Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,894,763 |
T→A |
L190I (TTA→ATA) |
ygcP → |
putative anti‑terminator regulatory protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,894,763 | 0 | T | A | 100.0%
| 123.5
/ NA
| 35 | L190I (TTA→ATA) | ygcP | putative anti‑terminator regulatory protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (17/18); total (17/18) |
GATGCGCGTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCG > NC_000913/2894685‑2894838
|
gaTGCGCGTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATa > 1:499825/1‑81 (MQ=255)
aaTGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACgg > 2:499819/1‑81 (MQ=255)
aaTGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACgg > 1:499820/1‑81 (MQ=255)
cGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGAt > 1:499826/1‑80 (MQ=255)
cGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATa < 2:499776/81‑1 (MQ=255)
aTTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAAt < 1:499777/81‑1 (MQ=255)
aaCGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCg > 1:499804/1‑80 (MQ=255)
cgGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAAc > 2:499823/1‑80 (MQ=255)
tgtCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAAtt < 2:499778/81‑1 (MQ=255)
tCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGa < 2:499779/81‑1 (MQ=255)
tGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAAtt > 1:499824/1‑81 (MQ=255)
gcgcTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTg < 2:499780/81‑1 (MQ=255)
gcTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGt < 1:499781/81‑1 (MQ=255)
cTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGtt < 2:499782/81‑1 (MQ=255)
ccaccaCGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTgct > 2:499836/1‑79 (MQ=255)
accacGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGAttt < 1:499783/81‑1 (MQ=255)
cGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAg < 1:499784/81‑1 (MQ=255)
gAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAgg > 1:499834/1‑81 (MQ=255)
aTACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGcc < 1:499785/81‑1 (MQ=255)
aCCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCg > 2:499831/1‑80 (MQ=255)
cTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCcaca > 1:499835/1‑81 (MQ=255)
cTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCcaca > 1:499827/1‑81 (MQ=255)
ggACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATc > 1:499832/1‑81 (MQ=255)
gACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACAt < 1:499788/79‑1 (MQ=255)
gACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATcc < 1:499787/81‑1 (MQ=255)
gACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATcc < 2:499790/81‑1 (MQ=255)
gACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATc < 2:499789/80‑1 (MQ=255)
gACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATc < 2:499786/80‑1 (MQ=255)
aCGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATcc > 1:499847/1‑80 (MQ=255)
aCGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATcc > 1:499844/1‑80 (MQ=255)
aCGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCg < 2:499791/81‑1 (MQ=255)
ttAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACa < 2:499792/81‑1 (MQ=255)
aGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACAtt > 1:499828/1‑81 (MQ=255)
gCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACAtt > 1:499842/1‑80 (MQ=255)
aaaaaaATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAgc < 1:499793/81‑1 (MQ=255)
aaaaaaTACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAgcg < 2:499794/81‑1 (MQ=255)
|
GATGCGCGTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCG > NC_000913/2894685‑2894838
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
