Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,375,973 |
G→A |
G369S (GGC→AGC) |
dcuD → |
putative transporter DcuD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,375,973 | 0 | G | A | 100.0%
| 131.6
/ NA
| 37 | G369S (GGC→AGC) | dcuD | putative transporter DcuD |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (16/21); total (16/21) |
GGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGGGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATCGCAGCCGGACTACATGTACCAGC > NC_000913/3375897‑3376046
|
ggAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGctc > 2:574428/1‑81 (MQ=255)
ggAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGctc > 1:574426/1‑81 (MQ=255)
aGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTg > 2:574408/1‑81 (MQ=255)
gCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTgg < 2:574352/81‑1 (MQ=255)
gCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTgg > 1:574404/1‑81 (MQ=255)
cATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGc < 2:574353/81‑1 (MQ=255)
ggtctggGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATgcg > 2:574423/1‑81 (MQ=255)
gtctggGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATgcgc < 1:574355/81‑1 (MQ=255)
tctggGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGcc < 2:574356/81‑1 (MQ=255)
tctggGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGcc < 2:574355/81‑1 (MQ=255)
gCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTa < 1:574358/81‑1 (MQ=255)
cGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTAt > 1:574412/1‑81 (MQ=255)
cGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTAt < 1:574359/81‑1 (MQ=255)
ggTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATg < 2:574359/81‑1 (MQ=255)
ggTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATg < 2:574360/81‑1 (MQ=255)
ggCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCAttt > 1:574436/1‑81 (MQ=255)
gCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCAttt < 1:574362/80‑1 (MQ=255)
gCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTg > 2:574432/1‑81 (MQ=255)
atgatTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAg < 1:574363/80‑1 (MQ=255)
gatTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCt > 2:574430/1‑81 (MQ=255)
attattATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCtt < 2:574363/81‑1 (MQ=255)
ttatGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTc < 1:574365/81‑1 (MQ=255)
ttatGGCGCTGGTCATTGCCATTTGTGCCACTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTc > 2:574427/1‑81 (MQ=255)
gcgcTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGaa > 1:574427/1‑80 (MQ=255)
cTGGTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATc < 2:574365/81‑1 (MQ=255)
ggTCATTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATCg > 1:574423/1‑80 (MQ=255)
ggTCATTGCCATTTGTGCCATCGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATCg > 2:574418/1‑80 (MQ=255)
aTTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATCGCAGcc > 2:574419/1‑81 (MQ=255)
aTTGCCATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATCGCAGcc > 2:574433/1‑81 (MQ=255)
ccATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATCGCAGCCGGAc > 1:574430/1‑81 (MQ=255)
ccATTTGTGCCATTGTGATGAGCTCTGGCAATGCGCCGTTCATGTCATTTGCCAGTCTTATTCCGAATATCGCAGCCGGAc < 1:574367/81‑1 (MQ=255)
gtgCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATCGCAGCCGGACTACAt < 1:574368/80‑1 (MQ=255)
tgCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATCGCAGCCGGACTACATg < 1:574369/80‑1 (MQ=255)
tgCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATCGCAGCCGGACTACATGt < 2:574370/81‑1 (MQ=255)
tgCCATTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATCGCAGCCGGACTACATGt < 2:574369/81‑1 (MQ=255)
aTTGTGATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATCGCAGCCGGACTACATGTACCa < 2:574371/81‑1 (MQ=255)
gtgATGAGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATCGCAGCCGGACTACATGTACCAGc < 1:574373/80‑1 (MQ=255)
|
GGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGGGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATCGCAGCCGGACTACATGTACCAGC > NC_000913/3375897‑3376046
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
