Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
502 |
34.8 |
1912488 |
98.2% |
1878063 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,012,483 |
Δ1 bp |
intergenic (+90/+131) |
yqeA → / ← yqeB |
putative amino acid kinase YqeA/XdhC‑CoxI family protein YqeB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,012,482 | 0 | C | . | 100.0%
| 105.7
/ NA
| 25 | intergenic (+89/+132) | yqeA/yqeB | putative amino acid kinase YqeA/XdhC‑CoxI family protein YqeB |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (11/14); total (11/14) |
CCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTATCCGTCCTACAAAACATCGCAAATTCAATAGATTGCAATGCACTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATT > NC_000913/3012402‑3012558
|
ccGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTATc < 1:547328/81‑1 (MQ=255)
gggtgggtAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTATcgt < 1:547329/81‑3 (MQ=255)
ggtgggtAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTATcgtc < 1:547330/81‑4 (MQ=255)
gtgggtAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTATcgtcc > 1:547360/1‑77 (MQ=255)
tgggtAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCt < 2:547331/81‑1 (MQ=255)
gggtAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTa > 1:547362/1‑81 (MQ=255)
tAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACaa < 2:547332/81‑1 (MQ=255)
aTACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACaaa < 2:547333/80‑1 (MQ=255)
tACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACaaaa > 1:547378/1‑80 (MQ=255)
cATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATc < 2:547334/81‑1 (MQ=255)
cAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTc < 1:547335/81‑1 (MQ=255)
aaaGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCa < 1:547336/81‑1 (MQ=255)
aaGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCaa < 1:547337/81‑1 (MQ=255)
aGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCaa > 1:547372/1‑80 (MQ=255)
aTTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCAATAg < 1:547338/81‑1 (MQ=255)
tGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCAATAGAt > 1:547380/1‑81 (MQ=255)
aagtaagtGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCAATAGATTGc > 1:547368/1‑80 (MQ=255)
aagtaagtGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCAATAGATTGCa < 2:547339/81‑1 (MQ=255)
agtGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCAATAGATTGCAATGc < 1:547340/80‑1 (MQ=255)
cTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCAATAGATTGCAATGCACTTGTa < 2:547341/81‑1 (MQ=255)
ttgttgATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCAATAGATTGCAATGCACTTGTAgg > 2:547367/1‑81 (MQ=255)
gATGCCGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCAATAGATTGCAATGCACTTGTAGGCCTGa > 2:547383/1‑81 (MQ=255)
ccGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCAATAGATTGCAATGCACTTGTAGGCCTGATaa < 2:547342/80‑1 (MQ=255)
ccGGATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCAATAGATTGCAATGCACTTGTAGGCCTGATAAg > 2:547376/1‑81 (MQ=255)
ggATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCAATAGATTGCAATGCACTTGTAGGCCTGATAAGCg > 1:547374/1‑81 (MQ=255)
ggATGCGGCGCGAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCAATAGATTGCAATGCACTTGTAGGCCTGATAAGCg > 1:547373/1‑81 (MQ=255)
gcgAGCGCCTTAT‑CGTCCTACAAAACATCGCAAATTCAATAGATTGCAATGCACTTGTAGGCCTGATAAGCGTAGCGCATc < 2:547343/81‑1 (MQ=255)
gcgcCTTAT‑CGTCCTACAAAACATCGCAAATTCAATAGATTGCAATGCACTTGTAGGCCTGATAAGCGTAGCGCATCAGGc < 2:547344/81‑1 (MQ=255)
cTTAT‑CGTCCTACAAAACATCGCAAATTCAATAGATTGCAATGCACTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtt > 1:547370/1‑81 (MQ=255)
|
CCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTATCCGTCCTACAAAACATCGCAAATTCAATAGATTGCAATGCACTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATT > NC_000913/3012402‑3012558
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
