Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
502 |
34.8 |
1912488 |
98.2% |
1878063 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,460,452 |
G→A |
intergenic (‑88/+70) |
nrdG ← / ← nrdD |
anaerobic ribonucleoside‑triphosphate reductase activating protein/anaerobic ribonucleoside‑triphosphate reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,460,452 | 0 | G | A | 100.0%
| 137.9
/ NA
| 38 | intergenic (‑88/+70) | nrdG/nrdD | anaerobic ribonucleoside‑triphosphate reductase activating protein/anaerobic ribonucleoside‑triphosphate reductase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (15/23); total (15/23) |
GCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCT > NC_000913/4460376‑4460532
|
gCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACaa < 2:900472/80‑1 (MQ=255)
gCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACa < 1:900474/79‑1 (MQ=255)
gCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAAt < 2:900473/81‑1 (MQ=255)
cTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAAtt < 1:900475/81‑1 (MQ=255)
tATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGc > 1:900516/1‑81 (MQ=255)
aTCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGc < 2:900476/80‑1 (MQ=255)
tCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGcc < 2:900477/80‑1 (MQ=255)
aGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCaaa > 1:900522/1‑81 (MQ=255)
gTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAAt < 2:900478/81‑1 (MQ=255)
gcgTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAg < 2:900479/81‑1 (MQ=255)
gcgTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAg > 1:900514/1‑81 (MQ=255)
gcgTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAg > 1:900517/1‑81 (MQ=255)
gtgtAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGc < 1:900480/81‑1 (MQ=255)
tAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCgg < 2:900481/81‑1 (MQ=255)
aGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCTGACCTGGAACAATTGCCAAATGTAGGCCGGa > 2:900527/1‑81 (MQ=255)
aGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGa > 1:900513/1‑81 (MQ=255)
aGGCTGCATCCGGTAATCAATGACTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGa > 1:900512/1‑81 (MQ=255)
cATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAgg < 2:900482/80‑1 (MQ=255)
cATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGc < 2:900483/81‑1 (MQ=255)
aTCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCg > 1:900524/1‑81 (MQ=255)
tCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGt < 2:900485/81‑1 (MQ=255)
tCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGt < 2:900484/81‑1 (MQ=255)
cGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGtt < 1:900486/80‑1 (MQ=255)
aaTCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTAcgc > 2:900543/1‑81 (MQ=255)
aTCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTAcgc < 1:900487/80‑1 (MQ=255)
aTGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCAt < 1:900488/81‑1 (MQ=255)
aTGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCAt < 2:900489/81‑1 (MQ=255)
tGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATc < 1:900490/81‑1 (MQ=255)
aTGCGACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAt < 2:900491/81‑1 (MQ=255)
gACGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGc > 1:900532/1‑81 (MQ=255)
aCGCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCt > 1:900519/1‑81 (MQ=255)
gCTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCt > 1:900521/1‑79 (MQ=255)
cTGTCGCGTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAg > 1:900520/1‑81 (MQ=255)
gcgTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCt > 2:900525/1‑78 (MQ=255)
gcgTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCa < 1:900492/80‑1 (MQ=255)
cgTCTTATCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCa > 1:900530/1‑79 (MQ=255)
aTCAGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTg < 2:900493/78‑1 (MQ=255)
aGACCTGGAACAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGAtt < 1:900494/81‑1 (MQ=255)
gCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCt < 1:900496/81‑1 (MQ=255)
|
GCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCT > NC_000913/4460376‑4460532
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
