Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,257,401 |
G→T |
H204N (CAT→AAT) |
cyuP ← |
putative D/L‑serine transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,257,401 | 0 | G | T | 100.0%
| 146.9
/ NA
| 41 | H204N (CAT→AAT) | cyuP | putative D/L‑serine transporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (24/17); total (24/17) |
AGGGTAAACGGCAGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATGCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCATGCCGGTCGAAATTTTG > NC_000913/3257325‑3257477
|
aGGGTAAACGGCAGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCca > 2:609169/1‑80 (MQ=255)
gggTAAACGGCAGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCcaca > 1:609160/1‑81 (MQ=255)
ggTAAACGGCAGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACAt > 2:609167/1‑81 (MQ=255)
gTAAACGGCAGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACAtt > 2:609157/1‑81 (MQ=255)
gTAAACGGCAGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACAtt < 1:609122/81‑1 (MQ=255)
ggCAGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCccacc < 1:609123/81‑1 (MQ=255)
gCAGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCccacca < 1:609124/81‑1 (MQ=255)
gTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGac < 1:609125/81‑1 (MQ=255)
aataatGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGacac > 2:609166/1‑81 (MQ=255)
aatGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGcc > 1:609170/1‑81 (MQ=255)
atGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGcc < 2:609126/80‑1 (MQ=255)
ggCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAg > 2:609150/1‑81 (MQ=255)
gCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAgc < 1:609127/81‑1 (MQ=255)
tttttCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGcgcc < 2:609128/81‑1 (MQ=255)
tttttCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGcgcc < 2:609129/81‑1 (MQ=255)
ttCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGcgccgc < 2:609130/80‑1 (MQ=255)
tCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCcgcg < 1:609131/80‑1 (MQ=255)
cACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGac > 1:609174/1‑81 (MQ=255)
cACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGac > 2:609176/1‑81 (MQ=255)
aCCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGac > 2:609172/1‑80 (MQ=255)
agcagcCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCTCACCAGCGACACGCCCAGCGCCGCGaccac > 2:609178/1‑80 (MQ=255)
agcagcCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGaccac > 2:609184/1‑80 (MQ=255)
cagcCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACcag > 1:609171/1‑81 (MQ=255)
cagcCCCAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACcag < 1:609132/81‑1 (MQ=255)
cAGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCtt > 1:609173/1‑81 (MQ=255)
aGCGGCGGTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTg < 2:609133/81‑1 (MQ=255)
ggTAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAg > 2:609182/1‑80 (MQ=255)
tAGCGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCAc > 1:609185/1‑81 (MQ=255)
cGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCAt < 2:609135/81‑1 (MQ=255)
cGAACCGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCAt < 1:609134/81‑1 (MQ=255)
cGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCATGCCgg > 2:609191/1‑81 (MQ=255)
cGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCATGCCgg < 1:609136/81‑1 (MQ=255)
cGACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCATGCCgg > 1:609177/1‑81 (MQ=255)
gACGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCATGCCGGt > 1:609188/1‑81 (MQ=255)
aCGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCATGCCGGTc < 1:609137/81‑1 (MQ=255)
cGTTATACAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCATGCCGGTc > 2:609168/1‑80 (MQ=255)
tataCAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCATGCCGGTCGaaa > 1:609181/1‑81 (MQ=255)
ataCAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCATGCCGGTCGaaa < 1:609138/80‑1 (MQ=255)
aCAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCATGCCGGTCGAAAttt > 2:609179/1‑81 (MQ=255)
cAGATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCATGCCGGTCGAAAtttt > 2:609175/1‑81 (MQ=255)
gATTCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCATGCCGGTCGAAATTTTg > 2:609189/1‑80 (MQ=255)
|
AGGGTAAACGGCAGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATGCCACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCATGCCGGTCGAAATTTTG > NC_000913/3257325‑3257477
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
