Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
502 |
34.8 |
1912488 |
98.2% |
1878063 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,353,250 |
Δ1 bp |
coding (801/930 nt) |
yhcC ← |
radical SAM family oxidoreductase YhcC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,353,248 | 0 | G | . | 100.0%
| 149.8
/ NA
| 35 | coding (803/930 nt) | yhcC | radical SAM family oxidoreductase YhcC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (23/12); total (23/12) |
GCCATGTTCATTCAGATAGCGATCCAGCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTCGGGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCGTATGGCGAATCATTTCTCCGGCAGTGAG > NC_000913/3353169‑3353324
|
gCCATGTTCATTCAGATAGCGATCCAGCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTCgg > 2:626897/1‑81 (MQ=255)
tGTTCATTCAGATAGCGATCCAGCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTCggcgac < 2:626885/81‑5 (MQ=255)
cattcaGATAGCGATCCAGCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGgc > 2:626937/1‑81 (MQ=255)
cattcaGATAGCGATCCAGCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGgc > 1:626939/1‑81 (MQ=255)
aGCGATCCAGCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCgg > 2:626966/1‑80 (MQ=255)
aGCGATCCAGCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCgg > 1:626945/1‑80 (MQ=255)
cGATCCAGCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGaaa > 2:626958/1‑81 (MQ=255)
gATCCAGCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAAt > 2:626929/1‑81 (MQ=255)
gATCCAGCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAAt > 1:626956/1‑81 (MQ=255)
aGCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCggt > 1:626936/1‑81 (MQ=255)
aGCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCggt > 1:626944/1‑81 (MQ=255)
gCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCggtg < 1:626887/81‑1 (MQ=255)
gCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCggtg > 1:626950/1‑81 (MQ=255)
gCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCggtg < 1:626886/81‑1 (MQ=255)
gACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTa < 2:626888/80‑1 (MQ=255)
ccATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGAt < 1:626889/81‑1 (MQ=255)
aTTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCa > 1:626955/1‑81 (MQ=255)
tCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACt > 2:626938/1‑81 (MQ=255)
cccGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACt < 1:626890/80‑1 (MQ=255)
ccGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTc > 1:626951/1‑81 (MQ=255)
cGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTcc < 1:626891/81‑1 (MQ=255)
gATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCg > 1:626983/1‑80 (MQ=255)
gATTTTCGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCg < 1:626892/80‑1 (MQ=255)
ttttCTCGCCACAGCGGAGCAAGCAGCGTC‑GGCGACAGGCGCTGGCGGAAATGCGGTGGTAAATCACTTCCGGTGGCGTAt < 2:626893/81‑1 (MQ=255)
cGCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCGTATGGc > 2:626949/1‑80 (MQ=255)
gCACCACAGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCGTATGGCg > 1:627023/1‑80 (MQ=255)
acaGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCGTATGGCGAATCAt < 1:626894/81‑1 (MQ=255)
aGCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCGTATGGCGAATCAttt < 2:626895/81‑1 (MQ=255)
gCGGAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCGTATGGCGAATCATTtc < 1:626896/81‑1 (MQ=255)
ggAGCAAGCAGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCGTATGGCGAATCATTtctc > 1:626948/1‑81 (MQ=255)
agcaagcaGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCGTATGGCGAATCATTTCTCCg > 1:626946/1‑81 (MQ=255)
gcaagcaGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCGTATGGCGAATCATTTCTCCgg > 2:626941/1‑81 (MQ=255)
gcaagcaGCGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCGTATGGCGAATCATTTCTCCgg > 2:626942/1‑81 (MQ=255)
gcagcGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCGTATGGCGAATCATTTCTCCGGCAGt < 1:626897/81‑1 (MQ=255)
gcagcGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCGTATGGCGAATCATTTCTCCGGCAGt > 1:626947/1‑81 (MQ=255)
cagcGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCGTATGGCGAATCATTTCTCCGGCAGt > 2:626943/1‑80 (MQ=255)
gcGTC‑GGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCGTATGGCGAATCATTTCTCCGGCAGTGAg > 1:626954/1‑81 (MQ=255)
|
GCCATGTTCATTCAGATAGCGATCCAGCTCGACCATTCCCGTCCATCGATTTTCGCACCACAGCGGAGCAAGCAGCGTCGGGCGACGGGCGCTGGCGGAAATGCGGTGGTAGATCACTTCCGGTGGCGTATGGCGAATCATTTCTCCGGCAGTGAG > NC_000913/3353169‑3353324
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
