Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,894,763 |
T→A |
L190I (TTA→ATA) |
ygcP → |
putative anti‑terminator regulatory protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,894,763 | 0 | T | A | 100.0%
| 142.7
/ NA
| 39 | L190I (TTA→ATA) | ygcP | putative anti‑terminator regulatory protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (18/21); total (18/21) |
GCGCGTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGC > NC_000913/2894688‑2894839
|
gcgcGTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATATCGGGGTCTGGACGTTAGCGAAAAAAATACtt > 2:535443/1‑81 (MQ=255)
gcgcGTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACtt > 1:535455/1‑81 (MQ=255)
cgcgTAGTGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACttt < 1:535403/81‑1 (MQ=255)
cgcgTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACttt > 1:535444/1‑81 (MQ=255)
gcgTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTg < 1:535404/81‑1 (MQ=255)
gcgTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATAATTTg < 2:535405/81‑1 (MQ=255)
tGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGa < 2:535406/81‑1 (MQ=255)
cGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATa < 1:535407/81‑1 (MQ=255)
aaCGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCg > 2:535441/1‑80 (MQ=255)
gggTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAAcc > 2:535442/1‑80 (MQ=255)
tgtCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAAtt < 1:535408/81‑1 (MQ=255)
tCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGa < 1:535409/81‑1 (MQ=255)
gcgcTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTg < 1:535412/81‑1 (MQ=255)
gcgcTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTg < 2:535410/81‑1 (MQ=255)
gcgcTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTg < 2:535411/81‑1 (MQ=255)
ttCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGttt > 2:535447/1‑80 (MQ=255)
tCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTg < 2:535414/80‑1 (MQ=255)
tCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGa > 1:535448/1‑81 (MQ=255)
tCCACCACGAATACCGGAGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTg < 1:535413/80‑1 (MQ=255)
caccacGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGAtt < 1:535415/81‑1 (MQ=255)
cGAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAg < 1:535416/81‑1 (MQ=255)
gAATACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAgg > 2:886748/1‑81 (MQ=255)
aaTACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGc < 2:535417/81‑1 (MQ=255)
aaTACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGc > 2:535452/1‑81 (MQ=255)
aTACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGcc > 1:535449/1‑81 (MQ=255)
tACCGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCg > 1:535457/1‑81 (MQ=255)
ccGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGc < 2:535418/80‑1 (MQ=255)
cGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCAc > 1:535445/1‑81 (MQ=255)
cGGGGTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCAc > 2:535468/1‑81 (MQ=255)
ggTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGcc < 2:535419/81‑1 (MQ=255)
gTCTGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCca < 2:535420/81‑1 (MQ=255)
tGGACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACAt > 2:535454/1‑81 (MQ=255)
ggACGTTAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATc > 1:535458/1‑81 (MQ=255)
ttAGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACa > 2:535459/1‑81 (MQ=255)
aGCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACAtt > 2:535463/1‑81 (MQ=255)
gCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTc < 2:535421/81‑1 (MQ=255)
gCGAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTc < 2:535422/81‑1 (MQ=255)
gAAAAAAATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAg > 1:535471/1‑81 (MQ=255)
aaaaATACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAgcgc < 1:535423/81‑1 (MQ=255)
|
GCGCGTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGC > NC_000913/2894688‑2894839
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
