Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,099,780 |
Δ1 bp |
coding (949/1047 nt) |
ansB ← |
L‑asparaginase 2 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,099,779 | 0 | C | . | 100.0%
| 138.4
/ NA
| 33 | coding (950/1047 nt) | ansB | L‑asparaginase 2 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (18/15); total (18/15) |
GCTGGATCTGCTGCGGATCTTTGGTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTGCCAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTCGGCATCCTGAGTGGTAGCGCCCGTCGGTACGCGGG > NC_000913/3099702‑3099851
|
gctggatctgctgCGGATCTTTGGTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTGca > 2:512304/1‑78 (MQ=255)
ggatctgctgCGGATCTTTGGTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGc > 1:512307/1‑81 (MQ=255)
gatctgctgCGGATCTTTGGTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGcg < 2:512261/81‑1 (MQ=255)
tctgctgCGGATCTTTGGTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGcgac > 2:512311/1‑81 (MQ=255)
gctgcGGATCTTTGGTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGcgacg > 1:512308/1‑79 (MQ=255)
ctgcGGATCTTTGGTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGcgac < 1:512264/77‑1 (MQ=255)
ctgcGGATCTTTGGTTAGCGTCAGAGCCAGTTGCAGCAGAAAGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAg < 1:512263/81‑1 (MQ=255)
cGGATCTTTGGTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGcc < 2:512265/80‑1 (MQ=255)
cGGATCTTTGGTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCg < 1:512265/81‑1 (MQ=255)
ggATCTTTGGTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGt < 2:512266/81‑1 (MQ=255)
gATCTTTGGTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTa > 1:512318/1‑81 (MQ=255)
aTCTTTGGTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTAt > 1:512324/1‑81 (MQ=255)
cTTTGGTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTAttt > 1:512317/1‑81 (MQ=255)
tGGTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTAt < 1:512268/76‑1 (MQ=255)
gTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGcat < 2:512268/81‑1 (MQ=255)
gCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCatcatc > 1:512309/1‑81 (MQ=255)
cGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCatcatc > 2:512300/1‑80 (MQ=255)
agagCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACtt > 2:512325/1‑81 (MQ=255)
agagCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACt < 2:512269/80‑1 (MQ=255)
gagCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTc > 1:512311/1‑81 (MQ=255)
agCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTCg > 2:512318/1‑81 (MQ=255)
gCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTCgg < 2:512270/81‑1 (MQ=255)
ttGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTCGGCATcc < 1:512272/81‑1 (MQ=255)
gcagcaGAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTCGGCATCCt < 1:512273/80‑1 (MQ=255)
agAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTCGGCATCCTGAGTgg < 1:512274/81‑1 (MQ=255)
gAACGCGCGCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTCGGCATCCTGAGTGGt < 2:512274/81‑1 (MQ=255)
cgcgcgCTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTCGGCATCCTGAGTGGTAgc < 2:512275/81‑1 (MQ=255)
gcgcgcTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTCGGCATCCTGAGTGGTAgcg > 1:512329/1‑81 (MQ=255)
cgcgcTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTCGGCATCCTGAGTGGTAgcgc > 2:512321/1‑81 (MQ=255)
gcgcTTTTTGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTCGGCATCCTGAGTGGTAGCGcc > 1:512321/1‑81 (MQ=255)
tttttGCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTCGGCATCCTGAGTGGTAGCGCCCGTc > 1:512315/1‑81 (MQ=255)
gCGGGTTCAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCTACTTCGGCATCCTGAGTGGTAGCGCCCGTCGGTAc > 1:512316/1‑81 (MQ=255)
cAGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTCGGCATCCTGAGTGGTAGCGCCCGTCGGTACGCggg > 2:512335/1‑79 (MQ=255)
aGCGTG‑CAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTCGGCATCCTGAGTGGTAGCGCCCGTCGGTACGCggg > 2:512322/1‑78 (MQ=255)
|
GCTGGATCTGCTGCGGATCTTTGGTTTGCGTCAGAGCCAGTTGCAGCAGAACGCGCGCTTTTTGCGGGTTCAGCGTGCCAGAGGCGACGAAGCCGTATTTCGCATCATCCACTTCGGCATCCTGAGTGGTAGCGCCCGTCGGTACGCGGG > NC_000913/3099702‑3099851
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
