Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,590,742 |
T→C |
D57G (GAT→GGT) |
ugpA ← |
sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,590,742 | 0 | T | C | 100.0%
| 161.8
/ NA
| 46 | D57G (GAT→GGT) | ugpA | sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (24/22); total (24/22) |
GTGACAAAGGTGCTGAATTTTATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTATCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTGTAGCGAGTACCACAACGCTTCGCCCGCAGGC > NC_000913/3590664‑3590819
|
gTGACAAAGGTGCTGAATTTTATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTAccc < 1:693191/81‑1 (MQ=255)
gTGACAAAGGTGCTGAATTTTATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTAccc < 2:693190/81‑1 (MQ=255)
cAAAGGTGCTGAATTTTATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGc > 1:695335/1‑81 (MQ=255)
aaaGGTGCTGAATTTTATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGcc > 2:693248/1‑81 (MQ=255)
aGGTGCTGAATTTTATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGa < 1:693192/81‑1 (MQ=255)
gAATTTTATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAActg > 2:693262/1‑81 (MQ=255)
aaTTTTATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAActgg > 1:693281/1‑81 (MQ=255)
aaTTTTATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAActgg < 2:693194/81‑1 (MQ=255)
aaTTTTATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAActg < 2:693193/80‑1 (MQ=255)
ttttATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAActggct < 2:693195/81‑1 (MQ=255)
tttATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAActggctg > 1:693246/1‑81 (MQ=255)
tttATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAActggctg > 1:693251/1‑81 (MQ=255)
ttATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAActggctg < 2:693196/80‑1 (MQ=255)
tATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAActggctgg < 2:693197/80‑1 (MQ=255)
tATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAActggctg > 1:693252/1‑79 (MQ=255)
tcgtcCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAAc > 1:693274/1‑81 (MQ=255)
cgtcCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAAc > 2:693257/1‑80 (MQ=255)
cgtcCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAAc > 2:693254/1‑80 (MQ=255)
gtcCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAAcc > 2:693266/1‑80 (MQ=255)
gtcCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAAcc > 2:693268/1‑80 (MQ=255)
ccAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCaaa > 2:693265/1‑81 (MQ=255)
ccAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCaaa > 1:693277/1‑81 (MQ=255)
cAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAAc < 1:693198/81‑1 (MQ=255)
cAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAAc < 2:693199/81‑1 (MQ=255)
cAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAAc > 2:693267/1‑81 (MQ=255)
aGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACg < 1:693200/81‑1 (MQ=255)
ggAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATc > 1:693269/1‑81 (MQ=255)
ggAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATc > 1:693260/1‑81 (MQ=255)
ggAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATc > 1:693250/1‑81 (MQ=255)
gAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCg < 2:693201/81‑1 (MQ=255)
aGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGa < 1:693202/81‑1 (MQ=255)
aGTCGAGATAGTAGCTGTCATGGAACAGCGTAACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGa < 2:693203/81‑1 (MQ=255)
gTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGAc < 2:693204/81‑1 (MQ=255)
gagaTAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCt < 1:693205/81‑1 (MQ=255)
aTAGTAGCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTg > 2:693273/1‑81 (MQ=255)
gtagCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTGTa < 1:693206/80‑1 (MQ=255)
gCTGTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTGTAGc > 1:693259/1‑79 (MQ=255)
gTCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTGTAGCGAGTa > 2:693271/1‑81 (MQ=255)
tCATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTGTAGCGAGTa < 2:693207/80‑1 (MQ=255)
cATGGAACAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTGTAGCGAGTAc > 2:693258/1‑80 (MQ=255)
aaCAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTGTAGCGAGTACCACAAc < 1:693209/81‑1 (MQ=255)
aaCAGCGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTGTAGCGAGTACCACAAc < 1:693208/81‑1 (MQ=255)
cGTGACGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTGTAGCGAGTACCACAACGCTTc < 2:693210/81‑1 (MQ=255)
aCGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTGTAGCGAGTACCACAACGCTTCGccc < 1:693211/81‑1 (MQ=255)
cGAAGTTACTCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTGTAGCGAGTACCACAACGCTTCGCCCg > 1:693263/1‑81 (MQ=255)
cGAAGTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTGTAGCGAGTACCACAACGCTTCGCCCg < 2:693212/81‑1 (MQ=255)
gTTACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTGTAGCGAGTACCACAACGCTTCGCCCGCAgg > 1:693278/1‑81 (MQ=255)
ttACCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTGTAGCGAGTACCACAACGCTTCGCCCGCAGGc < 1:693213/81‑1 (MQ=255)
|
GTGACAAAGGTGCTGAATTTTATCGTCGTCCAGAAGGAGTCGAGATAGTAGCTGTCATGGAACAGCGTGACGAAGTTATCCAGGCCGACAAACTGGCTGGAGAAACCAAACGGATCGACGCTTTGTAGCGAGTACCACAACGCTTCGCCCGCAGGC > NC_000913/3590664‑3590819
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
