Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,928,914 |
C→T |
S229F (TCT→TTT) |
sdaC → |
serine:H(+) symporter SdaC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,928,914 | 0 | C | T | 100.0%
| 202.4
/ NA
| 56 | S229F (TCT→TTT) | sdaC | serine:H(+) symporter SdaC |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (24/32); total (24/32) |
CGGAAACGGTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTCTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTGGCATTCGCA > NC_000913/2928837‑2928990
|
cGGAAACGGTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCttttc < 1:532526/81‑1 (MQ=255)
aaaCGGTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCAtcttttcttt > 2:532586/1‑81 (MQ=255)
aaaCGGTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCAtcttttcttt > 1:532587/1‑81 (MQ=255)
aaCGGTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTtttctttc > 1:532580/1‑81 (MQ=255)
cGGTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGc < 2:532527/81‑1 (MQ=255)
cGGTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGc > 1:532572/1‑81 (MQ=255)
ggTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGcc > 1:532576/1‑81 (MQ=255)
gTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCg < 1:532528/81‑1 (MQ=255)
gTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCg < 1:532529/81‑1 (MQ=255)
cTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGtt > 2:532598/1‑81 (MQ=255)
tgGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGtt < 1:532530/78‑1 (MQ=255)
aTGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAg < 2:532531/81‑1 (MQ=255)
aTGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAg > 2:532584/1‑81 (MQ=255)
tGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGc < 2:532532/81‑1 (MQ=255)
aCCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCg < 1:532533/80‑1 (MQ=255)
cTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGaa < 1:532534/81‑1 (MQ=255)
tggctggcAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAag < 2:532535/79‑1 (MQ=255)
ggctggcAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAagag > 2:532585/1‑80 (MQ=255)
gctggcAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGt < 1:532536/80‑1 (MQ=255)
gctggcAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTa > 1:532581/1‑81 (MQ=255)
gcAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACgg < 1:532537/80‑1 (MQ=255)
gcAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGc > 1:532611/1‑81 (MQ=255)
gcAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGc < 2:532538/81‑1 (MQ=255)
cAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGc > 2:532605/1‑80 (MQ=255)
cAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCg < 2:532539/81‑1 (MQ=255)
cAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTCTCGCCGTTGCGAAGCGTGAAGAGTACGGCg < 2:532540/81‑1 (MQ=255)
aaTTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTCTCGCCGTTGCGAAGCGTGAAGAGTACGGCGa > 2:532589/1‑81 (MQ=255)
aTTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGat < 1:532541/81‑1 (MQ=255)
aTTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGa > 2:532575/1‑80 (MQ=255)
ttCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGata < 1:532542/81‑1 (MQ=255)
ccGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGatat < 2:532543/80‑1 (MQ=255)
cGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATg < 2:532545/80‑1 (MQ=255)
cGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATg < 2:532544/80‑1 (MQ=255)
ggTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATgg > 2:532601/1‑80 (MQ=255)
ggTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGc < 1:532546/81‑1 (MQ=255)
aTGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGcaga < 1:532548/80‑1 (MQ=255)
aTGGTGTTCTCGATCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGcaga < 1:532547/80‑1 (MQ=255)
gtgtTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGcagaacag < 2:532549/81‑1 (MQ=255)
tgtTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGcagaacaga < 1:532550/81‑1 (MQ=255)
tgtTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGcagaacag > 2:532602/1‑80 (MQ=255)
gtTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGcagaacaga > 1:532604/1‑80 (MQ=255)
gtTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGcagaacaga > 2:532615/1‑80 (MQ=255)
ttCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGaaa > 2:532609/1‑81 (MQ=255)
ctcGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATg > 1:532590/1‑81 (MQ=255)
cGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCt > 1:532595/1‑81 (MQ=255)
ttCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCg < 2:532552/81‑1 (MQ=255)
ttCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCg < 1:532551/81‑1 (MQ=255)
cAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGa < 2:532553/80‑1 (MQ=255)
aaCCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCg > 2:532613/1‑78 (MQ=255)
ccACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGAt < 1:532554/81‑1 (MQ=255)
tctcCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTg > 1:532600/1‑81 (MQ=255)
ctcCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGTGTACGGCGATATGGCAGAACAGAATTGCTCGAAGACCCTgg > 1:532617/1‑81 (MQ=255)
tcCGATCATCTTTTCTTTCCCCGTTCCTAAGCGTGAAGAGTACGTCCCTATTGCATAACAGTAATTCTCCAAGATCCTGGc > 2:977421/1‑81 (MQ=255)
cGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTGGc < 2:532556/79‑1 (MQ=255)
cGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTGGc < 2:532555/79‑1 (MQ=255)
cGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTGGCAt > 1:532597/1‑81 (MQ=255)
gATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTGGCAtt > 1:532594/1‑81 (MQ=255)
atcatcTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTGGCATTc < 1:532557/81‑1 (MQ=255)
tcatcTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTGGCATTCg > 2:532630/1‑81 (MQ=255)
atcTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTGGCATTCGca < 1:532558/81‑1 (MQ=255)
|
CGGAAACGGTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTCTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTGGCATTCGCA > NC_000913/2928837‑2928990
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
