Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,928,914 |
C→T |
S229F (TCT→TTT) |
sdaC → |
serine:H(+) symporter SdaC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,928,914 | 0 | C | T | 100.0%
| 107.8
/ NA
| 30 | S229F (TCT→TTT) | sdaC | serine:H(+) symporter SdaC |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (10/20); total (10/20) |
AACGGTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTCTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTGGCATTCGCA > NC_000913/2928841‑2928990
|
aaCGGTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTtttctttc < 1:477273/81‑1 (MQ=255)
aCGGTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCg < 2:477274/81‑1 (MQ=255)
ggTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGcc < 1:477275/81‑1 (MQ=255)
aCCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGt < 2:477276/81‑1 (MQ=255)
tgtgGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTg > 1:477326/1‑78 (MQ=255)
tggctggcAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAaga < 1:477277/80‑1 (MQ=255)
tggctggcAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAag < 2:477279/79‑1 (MQ=255)
tggctggcAATTCCGGTAATGGTGTTCTCATTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAag < 2:477278/79‑1 (MQ=255)
gctggcAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGt < 2:477281/80‑1 (MQ=255)
gctggcAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGt < 1:477280/80‑1 (MQ=255)
gcAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGc < 1:477282/81‑1 (MQ=255)
aaTTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGa > 1:477330/1‑81 (MQ=255)
aTTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGat < 2:477283/81‑1 (MQ=255)
ttCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGata < 1:477284/81‑1 (MQ=255)
tCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGatat > 1:477307/1‑81 (MQ=255)
tCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGatat > 1:477334/1‑81 (MQ=255)
ccGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGatat < 1:477285/80‑1 (MQ=255)
ccGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATg > 1:477338/1‑81 (MQ=255)
gTAATGGTGTTCTCGTTCAAACACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGca < 1:477286/81‑1 (MQ=255)
ggTGTTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGcagaa > 2:477331/1‑79 (MQ=255)
gtgtTCTCGTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGcagaacag < 2:477287/81‑1 (MQ=255)
gTTCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTc > 2:477332/1‑81 (MQ=255)
tCAACCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCg > 2:477335/1‑80 (MQ=255)
aaCCACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAg < 1:477288/81‑1 (MQ=255)
cACTCTCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATc < 1:477289/81‑1 (MQ=255)
ctctCCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCt < 1:477290/81‑1 (MQ=255)
tcCGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTg < 2:477291/79‑1 (MQ=255)
cGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTGGCa < 2:477292/80‑1 (MQ=255)
cGATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTGGCAt < 2:477293/81‑1 (MQ=255)
gATCATCTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTGGCAtt > 2:477343/1‑81 (MQ=255)
atcTTTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTGGCATTCGca > 2:477333/1‑81 (MQ=255)
|
AACGGTCTGTGGATGACCCTGTGGCTGGCAATTCCGGTAATGGTGTTCTCGTTCAACCACTCTCCGATCATCTCTTCTTTCGCCGTTGCGAAGCGTGAAGAGTACGGCGATATGGCAGAACAGAAATGCTCGAAGATCCTGGCATTCGCA > NC_000913/2928841‑2928990
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
