Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
502 |
34.8 |
1912488 |
98.2% |
1878063 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,192,830 |
T→C |
I208T (ATA→ACA) |
yqiJ → |
putative inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,192,830 | 0 | T | C | 100.0%
| 61.7
/ NA
| 19 | I208T (ATA→ACA) | yqiJ | putative inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (14/5); total (14/5) |
ACTAAAGGAGACAAAGTGTTAATTATTTGCCGACTTTCTGCAACGCGATATTTGGCGGAAAATAATCCCTGGCCCCAAATATTGTAATTTATTAATCAAAAGGAAATTTAATAATGGATGATATTGTTAATTCTGTGCCCTCCTGGAT > NC_000913/3192751‑3192898
|
aCTAAAGGAGACAAAGTGTTAATTATTTGCCGACTTTCTGCAACGCGATATTTGGCGGAAAATAATCCCTGGCCCCAAata > 1:589053/1‑81 (MQ=255)
aCAAAGTGTTAATTATTTGCCGACTTTCTGCAACGCGATATTTGGCGGAAAATAATCCCTGGCCCCAAACATTGTAATtta < 2:589039/81‑1 (MQ=255)
aGTGTTAATTATTTGCCGACTTTCTGCAACGCGATATTTGGCGGAAAATAATCCCTGGCCCCAAACATTGTAATTTATTaa > 2:589062/1‑81 (MQ=255)
gtTAATTATTTGCCGACTTTCTGCAACGCGATATTTGGCGGAAAATAATCCCTGGCCCCAAACATTGTAATTTATTAATc > 2:589060/1‑80 (MQ=255)
aaTTATTTGCCGACTTTCTGCAACGCGATATTTGGCGGAAAATAATCCCTGGCCCCAAACATTGTAATTTATTAATCaa > 2:589059/1‑79 (MQ=255)
gCCGACTTTCTGCAACGCGATATTTGGCGGAAAATAATCCCTGGCCCCAAACATTGTAATTTATTAATCAAAAGGAAAtt > 1:589054/1‑80 (MQ=255)
gACTTTCTGCAACGCGATATTTGGCGGAAAATAATCCCTGGCCCCAAACATTGTAATTTATTAATCAAAAGGAAATTtaat < 2:589040/81‑1 (MQ=255)
aCTTTCTGCAACGCGATATTTGGCGGAAAATAATCCCTGGCCCCAAACATTGTAATTTATTAATCAAAAGGAAATTtaat > 1:589063/1‑80 (MQ=255)
ttCTGCAACGCGATATTTGGCGGAAAATAATCCCTGGCCCCAAACATTGTAATTTATTAATCAAAAGGAAATTTAATAATg > 2:589058/1‑81 (MQ=255)
cTGCAACGCGATATTTGGCGGAAAATAATCCCTGGCCCCAAACATTGTAATTTATTAATCAAAAGGAAATTTAATAATgg < 2:589041/80‑1 (MQ=255)
cTGCAACGCGATATTTGGCGGAAAATAATCCCTGGCCCCAAACATTGTAATTTATTAATCAAAAGGAAATTTAATAATGga > 1:589070/1‑81 (MQ=255)
aaCGCGATATTTGGCGGAAAATAATCCCTGGCCCCAAACATTGTAATTTATTAATCAAAAGGAAATTTAATAATGgatga > 2:589057/1‑80 (MQ=255)
aCGCGATATTTGGCGGAAAATAATCCCTGGCCCTAAACATTGTAATTTATTAATCAAAAGGAAATTTAATAATGGATGata > 1:589067/1‑81 (MQ=255)
gATATTTGGCGGAAAATAATCCCTGGCCCCAAACATTGTAATTTATTAATCAAAAGGAAATTTAATAATGGATGATATTGt < 2:589042/81‑1 (MQ=255)
gATATTTGGCGGAAAATAATCCCTGGCCCCAAACATTGTAATTTATTAATCAAAAGGAAATTTAATAATGGATGATATTGt > 1:589056/1‑81 (MQ=255)
tttGGCGGAAAATAATCCCTGGCCCCAAACATTGTAATTTATTAATCAAAAGGAAATTTAATAATGGATGATATTGTTAAt < 1:589043/81‑1 (MQ=255)
ggAAAATAATCCCTGGTCCCAAACATTGTAATTTATTAATCAAAAGGAAATTTAATAATGGATGATATTGTTAATTCtgtg > 2:589100/1‑81 (MQ=255)
gAAAATAATCCCTGGCCCCAAACATTGTAATTTATTAATCAAAAGGAAATTTAATAATGGATGATATTGTTAATTCTGTGc > 1:589071/1‑81 (MQ=255)
aaaTAATCCCTGGCCCCAAACATTGTAATTTATTAATCAAAAGGAAATTTAATAATGGATGATATTGTTAATTCTGTGccc > 2:589102/1‑81 (MQ=255)
ccTGGTCCCAAACTTTGTAATTTATTAATCAAAAGGAAATCTAATAATGGATGATATTGTTAATTCTGTGCCCTCCTGGAt > 2:589073/1‑81 (MQ=255)
|
ACTAAAGGAGACAAAGTGTTAATTATTTGCCGACTTTCTGCAACGCGATATTTGGCGGAAAATAATCCCTGGCCCCAAATATTGTAATTTATTAATCAAAAGGAAATTTAATAATGGATGATATTGTTAATTCTGTGCCCTCCTGGAT > NC_000913/3192751‑3192898
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
