Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,397,596 |
A→T |
F67Y (TTT→TAT) |
rng ← |
RNase G |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,397,596 | 0 | A | T | 100.0%
| 67.6
/ NA
| 20 | F67Y (TTT→TAT) | rng | RNase G |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (13/7); total (13/7) |
GTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTG > NC_000913/3397530‑3397670
|
gTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGATACGCGGCTTTATcc < 1:598977/81‑1 (MQ=255)
gTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGATACGCGGCTTTATcc < 1:598976/81‑1 (MQ=255)
aTTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGATACGCGGCTTTATCCAGcc > 2:599005/1‑81 (MQ=255)
ttttGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGATACGCGGCTTTATCCAGCCCAata > 1:598996/1‑81 (MQ=255)
ttttGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGATACGCGGCTTTATCCAGCCCAata > 2:598993/1‑81 (MQ=255)
tGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGATACGCGGCTTTATCCAGCCCAATATc > 1:598994/1‑80 (MQ=255)
cACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGATACGCGGCTTTATCCAGCCCAATATCTACAAAAg > 2:598998/1‑81 (MQ=255)
ccGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGATACGCAGCTTTATCCAGCCCAATATCTACAAAAgccg < 2:598978/81‑1 (MQ=255)
acacaTTCGGTGTGCGGCATGATGTCGGATGCATGAAGATACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGc < 1:598979/81‑1 (MQ=255)
acaTTCGGTGTGCGGCATGATGTCGGATGCATGAAGATACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCAt < 1:598980/81‑1 (MQ=255)
aTTCGGTGTGCGGCATGATGTCGGATGCATGAAGATACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATAc > 1:599008/1‑81 (MQ=255)
aTTCGGTGTGCGGCATGATGTCGGATGCATGAAGATACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATAc > 1:598997/1‑81 (MQ=255)
ttCGGTGTGCGGCATGATGTCGGATGCATGAAGATACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATAcc > 1:599000/1‑81 (MQ=255)
cGGTGTGCGGCATGATGTCGGATGCATGAAGATACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCg > 2:599011/1‑81 (MQ=255)
tgCGGCATGATGTCGGATGCATGAAGATACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGt < 1:598981/81‑1 (MQ=255)
ggCATGATGTCGGATGCATGAAGATACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTaca > 1:599016/1‑81 (MQ=255)
gCATGATGTCGGATGCATGAAGATACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTacac > 2:599009/1‑81 (MQ=255)
tgatgTCGGATGCATGAAGATACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGAc < 2:598982/81‑1 (MQ=255)
gTCGGATGCATGAAGATACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTa > 2:599014/1‑80 (MQ=255)
cATGAAGATACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCt > 2:599006/1‑81 (MQ=255)
gaagatACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTg > 1:599010/1‑80 (MQ=255)
|
GTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTG > NC_000913/3397530‑3397670
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
