mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 38,036 | G→T | F360L (TTC→TTA) | caiB ← | gamma‑butyrobetainyl‑CoA:carnitine CoA transferase |
| RA | 79,341 | C→A | G38V (GGT→GTT) | leuD ← | 3‑isopropylmalate dehydratase subunit LeuD |
| RA | 91,323 | G→A | E98K (GAA→AAA) | ftsL → | cell division protein FtsL |
| RA | 104,426 | C→T | L149F (CTT→TTT) | ftsA → | cell division protein FtsA |
| RA | 164,352 | C→T | L750L (CTG→TTG) | hrpB → | putative ATP‑dependent RNA helicase HrpB |
| RA | 191,485 | A→G | E210G (GAA→GGA) | tsf → | protein chain elongation factor EF‑Ts |
| RA | 208,192 | T→A | S1023T (TCC→ACC) | dnaE → | DNA polymerase III subunit alpha |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 268,409 | C→T | E184E (GAG→GAA) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein YkfA |
| RA | 304,754 | C→T | R151Q (CGA→CAA) | ecpE ← | putative fimbrial chaperone EcpE |
| RA | 311,801 | G→A | intergenic (‑465/‑311) | ecpR ← / → ykgL | DNA‑binding transcriptional dual regulator MatA/uncharacterized protein YkgL |
| RA | 314,734 | Δ1 bp | pseudogene (378/888 nt) | eaeH → | putative porin domain‑containing protein EaeH |
| RA | 334,105 | T→G | H110P (CAC→CCC) | yahB ← | putative LysR‑type DNA‑binding transcriptional regulator YahB |
| RA | 341,434 | C→G | P104A (CCG→GCG) | yahJ → | putative deaminase with metallo‑dependent hydrolase domain |
| RA | 399,509 | T→C | intergenic (‑176/‑84) | yaiY ← / → yaiZ | inner membrane protein/DUF2754 domain‑containing protein YaiZ |
| RA | 508,288 | A→G | D24G (GAT→GGT) | ybaQ → | putative DNA‑binding transcriptional regulator YbaQ |
| RA | 538,029 | A→G | I133V (ATT→GTT) | ybbW → | putative allantoin transporter |
| RA | 698,541 | G→T | R213S (CGT→AGT) | asnB ← | asparagine synthetase B |
| RA | 742,653 | G→A | intergenic (‑97/‑174) | dtpD ← / → ybgI | dipeptide:H(+) symporter DtpD/radiation resistance protein YbgI |
| RA | 797,736 | T→C | E232E (GAA→GAG) | ybhA ← | pyridoxal phosphate/fructose‑1,6‑bisphosphate phosphatase |
| RA | 913,852 | Δ1 bp | intergenic (‑38/+106) | hcp ← / ← lysO | protein S‑nitrosylase/L‑lysine exporter |
| RA | 914,159 | T→C | E233E (GAA→GAG) | lysO ← | L‑lysine exporter |
| RA | 919,229 | A→G | intergenic (‑109/‑6) | ybjX ← / → macA | DUF535 domain‑containing protein YbjX/ABC‑type tripartite efflux pump membrane fusion protein |
| RA | 922,079 | T→G | L578R (CTG→CGG) | macB → | ABC‑type tripartite efflux pump ATP binding/membrane subunit |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 1,064,853 | A→T | D273V (GAT→GTT) | yccE → | uncharacterized protein YccE |
| RA | 1,096,234 | C→G | P131R (CCG→CGG) | ycdU → | uncharacterized protein YcdU |
| RA | 1,104,203 | A→G | T85A (ACA→GCA) | csgB → | curlin, minor subunit |
| RA | 1,224,226 | (A)5→4 | intergenic (+319/+53) | ycgI → / ← minE | protein YcgI/Z‑ring positioning protein MinE |
| RA | 1,277,223 | G→C | A132A (GCC→GCG) | narX ← | sensory histidine kinase NarX |
| RA | 1,284,681 | T→C | S360P (TCT→CCT) | narH → | nitrate reductase A subunit beta |
| RA | 1,299,534 | T→C | F2L (TTT→CTT) | insH21 → | IS5 transposase and trans‑activator |
| RA | 1,428,030 | C→G | A233P (GCC→CCC) | insH‑5 ← | Rac prophage; IS5 transposase and trans‑activator |
| RA | 1,435,732 | (A)5→4 | intergenic (‑113/+28) | uspF ← / ← ompN | nucleotide binding filament protein/outer membrane porin N |
| RA | 1,490,954 | (T)5→4 | coding (53/531 nt) | cybB → | cytochrome b561 |
| RA | 1,497,760 | A→C | D302A (GAT→GCT) | opgD → | glucan biosynthesis protein D |
| RA | 1,512,246 | T→G | V198G (GTT→GGT) | ydcS → | putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase |
| RA | 1,520,982 | A→G | I695T (ATT→ACT) | yncD ← | putative TonB‑dependent outer membrane receptor |
| RA | 1,575,336 | T→G | S762R (AGC→CGC) | yddB ← | putative TonB‑dependent receptor |
| RA | 1,578,871 | A→G | F158L (TTC→CTC) | yddA ← | ABC transporter family protein YddA |
| RA | 1,607,828 | C→T | G161G (GGC→GGT) | tam → | trans‑aconitate 2‑methyltransferase |
| RA | 1,610,589 | A→G | V31A (GTT→GCT) | uxaB ← | tagaturonate reductase |
| RA | 1,658,706 | G→C | G213A (GGC→GCC) | ynfE → | putative selenate reductase YnfE |
| RA | 1,680,663 | C→T | P369P (CCC→CCT) | ydgI → | putative arginine:ornithine antiporter |
| RA | 1,706,464 | A→T | K39N (AAA→AAT) | rsxB → | SoxR [2Fe‑2S] reducing system protein RsxB |
| RA | 1,750,974 | T→A | T14S (ACA→TCA) | ydhX ← | putative 4Fe‑4S ferredoxin‑type protein |
| RA | 1,774,321 | T→C | V178A (GTC→GCC) | ydiB → | shikimate dehydrogenase/quinate dehydrogenase |
| RA | 1,796,866 | T→C | Y360C (TAT→TGT) | pheT ← | phenylalanine‑‑tRNA ligase subunit beta |
| RA | 1,799,179 | Δ1 bp | intergenic (‑237/+47) | pheS ← / ← pheM | phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide |
| RA | 1,830,943 | T→C | Y347C (TAC→TGC) | astC ← | succinylornithine transaminase |
| RA | 1,832,618 | G→C | G64A (GGC→GCC) | xthA → | exodeoxyribonuclease III |
| RA | 1,915,177 | (T)6→5 | coding (358/699 nt) | proQ ← | RNA chaperone ProQ |
| RA | 1,928,777 | A→G | D21D (GAT→GAC) | ptrB ← | oligopeptidase B |
| RA | 1,995,681 | T→C | Y9Y (TAT→TAC) | yecU → | protein YecU |
| RA | 1,995,748 | C→G | L32V (CTT→GTT) | yecU → | protein YecU |
| RA | 2,015,409 | A→G | E177G (GAA→GGA) | fliG → | flagellar motor switch protein FliG |
| RA | 2,044,771 | Δ1 bp | intergenic (+147/‑167) | asnT → / → yeeJ | tRNA‑Asn/inverse autotransporter adhesin |
| RA | 2,113,482 | T→C | K282K (AAA→AAG) | galF ← | UTP:glucose‑1‑phosphate uridylyltransferase, low activity |
| RA | 2,150,632 | Δ1 bp | coding (354/1947 nt) | yegI ← | protein kinase YegI |
| RA | 2,221,701 | T→C | M97V (ATG→GTG) | bglX ← | beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,259,134 | T→A | N55Y (AAC→TAC) | psuK ← | putative pseudouridine kinase |
| RA | 2,260,779 | T→C | K211R (AAA→AGA) | fruA ← | fructose‑specific PTS multiphosphoryl transfer protein FruA |
| RA | 2,451,016 | A→G | D20D (GAT→GAC) | yfcQ ← | putative fimbrial protein YfcQ |
