Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,498,047 |
(G)6→7 |
intergenic (+107/‑225) |
intB → / → insC‑6 |
KpLE2 phage‑like element; putative integrase/KpLE2 phage‑like element; IS2 insertion element repressor InsA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,498,041 | 1 | . | G | 100.0%
| 49.5
/ NA
| 16 | intergenic (+101/‑231) | intB/insC‑6 | KpLE2 phage‑like element; putative integrase/KpLE2 phage‑like element; IS2 insertion element repressor InsA |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (5/11); total (5/11) |
ATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCA‑GGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAA > NC_000913/4497967‑4498112
|
attCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCA‑gggggg > 1:931559/1‑81 (MQ=255)
tAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCA‑gggggggat > 2:931565/1‑77 (MQ=255)
tGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCcgcg < 2:931542/79‑1 (MQ=255)
tGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCgg < 2:931543/80‑1 (MQ=255)
ttAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGtt < 1:931544/80‑1 (MQ=255)
ttAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTa > 1:931566/1‑81 (MQ=255)
aaaGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCat > 1:931564/1‑81 (MQ=255)
aaGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCatt < 1:931545/81‑1 (MQ=255)
aCAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCattatt < 2:931546/81‑1 (MQ=255)
aaaCGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCAttattta > 1:931568/1‑81 (MQ=255)
aCGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTtata < 2:931547/81‑1 (MQ=255)
ttAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACAtt < 1:931549/81‑1 (MQ=255)
ttAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACAtt < 2:931548/81‑1 (MQ=255)
aCTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCaa > 1:931570/1‑81 (MQ=255)
tacCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCAt < 2:931550/80‑1 (MQ=255)
acCGCTCCCTGCAGGGGGGGATTATCAGAATCCGAGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATa < 1:931551/80‑1 (MQ=255)
gCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATaaaa > 2:931563/1‑80 (MQ=255)
cTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATaaaaaa < 2:931552/81‑1 (MQ=255)
|
ATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCA‑GGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAA > NC_000913/4497967‑4498112
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
