Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
502 |
34.8 |
1912488 |
98.2% |
1878063 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,324,530 |
C→T |
A128T (GCG→ACG) |
folP ← |
dihydropteroate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,324,530 | 0 | C | T | 100.0%
| 123.0
/ NA
| 34 | A128T (GCG→ACG) | folP | dihydropteroate synthase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (23/11); total (23/11) |
ACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGCCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCGCTGACTCACGGATG > NC_000913/3324452‑3324606
|
aCTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCt > 2:619996/1‑81 (MQ=255)
cTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGtctc < 2:619957/81‑1 (MQ=255)
cGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTcc < 1:619958/79‑1 (MQ=255)
ggAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCa > 2:620004/1‑79 (MQ=255)
cTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAgcgc > 2:620005/1‑81 (MQ=255)
ccTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCa < 2:619959/80‑1 (MQ=255)
gCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCAGGtt > 2:620012/1‑81 (MQ=255)
gCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCAGGtt > 1:620014/1‑81 (MQ=255)
gTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGaa < 2:619960/81‑1 (MQ=255)
tttttGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGa > 1:620000/1‑79 (MQ=255)
tGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAgg > 2:619995/1‑79 (MQ=255)
tttCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCg > 2:620006/1‑80 (MQ=255)
ttCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGa > 1:620024/1‑81 (MQ=255)
tCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGa < 2:619961/80‑1 (MQ=255)
gCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCAt > 2:619972/1‑81 (MQ=255)
atatGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCAtt > 2:619998/1‑80 (MQ=255)
tGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATtaat < 1:619962/80‑1 (MQ=255)
gCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATtaataa > 1:620015/1‑81 (MQ=255)
cATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTaataat > 1:620026/1‑81 (MQ=255)
aTCAGACAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAAtg > 2:620008/1‑81 (MQ=255)
aCAAACCGGTAAACCGGTTTCTGCAGCCGTCACCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAgc < 2:619963/81‑1 (MQ=255)
cAAACCGGTAAACCGGTTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAgcg < 1:619964/81‑1 (MQ=255)
aaaccggtaaaccggtTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAgcgc > 1:620022/1‑81 (MQ=255)
accggtaaaccggtTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGcc > 1:620011/1‑80 (MQ=255)
accggtaaaccggtTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCa < 2:619965/81‑1 (MQ=255)
gtaaaccggtTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACtt < 1:619966/81‑1 (MQ=255)
accggtTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCGc > 1:620030/1‑81 (MQ=255)
accggtTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCGc > 2:620013/1‑81 (MQ=255)
ggtTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCGCTGa > 1:620028/1‑81 (MQ=255)
gtTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCGCTGAc > 1:620018/1‑81 (MQ=255)
gtTTCTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGACAACTTTCGCTGAc > 1:620023/1‑81 (MQ=255)
cTGCAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCGCTGACTCAc > 2:620019/1‑81 (MQ=255)
cAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCGCTGACTCACg < 1:619967/79‑1 (MQ=255)
cAGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCGCTGACTCACGGa > 2:620033/1‑81 (MQ=255)
aGCCGTCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCGCTGACTCACGGAt < 1:619968/81‑1 (MQ=255)
gccgtcTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCGCTGACTCACGGATg < 1:619969/81‑1 (MQ=255)
|
ACTTCGGAGCTTCCTGCATGGTTTTTGGATTTCCCTGCATATGCATCAGACAAACCGGTAAACCGGTTTCTGCAGCCGCCTCCAGAGCGCCAGGTTCGGAAAGGGAGCGGATATCATTAATAATGTGAGCGCCAACTTTCGCTGACTCACGGATG > NC_000913/3324452‑3324606
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
