Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
502 |
34.8 |
1912488 |
98.2% |
1878063 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,334,826 |
A→C |
intergenic (+145/‑83) |
ispB → / → sfsB |
all‑trans‑octaprenyl‑diphosphate synthase/putative transcriptional regulator SfsB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,334,826 | 0 | A | C | 100.0%
| 79.1
/ NA
| 23 | intergenic (+145/‑83) | ispB/sfsB | all‑trans‑octaprenyl‑diphosphate synthase/putative transcriptional regulator SfsB |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (14/9); total (14/9) |
TAACACCTGAAAAATAGGGATGTGCATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCTGAATGAAAGCGACTAACTTAAG > NC_000913/3334754‑3334896
|
taACACCTGAAAAATAGGGATGTGCATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGCGCAAt < 1:622341/78‑1 (MQ=255)
ccTGAAAAATAGGGATGTGCATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGCGCAATAGGCCATc < 2:622342/81‑1 (MQ=255)
aaaaaTAGGGATGTGCATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAgg < 2:622343/80‑1 (MQ=255)
aaaTAGGGATGTGCATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAGGAg > 1:622371/1‑80 (MQ=255)
aaaTAGGGATGTGCATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAGGAGt < 2:622344/81‑1 (MQ=255)
aTGTGCATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGAt > 2:622375/1‑81 (MQ=255)
aTGTGCATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGAt > 1:622369/1‑81 (MQ=255)
gCATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTc > 1:622365/1‑81 (MQ=255)
ttATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTCGACag > 2:622376/1‑80 (MQ=255)
ttATATATTCTGAATATTCACACTCTTTACAGGAACTCTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTCGACag > 1:622366/1‑80 (MQ=255)
tatataTTCTGAATATTCACACTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTCGAc < 2:622345/77‑1 (MQ=255)
cTGAATATTCACACTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGtt > 2:622368/1‑81 (MQ=255)
gAATATTCACACTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCt > 1:622359/1‑81 (MQ=255)
aaTATTCACACTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGtt < 2:622346/78‑1 (MQ=255)
aaTATTCACACTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCt > 1:622377/1‑80 (MQ=255)
cacaCTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCtgaatga > 2:622367/1‑80 (MQ=255)
cacaCTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCtgaatga > 2:622373/1‑80 (MQ=255)
acacTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCtgaatgaa < 1:622347/80‑1 (MQ=255)
acTCTTTACAGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCTGAATGAAAGc > 2:622372/1‑81 (MQ=255)
tACAGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCTGAATGAAAGCGACt < 1:622348/79‑1 (MQ=255)
cAGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCTGAATGAAAGCGACTAACt > 1:622370/1‑81 (MQ=255)
aGGAACTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCTGAATGAAAGCGACTAACtt < 2:622349/81‑1 (MQ=255)
cTTTTTAGCGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCTGAATGAAAGCGACTAACTTAAg > 1:622386/1‑79 (MQ=255)
|
TAACACCTGAAAAATAGGGATGTGCATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCTGAATGAAAGCGACTAACTTAAG > NC_000913/3334754‑3334896
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
