Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
502 |
34.8 |
1912488 |
98.2% |
1878063 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,490,253 |
T→C |
intergenic (‑73/+13) |
argD ← / ← pabA |
N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase/aminodeoxychorismate synthase subunit 2 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,490,253 | 0 | T | C | 100.0%
| 120.8
/ NA
| 34 | intergenic (‑73/+13) | argD/pabA | N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase/aminodeoxychorismate synthase subunit 2 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (16/18); total (16/18) |
ATCTCATGATCACCCTGTTACGCATAAACAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAATGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGG > NC_000913/3490179‑3490329
|
aTCTCATGATCACCCTGTTACGCATAAACAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAACGGCAAt > 1:658925/1‑81 (MQ=255)
aTGATCACCCTGTTACGCATAAACAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGa > 1:658915/1‑80 (MQ=255)
ccTGTTACGCATAAACAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGa < 2:658873/81‑1 (MQ=255)
cTGTTACGCATAAACAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGAt < 2:658874/81‑1 (MQ=255)
tACGCATAAACAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAg > 1:658937/1‑81 (MQ=255)
aCGCATAAACAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAg < 2:658875/80‑1 (MQ=255)
tAAACAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAAtt < 1:658876/81‑1 (MQ=255)
tAAACAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAAt > 1:658902/1‑80 (MQ=255)
aaCAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAg < 2:658877/81‑1 (MQ=255)
aaCAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAg > 1:658916/1‑81 (MQ=255)
tgAAATTATAACCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGt < 2:658878/81‑1 (MQ=255)
tataACCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGt > 2:658914/1‑81 (MQ=255)
tataACCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGt > 2:658927/1‑81 (MQ=255)
ataACCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGt < 2:658879/80‑1 (MQ=255)
taACCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTc < 2:658880/80‑1 (MQ=255)
aCCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCtt < 2:658882/81‑1 (MQ=255)
aCCACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCtt < 1:658881/81‑1 (MQ=255)
ccACAAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTg < 2:658883/81‑1 (MQ=255)
caAAATATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTc > 2:658905/1‑81 (MQ=255)
aaaaTATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCg > 1:658917/1‑81 (MQ=255)
aaTATGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCt < 2:658884/81‑1 (MQ=255)
atGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCt > 2:658918/1‑78 (MQ=255)
tGCATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAg < 2:658885/80‑1 (MQ=255)
cATAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAAt < 1:658886/81‑1 (MQ=255)
aTAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATa > 2:658919/1‑81 (MQ=255)
tAAAAAATCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATAc > 2:658935/1‑81 (MQ=255)
aaaaaTCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACtt > 1:658923/1‑81 (MQ=255)
aaaaTCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACttt < 1:658887/81‑1 (MQ=255)
aaTCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCt < 1:658888/81‑1 (MQ=255)
aTCACTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCtg > 2:658934/1‑81 (MQ=255)
aCTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCtggat < 2:658889/81‑1 (MQ=255)
cTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCtggatg < 2:658890/81‑1 (MQ=255)
cTAAACGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCtggatg > 2:658931/1‑81 (MQ=255)
aaaCGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCtggatgg > 2:658932/1‑80 (MQ=255)
|
ATCTCATGATCACCCTGTTACGCATAAACAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAATGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGG > NC_000913/3490179‑3490329
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
