Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,317,713 |
C→T |
E98E (GAG→GAA) |
rimP ← |
ribosome maturation factor RimP |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,317,713 | 0 | C | T | 100.0%
| 119.4
/ NA
| 33 | E98E (GAG→GAA) | rimP | ribosome maturation factor RimP |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (19/14); total (19/14) |
GTCTACCGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACCTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGACTTCCAG > NC_000913/3317644‑3317787
|
gTCTACCGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGa > 2:560781/1‑80 (MQ=255)
gTCTACCGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGa > 1:560774/1‑80 (MQ=255)
gTCTACCGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGa > 1:560772/1‑80 (MQ=255)
tCTACCGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACa < 1:560735/81‑1 (MQ=255)
cTACCGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACa > 2:560760/1‑80 (MQ=255)
ccGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACaa < 2:560735/78‑1 (MQ=255)
cGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACg > 1:560780/1‑81 (MQ=255)
cGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACg > 1:560779/1‑81 (MQ=255)
gCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACgg < 1:560737/81‑1 (MQ=255)
aTAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTa < 2:560737/80‑1 (MQ=255)
aTAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAg > 1:560783/1‑81 (MQ=255)
aCGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAgtgt < 1:560739/81‑1 (MQ=255)
aCGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAgtg < 2:560739/80‑1 (MQ=255)
gCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTc < 1:560741/81‑1 (MQ=255)
ccATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCg < 2:560742/80‑1 (MQ=255)
acATTTACGACGGTTTTGTACCGCCATACGGAGAAACAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGcc < 1:560742/78‑1 (MQ=255)
acgacgGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAg > 2:560791/1‑81 (MQ=255)
ggTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGc < 1:560744/81‑1 (MQ=255)
ttGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATc > 1:560781/1‑81 (MQ=255)
ccGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGAc < 1:560745/81‑1 (MQ=255)
ccATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCg > 1:560784/1‑81 (MQ=255)
aCGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGt > 2:560785/1‑79 (MQ=255)
aCGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGt > 1:560790/1‑79 (MQ=255)
cGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTgag > 1:560789/1‑81 (MQ=255)
ggAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTgag > 2:560797/1‑80 (MQ=255)
gagaACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTgag > 1:560746/1‑79 (MQ=255)
aaCCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGAc < 1:560747/81‑1 (MQ=255)
aaCCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGAc < 1:560748/81‑1 (MQ=255)
aCCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGACt > 1:560808/1‑81 (MQ=255)
ccAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGACtt > 2:560790/1‑81 (MQ=255)
gagTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGACTTc > 2:560795/1‑79 (MQ=255)
gagTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGACTTc > 2:560796/1‑79 (MQ=255)
agTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGACTTCCAg < 1:560749/81‑1 (MQ=255)
|
GTCTACCGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACCTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGACTTCCAG > NC_000913/3317644‑3317787
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
