Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,268,304 |
(C)6→5 |
coding (451/540 nt) |
yhaB → |
protein YhaB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,268,299 | 0 | C | . | 100.0%
| 99.4
/ NA
| 24 | coding (446/540 nt) | yhaB | protein YhaB |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (8/16); total (8/16) |
ATAAAAAAGAGCTGGAATGTATTAAGGAGACGATTTCTAAGTATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAACCCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTT > NC_000913/3268221‑3268374
|
aTAAAAAAGAGCTGGAATGTATTAAGGAGACGATTTCTAAGTATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAAccc < 2:549410/81‑1 (MQ=255)
aaaaaaGAGCTGGAATGTATTAAGGAGACGATTTCTAAGTATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAAccccc > 2:549444/1‑81 (MQ=255)
aaaaGAGCTGGAATGTATTAAGGAGACGATTTCTAAGTATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAAccccctt > 2:549438/1‑79 (MQ=255)
agagCTGGAATGTATTAAGGAGACGATTTCTAAGTATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAA‑CCCCCTtgtg < 1:549412/81‑1 (MQ=255)
gCTGGAATGTATTAAGGAGACGATTTCTAAGTATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCAc < 2:549412/81‑1 (MQ=255)
aTGTATTAAGGGGACGATTTCTAAGTATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTtaat < 1:549414/81‑1 (MQ=255)
aTGTATTAAGGAGACGATTTCTAAGTATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTtaa > 2:549442/1‑80 (MQ=255)
agaCGATTTCTAAGTATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCAt < 2:549414/81‑1 (MQ=255)
cGATTTCTAAGTATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTAc < 2:549415/81‑1 (MQ=255)
aTTTCTAAGTATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACtt < 2:549416/81‑1 (MQ=255)
cTAAGTATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAg < 2:549417/80‑1 (MQ=255)
aGTATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGAttg > 1:549441/1‑81 (MQ=255)
aGTATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGAttg < 2:549418/81‑1 (MQ=255)
tATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGAttgtt < 2:549419/81‑1 (MQ=255)
ttGTGCAAAATTCACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGAttgttg < 1:549421/80‑1 (MQ=255)
gtgCAAAATTCACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGc < 2:549421/80‑1 (MQ=255)
gtgCAAAATTCACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGc > 2:549443/1‑80 (MQ=255)
tgCAAAATTCACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCa < 2:549422/80‑1 (MQ=255)
cACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCttt > 2:549448/1‑81 (MQ=255)
cACCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCtt < 2:549423/80‑1 (MQ=255)
aCCCGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCCCTTTATTAAACCAGGCATTCCTTCAGATGGTTGCCAATTCCTCtttt > 2:549445/1‑81 (MQ=255)
cGAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCttttttt > 1:549447/1‑81 (MQ=255)
gAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTc < 1:549426/81‑1 (MQ=255)
gAAAAGAAGCCATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTc < 1:549425/81‑1 (MQ=255)
ccATCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCa < 2:549426/81‑1 (MQ=255)
aTCTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCAtt > 1:549455/1‑81 (MQ=255)
cTTAA‑CCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCAttt > 2:549455/1‑80 (MQ=255)
|
ATAAAAAAGAGCTGGAATGTATTAAGGAGACGATTTCTAAGTATTGTGCAAAATTCACCCGAAAAGAAGCCATCTTAACCCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTT > NC_000913/3268221‑3268374
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
