Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,313,786 |
C→T |
L743L (CTG→CTA) |
infB ← |
translation initiation factor IF‑2 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,313,786 | 0 | C | T | 100.0%
| 179.0
/ NA
| 49 | L743L (CTG→CTA) | infB | translation initiation factor IF‑2 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (22/27); total (22/27) |
GGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTACGCCAGAACCGATGATCTTC > NC_000913/3313708‑3313861
|
ggAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAg > 2:559779/1‑81 (MQ=255)
ggAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAg > 2:559747/1‑81 (MQ=255)
ggAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAg > 2:559746/1‑81 (MQ=255)
ggAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAg > 1:559763/1‑81 (MQ=255)
gAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAg > 2:559782/1‑80 (MQ=255)
gtaACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGc < 2:559697/81‑1 (MQ=255)
taACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCg > 1:559764/1‑81 (MQ=255)
aaCGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGt > 1:559766/1‑81 (MQ=255)
cAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGa < 2:559698/81‑1 (MQ=255)
aGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGAc > 1:559775/1‑81 (MQ=255)
aTCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGAcgc < 1:559700/81‑1 (MQ=255)
tcaaGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGAcgcc < 2:559700/78‑1 (MQ=255)
cAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGAcgccg > 1:559770/1‑80 (MQ=255)
tCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCa < 2:559701/79‑1 (MQ=255)
ccGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAggg > 1:559774/1‑81 (MQ=255)
cGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGt < 1:559703/81‑1 (MQ=255)
gCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTg > 1:559760/1‑81 (MQ=255)
cTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTgg > 1:559771/1‑81 (MQ=255)
cAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCg < 1:559704/80‑1 (MQ=255)
cAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGt > 2:559767/1‑81 (MQ=255)
aaTCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTc < 1:559705/81‑1 (MQ=255)
aTCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCg < 2:559705/81‑1 (MQ=255)
tCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCgg > 1:559776/1‑81 (MQ=255)
aCTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGtt > 1:559767/1‑81 (MQ=255)
aCTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGt < 2:559706/80‑1 (MQ=255)
cTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGttt < 1:559708/81‑1 (MQ=255)
ttACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCg > 2:559771/1‑81 (MQ=255)
tACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTc < 2:559708/79‑1 (MQ=255)
tACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCgg > 1:559759/1‑81 (MQ=255)
tACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCg < 1:559710/80‑1 (MQ=255)
tACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCg < 2:559710/80‑1 (MQ=255)
tGCAGAGGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGAt < 1:559712/81‑1 (MQ=255)
agagGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATacc < 1:559713/81‑1 (MQ=255)
agGCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATaccac > 2:559768/1‑81 (MQ=255)
gCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCt < 2:559713/81‑1 (MQ=255)
gCATCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCt < 2:559714/81‑1 (MQ=255)
aTCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTAc < 2:559715/81‑1 (MQ=255)
aTCAGCACGTACGTTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTAc < 2:559716/81‑1 (MQ=255)
acgtacgtTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTACGCCAGa < 1:559718/81‑1 (MQ=255)
cgtacgtTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTACGCCAGaa > 2:559776/1‑81 (MQ=255)
tacgtTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTACGCCAGAAcc > 1:559781/1‑81 (MQ=255)
tacgtTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTACGCCAGAAcc < 1:559721/81‑1 (MQ=255)
tacgtTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTACGCCAGAAcc < 2:559719/81‑1 (MQ=255)
tacgtTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTACGCCAGAAcc < 1:559719/81‑1 (MQ=255)
acgtTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTACGCCAGAAcc > 2:559772/1‑80 (MQ=255)
cgtTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTACGCCAGAACCga > 1:559792/1‑81 (MQ=255)
gtTAAAGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTACGCCAGAACCgat < 2:559721/81‑1 (MQ=255)
aGCCAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTACGCCAGAACCGATGATCt < 1:559723/81‑1 (MQ=255)
ccAACTAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTACGCCAGAACCGATGATCTTc < 1:559724/81‑1 (MQ=255)
|
GGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGCAGAGGCATCAGCACGTACGTTAAAGCCAACCAGGATGGCGTTGGACGCCGCAGCCAGGGTGGCGTCGGTTTCGGTGATACCACCTACGCCAGAACCGATGATCTTC > NC_000913/3313708‑3313861
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
