Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,032,582 |
C→T |
P406S (CCG→TCG) |
uacT → |
urate:H(+) symporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,032,582 | 0 | C | T | 100.0%
| 120.3
/ NA
| 34 | P406S (CCG→TCG) | uacT | urate:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (12/22); total (12/22) |
GCGCTGTAACTACACCACCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTCCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTACATAGCGGCATTATGCTCGC > NC_000913/3032512‑3032658
|
gcgcTGTAACTACACCACCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGctct < 1:554766/80‑1 (MQ=255)
cgcTGTAACTACACCACCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGctctct < 1:554767/81‑1 (MQ=255)
tGTAACTACACCACCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCAc > 2:554803/1‑81 (MQ=255)
tAACTACACCACCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACg < 2:554768/80‑1 (MQ=255)
tAACTACACCACCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGa > 2:554834/1‑81 (MQ=255)
tAACTACACCACCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGa > 2:554812/1‑81 (MQ=255)
aCTACACCACCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGAt < 2:554769/80‑1 (MQ=255)
aCTACACCACCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGAt < 1:554770/80‑1 (MQ=255)
caccacCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGAtttct < 2:554772/80‑1 (MQ=255)
caccacCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGAtttc < 2:554771/79‑1 (MQ=255)
accaACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGAtttcttttct < 2:554773/81‑1 (MQ=255)
caACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGAtttcttttct > 2:554825/1‑79 (MQ=255)
aaCCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAg < 1:554774/81‑1 (MQ=255)
aaCCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAg > 1:554822/1‑81 (MQ=255)
aaCCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAg > 1:554818/1‑81 (MQ=255)
cAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGc < 1:554775/81‑1 (MQ=255)
aaCCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGcc < 2:554776/81‑1 (MQ=255)
aCCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCg < 2:554777/81‑1 (MQ=255)
ccTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCg > 1:554835/1‑80 (MQ=255)
tataTTGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTAc < 1:554778/79‑1 (MQ=255)
ttGTGGCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCaa < 2:554779/80‑1 (MQ=255)
gCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCgctg < 1:554780/81‑1 (MQ=255)
gCGATCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCgctg < 1:554781/81‑1 (MQ=255)
tCAGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTAc < 2:554782/81‑1 (MQ=255)
aGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTACa > 2:554819/1‑80 (MQ=255)
aGTCTCGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTACAt < 2:554783/81‑1 (MQ=255)
ctcGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTACATAGc > 1:554827/1‑81 (MQ=255)
tcGGCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTACATAGCg > 1:554831/1‑81 (MQ=255)
ggCGTTGGCATGACTTCGACGCTCTATCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTACATAGCGGc < 1:554784/81‑1 (MQ=255)
gCGTTGGCATGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTACATAGCGGCa > 2:554844/1‑81 (MQ=255)
aTGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTACATAGCGGCATTATGCTc < 1:554786/81‑1 (MQ=255)
aTGACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTACATAGCGGCATTATGCTc < 1:554785/81‑1 (MQ=255)
gACTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTACATAGCGGCATTATGCTCg > 2:554839/1‑80 (MQ=255)
aCTTCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTACATAGCGGCATTATGCTCGc < 2:554787/80‑1 (MQ=255)
|
GCGCTGTAACTACACCACCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTCCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTACATAGCGGCATTATGCTCGC > NC_000913/3032512‑3032658
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
