Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,493,804 |
T→C |
intergenic (+55/‑207) |
tsgA → / → nirB |
putative transporter TsgA/nitrite reductase catalytic subunit NirB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,493,804 | 0 | T | C | 100.0%
| 100.6
/ NA
| 29 | intergenic (+55/‑207) | tsgA/nirB | putative transporter TsgA/nitrite reductase catalytic subunit NirB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (8/21); total (8/21) |
CATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTG > NC_000913/3493726‑3493879
|
cATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCAc < 1:667356/81‑1 (MQ=255)
cATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCAc < 1:667355/81‑1 (MQ=255)
cATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCCTCCCCCGCCAc < 2:667354/81‑1 (MQ=255)
aTAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACg > 1:667383/1‑81 (MQ=255)
aaCACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACGTg > 1:667385/1‑81 (MQ=255)
cccTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATc < 1:667357/81‑1 (MQ=255)
cccTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATc < 1:667358/81‑1 (MQ=255)
cTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTa > 1:667394/1‑81 (MQ=255)
ctctCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCt < 1:667359/81‑1 (MQ=255)
aTTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCg < 2:667360/81‑1 (MQ=255)
gCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCt < 2:667361/80‑1 (MQ=255)
cTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTc < 2:667363/80‑1 (MQ=255)
cTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTc < 1:667364/80‑1 (MQ=255)
cTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTCa < 2:667362/81‑1 (MQ=255)
cATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTCAtt > 2:667391/1‑81 (MQ=255)
aTGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTCAt < 2:667365/79‑1 (MQ=255)
gCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTCATTTTg > 1:667389/1‑81 (MQ=255)
ccGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTCATTTTg < 1:667366/80‑1 (MQ=255)
ggACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTCATTTTGTc > 1:667395/1‑80 (MQ=255)
gtcCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTCTTTTTTGCACAAACa > 1:667398/1‑81 (MQ=255)
gtcCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAAc < 1:667367/80‑1 (MQ=255)
gtcCGGCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAAc < 2:667368/80‑1 (MQ=255)
ggCCTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGaa < 2:667369/81‑1 (MQ=255)
ccTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAat < 2:667371/81‑1 (MQ=255)
ccTTTTCCTCTCTTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAat < 1:667370/81‑1 (MQ=255)
ctctTCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAATATCAGACaa > 2:667390/1‑81 (MQ=255)
ttCCCCCGCCACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAATATCAGACaa < 1:667372/78‑1 (MQ=255)
cccccGCCACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAATATCAGACAATTc < 1:667373/79‑1 (MQ=255)
cccGCCACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTg < 2:667374/81‑1 (MQ=255)
|
CATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTG > NC_000913/3493726‑3493879
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