| RA | 2,517,367 | (A)5→4 | coding (466/2190 nt) | pdeA ← | putative c‑di‑GMP phosphodiesterase PdeA |
| RA | 2,693,373 | G→C | A724G (GCC→GGC) | purL ← | phosphoribosylformylglycinamide synthetase |
| RA | 2,717,817 | C→T | A238T (GCG→ACG) | yfiF ← | putative methyltransferase |
| JC JC | 2,737,118 | IS1 (+) +8 bp | intergenic (+235/‑29) | bamD → / → raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor |
| RA | 2,887,571 | Δ1 bp | intergenic (+163/+7) | sokX → / ← cysH | small RNA SokX/phosphoadenosine phosphosulfate reductase |
| RA | 2,889,110 | T→C | K330K (AAA→AAG) | cysI ← | sulfite reductase, hemoprotein subunit |
| RA | 3,189,625 | C→A | pseudogene (2194/2434 nt) | yqiG → | putative outer membrane usher protein YqiG |
| RA | 3,190,185 | T→C | L102P (CTT→CCT) | yqiH → | putative fimbrial chaperone YqiH |
| RA | 3,243,047 | A→T | Y90N (TAT→AAT) | uxaA ← | D‑altronate dehydratase |
| RA | 3,362,820 | C→T | T5M (ACG→ATG) | yhcD → | putative fimbrial usher protein YhcD |
| RA | 3,651,128 | (T)7→8 | intergenic (+466/‑163) | arsC → / → yhiS | arsenate reductase/putative uncharacterized protein YhiS |
| RA | 3,667,617 | (A)6→5 | intergenic (‑37/+174) | gadA ← / ← ccp | glutamate decarboxylase A/cytochrome c peroxidase |
| RA | 3,795,757 | G→C | A277P (GCG→CCG) | waaF → | ADP‑heptose‑‑LPS heptosyltransferase 2 |
| RA | 3,797,159 | (A)6→5 | coding (212/1260 nt) | waaL → | O‑antigen ligase |
| RA | 3,863,817 | A→T | intergenic (‑214/‑82) | glvC ← / → yidP | putative PTS enzyme II component GlvC/putative DNA‑binding transcriptional regulator YidP |
| RA | 3,941,650 | A→G | intergenic (‑323/‑158) | yieP ← / → rrsC | putative transcriptional regulator YieP/16S ribosomal RNA |
| RA | 3,949,783 | (T)7→6 | coding (187/1521 nt) | yifB ← | putative magnesium chelatase YifB |
| RA | 4,007,952 | A→G | K66E (AAA→GAA) | rhtC → | L‑threonine exporter |
| RA | 4,098,551 | A→G | G272G (GGA→GGG) | rhaS → | DNA‑binding transcriptional activator RhaS |
| RA | 4,109,886 | T→C | intergenic (+63/‑44) | sbp → / → cdh | sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp/CDP‑diacylglycerol diphosphatase |
| RA | 4,175,853 | (T)6→5 | intergenic (+24/‑91) | thrT → / → tufB | tRNA‑Thr/translation elongation factor Tu 2 |
| RA | 4,371,109 | G→A | V29I (GTT→ATT) | groL → | chaperonin GroEL |
| RA | 4,503,704 | A→G | intergenic (‑273/‑354) | insG ← / → yjhB | KpLE2 phage‑like element; IS4 putative transposase/putative sialic acid transporter |
| RA | 4,638,175 | A→G | intergenic (+55/‑3) | creC → / → creD | sensory histidine kinase CreC/putative inner membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 236049 | 236788 | 740 | 6 [5] | [5] 7 | [dnaQ] | [dnaQ] |
| * | * | ÷ | NC_000913 | 583430 | 583528 | 99 | 6 [5] | [5] 6 | tfaX/appY | DLP12 prophage; protein TfaX/DNA‑binding transcriptional activator AppY |
| * | * | ÷ | NC_000913 | 3423703–3424234 | 3424580–3424238 | 5–878 | 6 [5] | [4] 6 | [rrfD]–[rrlD] | [rrfD],[rrlD] |