Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,967,332 |
Δ1 bp |
coding (1103/2247 nt) |
ptsP ← |
phosphoenolpyruvate‑protein phosphotransferase PtsP |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,967,331 | 0 | G | . | 100.0%
| 156.4
/ NA
| 37 | coding (1104/2247 nt) | ptsP | phosphoenolpyruvate‑protein phosphotransferase PtsP |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (20/17); total (20/17) |
AGCAATTCACCGCGATAGCCATCAACGATCAGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACTA > NC_000913/2967254‑2967407
|
aGCAATTCACCGCGATAGCCATCAACGATCAGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACgtag < 2:485194/81‑4 (MQ=255)
cAATTCACCGCGATAGCCATCAACGATCAGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACgtagg > 1:485263/1‑76 (MQ=255)
cAATTCACCGCGATAGCCATCAACGATCAGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAggg < 1:485195/81‑1 (MQ=255)
aCCGCGATAGCCATCAACGATCAGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATccc < 1:485196/80‑1 (MQ=255)
ccGCGATAGCCATCAACGATCAGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATccc > 2:485268/1‑79 (MQ=255)
cgcgATAGCCATCAACGATCAGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAg > 2:485250/1‑81 (MQ=255)
cgcgATAGCCATCAACGATCAGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAg > 2:485239/1‑81 (MQ=255)
aGCCATCAACGATCAGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACg > 1:485291/1‑81 (MQ=255)
gCCATCAACGATCAGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACg > 2:485245/1‑80 (MQ=255)
tCAGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCgc < 1:485197/81‑1 (MQ=255)
aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCgcag > 1:485261/1‑81 (MQ=255)
gCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCgcagc < 2:485198/81‑1 (MQ=255)
gTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCAt > 2:485260/1‑81 (MQ=255)
gTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCAt > 1:485257/1‑81 (MQ=255)
gTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCAt < 1:485199/81‑1 (MQ=255)
ccTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATgg > 1:485244/1‑81 (MQ=255)
cTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATggg < 2:485200/81‑1 (MQ=255)
cTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATgg < 1:485201/80‑1 (MQ=255)
aCGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAg > 1:485271/1‑81 (MQ=255)
cGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGa < 1:485202/79‑1 (MQ=255)
gATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGtt > 2:485269/1‑81 (MQ=255)
gATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGtt > 1:485253/1‑81 (MQ=255)
gATGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGtt > 2:485254/1‑81 (MQ=255)
aTGCAGCACCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTg > 1:485262/1‑81 (MQ=255)
gcagcaCCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGc > 2:485256/1‑81 (MQ=255)
agcaCCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTg < 2:485203/81‑1 (MQ=255)
aCCGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTgcgc < 1:485204/81‑1 (MQ=255)
ccGAAGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGcc < 1:485205/81‑1 (MQ=255)
aaGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCAtc > 1:485259/1‑81 (MQ=255)
aGGCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCAtct < 1:485206/81‑1 (MQ=255)
gCTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCg > 2:485272/1‑81 (MQ=255)
cTGAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGc < 1:485207/81‑1 (MQ=255)
gAATATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCAc > 2:485249/1‑81 (MQ=255)
aaTATCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACg < 1:485208/81‑1 (MQ=255)
atatCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGa > 1:485270/1‑81 (MQ=255)
tatCCGCGCCCATCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGac < 1:485209/81‑1 (MQ=255)
aTCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACt > 1:485274/1‑80 (MQ=255)
aTCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACTa < 2:485210/81‑1 (MQ=255)
aTCAC‑GTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACTa < 1:485211/81‑1 (MQ=255)
|
AGCAATTCACCGCGATAGCCATCAACGATCAGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACTA > NC_000913/2967254‑2967407
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
