Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
87 |
31.3 |
1776092 |
98.2% |
1744122 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,190,185 |
T→C |
L102P (CTT→CCT) |
yqiH → |
putative fimbrial chaperone YqiH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,190,185 | 0 | T | C | 100.0%
| 102.1
/ NA
| 28 | L102P (CTT→CCT) | yqiH | putative fimbrial chaperone YqiH |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (12/16); total (12/16) |
TTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATG > NC_000913/3190110‑3190261
|
ttCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAAcctcct > 1:578656/1‑80 (MQ=255)
cctccAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTaa < 1:578615/80‑1 (MQ=255)
tccAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGa > 2:578648/1‑81 (MQ=255)
ccAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGa > 2:578650/1‑80 (MQ=255)
cAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACa < 1:578616/81‑1 (MQ=255)
aaTGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGa > 1:578653/1‑78 (MQ=255)
aaTGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACag < 1:578617/81‑1 (MQ=255)
aaTGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACag < 1:578618/81‑1 (MQ=255)
aTGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACaga < 2:578619/81‑1 (MQ=255)
cGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAAc < 2:578620/80‑1 (MQ=255)
ttAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGctc > 2:578649/1‑81 (MQ=255)
aaTCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGCtctt < 1:578621/80‑1 (MQ=255)
aaTCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGCtctt < 2:578622/80‑1 (MQ=255)
aTCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGCtcttct < 2:578623/81‑1 (MQ=255)
aTCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGCtcttc > 1:578652/1‑80 (MQ=255)
ccAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGCTCTTCTAt < 1:578624/80‑1 (MQ=255)
cAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGCTCTTCTAttt < 2:578625/81‑1 (MQ=255)
gTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGCTCTTCTAtttt > 2:578661/1‑80 (MQ=255)
ttCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCgag < 1:578626/81‑1 (MQ=255)
aaTAAGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAAt < 1:578627/81‑1 (MQ=255)
aaGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATAcc > 1:578657/1‑81 (MQ=255)
aaGAATGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATAcc > 2:578654/1‑81 (MQ=255)
aTGATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGcc > 1:578659/1‑80 (MQ=255)
gATAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCa > 1:578658/1‑80 (MQ=255)
aTAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCaa > 2:578665/1‑80 (MQ=255)
tAACTCAGGAAAAAATTGCTCAACCTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCaaaa < 1:578628/81‑1 (MQ=255)
aaCCTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGAt < 1:578629/79‑1 (MQ=255)
aaCCTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATg < 2:578630/80‑1 (MQ=255)
aaCCTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATg > 2:578664/1‑80 (MQ=255)
|
TTCCTCCAATGGTGCGTTTAAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATG > NC_000913/3190110‑3190261
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
