.390)	13 (0.060)	9/216	NT	12.0%	intergenic (+50/+84)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	= 5875329	100 (0.430)					intergenic (+85/+49)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	5879553 =	290 (0.990)	15 (0.060)	9/252	NT	5.4%	intergenic (‑40/+108)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
	?	NC_002947	5879635 =	260 (0.970)					intergenic (‑122/+26)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
*	?	NC_002947	= 5879563	293 (1.000)	14 (0.050)	10/252	NT	5.0%	intergenic (‑50/+98)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
	?	NC_002947	= 5879623	260 (0.970)					intergenic (‑110/+38)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
*	?	NC_002947	5881989 =	237 (0.810)	10 (0.040)	8/226	NT	6.0%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5882071 =	120 (0.500)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
*	?	NC_002947	5908776 =	232 (0.790)	34 (0.130)	17/242	NT	14.9%	intergenic (+27/+80)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	5908836 =	183 (0.710)					intergenic (+87/+20)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
*	?	NC_002947	5919162 =	86 (0.290)	30 (0.130)	15/218	NT	30.2%	intergenic (+49/+104)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	5919258 =	70 (0.300)					intergenic (+145/+8)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5919189	75 (0.260)	22 (0.090)	12/218	NT	25.3%	intergenic (+76/+77)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	= 5919229	70 (0.300)					intergenic (+116/+37)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	6005908 =	78 (0.270)	13 (0.060)	6/214	NT	17.1%	intergenic (+10/+99)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	6006002 =	65 (0.280)					intergenic (+104/+5)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
*	?	NC_002947	= 6005937	72 (0.250)	12 (0.050)	9/214	NT	16.5%	intergenic (+39/+70)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	= 6005971	65 (0.280)					intergenic (+73/+36)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
*	?	NC_002947	= 6060157	212 (0.720)	20 (0.070)	8/258	NT	8.7%	coding (105/732 nt)	tonB	TonB energy transducing system subunit TonB
	?	NC_002947	= 6060197	220 (0.800)					coding (145/732 nt)	tonB	TonB energy transducing system subunit TonB
*	?	NC_002947	6092569 =	266 (0.910)	29 (0.110)	15/256	NT	11.8%	intergenic (+15/‑215)	oruR/aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase
	?	NC_002947	6092651 =	183 (0.670)					intergenic (+97/‑133)	oruR/aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase