Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,487,359 |
A→G |
H190R (CAC→CGC) |
yhfK → |
putative transporter YhfK |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,487,359 | 0 | A | G | 100.0%
| 119.3
/ NA
| 35 | H190R (CAC→CGC) | yhfK | putative transporter YhfK |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (20/15); total (20/15) |
CTGCGCGAGTCACTAAGTCTGCTGTACCGTGAACTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCACACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAGCGGTCGATCTAATTACCCAGTGCTAT > NC_000913/3487283‑3487435
|
cTGCGCGAGTCACTAAGTCTGCTGTACTGTGAACTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCAcc > 2:665702/1‑81 (MQ=255)
cTGCGCGAGTCACTAAGTCTGCTGTACCGTGAACTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCAcc > 1:665722/1‑81 (MQ=255)
gcgAGTCACTAAGTCTGCTGTACCGTGAACTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGaac > 1:665686/1‑79 (MQ=255)
aGTCACTAAGTCTGCTGTACCGTGAACTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCt > 2:665706/1‑80 (MQ=255)
aCTAAGTCTGCTGTACCGTGAACTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGaaaa < 2:665666/81‑1 (MQ=255)
aCTAAGTCTGCTGTACCGTGAACTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGaaa < 1:665667/80‑1 (MQ=255)
tAAGTCTGCTGTACCGTGAACTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAg > 2:665724/1‑81 (MQ=255)
aaGTCTGCTGTACCGTGAACTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAgc > 2:665720/1‑81 (MQ=255)
aGTCTGCTGTACCGTGAACTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAgcg > 2:665711/1‑81 (MQ=255)
gTCTGCTGTACCGTGAACTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAgcgc < 2:665668/81‑1 (MQ=255)
tgTACCGTGAACTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTgccgc > 1:665738/1‑81 (MQ=255)
gTACCGTGAACTGGCAGATCATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTgccgcc > 1:665714/1‑81 (MQ=255)
ccGTGAACTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCgct < 2:665669/81‑1 (MQ=255)
gAACTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGctgctg > 2:665732/1‑81 (MQ=255)
aCTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGt > 1:665721/1‑81 (MQ=255)
gCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTgcgc > 2:665719/1‑81 (MQ=255)
gCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTgc < 2:665670/79‑1 (MQ=255)
gCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTgc < 1:665671/79‑1 (MQ=255)
aGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTgcgc > 2:665735/1‑79 (MQ=255)
tattGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCa > 1:665727/1‑80 (MQ=255)
attGTGAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCaa < 2:665672/80‑1 (MQ=255)
gtgAAGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAg > 1:665728/1‑81 (MQ=255)
aaGCCAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAGCgg > 2:665731/1‑81 (MQ=255)
ccAAATACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAGCGGTCg < 2:665673/81‑1 (MQ=255)
aTACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAGCGGTCGATCt < 2:665674/81‑1 (MQ=255)
aTACAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAGCGGTCGATCt < 1:665675/81‑1 (MQ=255)
aCAGCCTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAGCGGTCGATCTaa > 2:952927/1‑81 (MQ=255)
cTGCTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAGCGGTCGATCTAATTAcc > 2:665734/1‑81 (MQ=255)
cTTACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAGCGGTCGATCTAATTACCCa < 1:665676/80‑1 (MQ=255)
ttACCCAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAGCGGTCGATCTAATTACCCAGt > 1:665733/1‑81 (MQ=255)
cccAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAGCGGTCGATCTAATTACCCAGTGc < 2:665677/80‑1 (MQ=255)
cccAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAGCGGTCGATCTAATTACCCAGTGCt < 1:665678/81‑1 (MQ=255)
cAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAGCGGTCGATCTAATTACCCAGTGCTAt < 2:665680/81‑1 (MQ=255)
cAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAGCGGTCGATCTAATTACCCAGTGCTAt < 1:665679/81‑1 (MQ=255)
cAGCGCACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAGCGGTCGATCTAATTACCCAGTGCTAt > 1:665739/1‑81 (MQ=255)
|
CTGCGCGAGTCACTAAGTCTGCTGTACCGTGAACTGGCAGATTATTGTGAAGCCAAATACAGCCTGCTTACCCAGCACACCGACCCTGAAAAAGCGCTGCCGCCGCTGCTGGTGCGCCAGCAAAAAGCGGTCGATCTAATTACCCAGTGCTAT > NC_000913/3487283‑3487435
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
