Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,898,999 |
Δ1 bp |
coding (420/1455 nt) |
ygcU ← |
putative FAD‑containing dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,898,996 | 0 | C | . | 100.0%
| 103.5
/ NA
| 25 | coding (423/1455 nt) | ygcU | putative FAD‑containing dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (9/16); total (9/16) |
GAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCA > NC_000913/2898918‑2899072
|
gagTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATGccc < 2:471426/81‑1 (MQ=255)
gagTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATGcc < 2:471425/80‑1 (MQ=255)
gtgtGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATGcccgt < 2:471428/81‑3 (MQ=255)
gtgtGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATGcccgt < 2:471427/81‑3 (MQ=255)
tgtgGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATGcccgtg > 2:471467/1‑78 (MQ=255)
tgtgGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATGcccgtg < 2:471429/81‑4 (MQ=255)
tgGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATG‑CCCgtggt < 2:471430/81‑1 (MQ=255)
gagaACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATG‑CCCgtggtg > 2:471475/1‑80 (MQ=255)
cccGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATG‑CCCGTGGTGTAACCtt < 1:471431/79‑1 (MQ=255)
aTACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCAc < 1:471432/81‑1 (MQ=255)
tCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAAc > 2:471470/1‑81 (MQ=255)
cTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTc < 2:471433/81‑1 (MQ=255)
aGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCa > 2:471489/1‑81 (MQ=255)
ggCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCAc > 1:471481/1‑81 (MQ=255)
cccATCTGCGCCAGCGGCTTTGACTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCa < 2:471434/81‑1 (MQ=255)
ccATCTGCGCCAGCGGCTTTGACTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAg < 1:471435/81‑1 (MQ=255)
cTGCGCCAGCGGCTTTGACTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCgg > 2:471483/1‑80 (MQ=255)
tGCGCCAGCGGCTTTGACTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGaa > 1:471482/1‑81 (MQ=255)
aGCGGCTTTGACTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAAcacca > 2:471476/1‑80 (MQ=255)
cTTTGACTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTgc < 1:471436/81‑1 (MQ=255)
gACTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGcc < 1:471439/80‑1 (MQ=255)
gACTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGcc < 1:471438/80‑1 (MQ=255)
gACTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGcc < 1:471437/80‑1 (MQ=255)
cTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTc < 1:471442/81‑1 (MQ=255)
cTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTc < 1:471440/81‑1 (MQ=255)
cTGCGGAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTc < 2:471441/81‑1 (MQ=255)
ggAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCt < 1:471443/81‑1 (MQ=255)
ggAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCt < 2:471444/81‑1 (MQ=255)
ggAGAATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCt > 1:471493/1‑81 (MQ=255)
gaATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCa > 2:471486/1‑81 (MQ=255)
gaATG‑CCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCa < 1:471445/81‑1 (MQ=255)
|
GAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCA > NC_000913/2898918‑2899072
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
