Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,315,439 |
A→G |
R192R (CGT→CGC) |
infB ← |
translation initiation factor IF‑2 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,315,439 | 0 | A | G | 100.0%
| 239.5
/ NA
| 68 | R192R (CGT→CGC) | infB | translation initiation factor IF‑2 |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (39/29); total (39/29) |
GTTATCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGACGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCTGGGCGTTTT > NC_000913/3315361‑3315515
|
gatATCAGTCCATTTGTTTTCTTCCGCCATACGACGCGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTacggcg > 1:623271/3‑81 (MQ=255)
gTTATCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTacggcg > 1:623268/1‑81 (MQ=255)
ttATCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGgcgc < 1:623170/81‑1 (MQ=255)
ttATCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGgcgc < 1:623169/81‑1 (MQ=255)
tCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGct > 1:623244/1‑81 (MQ=255)
aGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGctt < 1:623171/80‑1 (MQ=255)
gTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGcttct < 2:623173/81‑1 (MQ=255)
gTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGcttct > 2:623247/1‑81 (MQ=255)
gTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGcttct < 1:623172/81‑1 (MQ=255)
tCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGcttctt < 1:623174/81‑1 (MQ=255)
cATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGcttcttc < 2:623175/80‑1 (MQ=255)
aTTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGcttcttctt > 1:623232/1‑81 (MQ=255)
tttGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGcttcttctt > 2:623235/1‑80 (MQ=255)
tttGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCttcttcttc < 1:623176/81‑1 (MQ=255)
ttGTTTTCTTCCGCCATGCGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGcttcttctt > 2:623266/1‑79 (MQ=255)
tGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCa < 2:623177/80‑1 (MQ=255)
tGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAg > 2:623263/1‑81 (MQ=255)
tGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCCTCTTCGAGTTTACGGCGCGCTTCTTCTTCAg > 2:623264/1‑81 (MQ=255)
gTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGc > 2:623248/1‑81 (MQ=255)
tttCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCtt > 1:623258/1‑81 (MQ=255)
ttcttcCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCtt > 2:623243/1‑80 (MQ=255)
tcttcCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCttt < 1:623178/80‑1 (MQ=255)
cttcCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTAc > 1:623241/1‑81 (MQ=255)
ttcCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACg > 1:623237/1‑81 (MQ=255)
tcCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACTGCGCGCTTCTTCTTCAGCTTTACGc > 1:623256/1‑81 (MQ=255)
cGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCtt < 2:623180/81‑1 (MQ=255)
cGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCtt < 1:623181/81‑1 (MQ=255)
cGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCt < 1:623179/80‑1 (MQ=255)
gCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTTAGCTTTACGCTTg < 2:623183/81‑1 (MQ=255)
gCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTg < 1:623182/81‑1 (MQ=255)
aTACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGc < 2:623184/81‑1 (MQ=255)
cgacgTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGctct < 1:623185/81‑1 (MQ=255)
gacgTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTg > 2:623234/1‑81 (MQ=255)
gacgTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTg > 1:623217/1‑81 (MQ=255)
gacgTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTg > 1:623272/1‑81 (MQ=255)
gacgTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTg > 2:623236/1‑81 (MQ=255)
cgTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTg > 2:623242/1‑79 (MQ=255)
gTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAg < 1:623186/81‑1 (MQ=255)
tGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGc > 2:623261/1‑81 (MQ=255)
gCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCt > 2:623280/1‑81 (MQ=255)
cttcttCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCtt < 2:623187/81‑1 (MQ=255)
tcttcAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTcc > 2:623251/1‑81 (MQ=255)
tcttcAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTcc > 2:623249/1‑81 (MQ=255)
cAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCt < 2:623188/78‑1 (MQ=255)
cAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCt > 2:623286/1‑81 (MQ=255)
gCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCa > 1:623259/1‑81 (MQ=255)
gCAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCa > 2:623279/1‑81 (MQ=255)
cAACGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCAc < 2:623189/81‑1 (MQ=255)
aaCGCGACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCAcg > 2:623267/1‑81 (MQ=255)
cgACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCAcggcgg > 2:623288/1‑81 (MQ=255)
gACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCggg > 1:623276/1‑81 (MQ=255)
gACGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCggg < 2:623190/81‑1 (MQ=255)
aCGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGc < 1:623192/81‑1 (MQ=255)
aCGTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGc < 1:623191/81‑1 (MQ=255)
gTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCtt > 2:623281/1‑81 (MQ=255)
gTGCTTCTTCTTCGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCtt > 1:623296/1‑81 (MQ=255)
ttcttcttcGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCttttt > 2:623269/1‑80 (MQ=255)
cttcttcGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAg > 2:623270/1‑81 (MQ=255)
cttcGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGcc < 2:623193/80‑1 (MQ=255)
ttcGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCTg > 1:623273/1‑81 (MQ=255)
tcGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCTgg > 2:623254/1‑81 (MQ=255)
cGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCt < 1:623196/78‑1 (MQ=255)
cGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCt < 2:623194/78‑1 (MQ=255)
cGAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCTgg < 1:623195/80‑1 (MQ=255)
gAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCTGGGc < 2:623198/81‑1 (MQ=255)
gAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCTGGGc > 2:623291/1‑81 (MQ=255)
gAGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCTGGGc < 1:623197/81‑1 (MQ=255)
aGTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCTGGGCg > 2:623282/1‑81 (MQ=255)
gTTTACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCTGGGCGt > 1:623295/1‑81 (MQ=255)
tttACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCTGGGCGtt < 2:623199/81‑1 (MQ=255)
tACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCTGGGCGtttt > 2:623287/1‑81 (MQ=255)
tACGGCGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCTGGGCGtttt > 2:623309/1‑81 (MQ=255)
acggcgCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCTGGGCGtttt < 1:623200/80‑1 (MQ=255)
acggcgCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCTGGGCGtttt > 1:623262/1‑80 (MQ=255)
|
GTTATCAGTCCATTTGTTTTCTTCCGCCATACGACGTGCTTCTTCAGCAACGCGACGTGCTTCTTCTTCGAGTTTACGACGCGCTTCTTCTTCAGCTTTACGCTTGAGCTCTGCAGCTTCCTGCTCACGGCGGGCTTTTTCAGCCTGGGCGTTTT > NC_000913/3315361‑3315515
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
