Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
502 |
34.8 |
1912488 |
98.2% |
1878063 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,255,204 |
G→A |
A54A (GCG→GCA) |
yhaL → |
uncharacterized protein YhaL |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,255,204 | 0 | G | A | 100.0%
| 120.6
/ NA
| 33 | A54A (GCG→GCA) | yhaL | uncharacterized protein YhaL |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (18/15); total (18/15) |
AAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAA > NC_000913/3255131‑3255280
|
aaGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGa > 2:604117/1‑80 (MQ=255)
aaGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGAc < 1:604069/81‑1 (MQ=255)
gaTGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGt < 1:604070/81‑1 (MQ=255)
tGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTg < 2:604072/81‑1 (MQ=255)
tGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTg < 2:604071/81‑1 (MQ=255)
gTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGc > 2:604110/1‑81 (MQ=255)
ttGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGcc < 1:604073/81‑1 (MQ=255)
agcgagcTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGa > 2:604125/1‑81 (MQ=255)
gcgagcTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGAt < 2:604074/81‑1 (MQ=255)
gagcTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGATgc < 1:604075/81‑1 (MQ=255)
agcTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGATgcg > 2:604116/1‑81 (MQ=255)
agcTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGATgcg > 1:604115/1‑81 (MQ=255)
agcTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGATgcg > 1:604112/1‑81 (MQ=255)
gcTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGATgcgg < 1:604076/81‑1 (MQ=255)
tGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGATgcggc > 2:604114/1‑80 (MQ=255)
gAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGATgcggcg < 2:604077/79‑1 (MQ=255)
gCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGATGCGGCGAAAAc > 1:604108/1‑81 (MQ=255)
gcgGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATcc < 2:604078/81‑1 (MQ=255)
cgGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCg < 1:604079/81‑1 (MQ=255)
aaaCGCGTTTAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACaaa < 2:604080/81‑1 (MQ=255)
tttAGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCcaa > 1:604131/1‑80 (MQ=255)
aGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCcaacaa > 2:604120/1‑80 (MQ=255)
aGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCcaacaa > 1:604133/1‑80 (MQ=255)
aGCCGAGGATGAAGCTACCGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCcaacaa > 2:604124/1‑80 (MQ=255)
aTGAAGCTACCGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACg > 1:604129/1‑80 (MQ=255)
tGAAGCTACCGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGaa < 1:604081/81‑1 (MQ=255)
aaGCTACCGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAAt > 1:604126/1‑80 (MQ=255)
aGCTACCGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAAtt > 2:604128/1‑80 (MQ=255)
gCTACCGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTa > 1:604119/1‑80 (MQ=255)
gCTACCGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTa > 2:604137/1‑80 (MQ=255)
cTACCGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTaaa < 1:604082/81‑1 (MQ=255)
ccGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAatcaa < 2:604083/81‑1 (MQ=255)
ccGCATAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAaacaa > 1:604123/1‑81 (MQ=255)
|
AAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAA > NC_000913/3255131‑3255280
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
