Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
13 |
33.8 |
2116282 |
98.9% |
2093002 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,770,180 |
T→C |
N369N (AAT→AAC) |
ydiK → |
putative transporter YdiK |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,770,180 | 0 | T | C | 100.0%
| 90.1
/ NA
| 24 | N369N (AAT→AAC) | ydiK | putative transporter YdiK |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (13/11); total (13/11) |
GTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGATTGTTAACCACCGCTAATTGATATTTGCTTGCTCT > NC_000913/1770102‑1770249
|
gtgggtggAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAACaa < 1:340501/81‑1 (MQ=255)
ggAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAACAAGTAAtt > 1:340527/1‑81 (MQ=255)
gaagaaGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAACAAGTAAttt > 2:340537/1‑81 (MQ=255)
agaagTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAACAAGTAATTtct < 2:340502/81‑1 (MQ=255)
gaagTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAACAAGTAATTtct > 2:340528/1‑80 (MQ=255)
agTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAACAAGTAATTTCtcat > 1:340531/1‑81 (MQ=255)
gTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAACAAGTAATTTCtcat > 2:340529/1‑80 (MQ=255)
cgccgACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAACAAGTAATTTCTCATCAggcggc > 2:340536/1‑81 (MQ=255)
cgACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAACAAGTAATTTCTCATCAGGCGGctct < 1:340503/81‑1 (MQ=255)
aCGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAACAAGTAATTTCTCATCAGGCGGCTCTgc > 1:340533/1‑81 (MQ=255)
ccGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAACAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGAtt < 1:340504/81‑1 (MQ=255)
aagaaATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAACAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGATTGtt > 1:340542/1‑80 (MQ=255)
aagaaATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAACAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGATTGTTa < 2:340505/81‑1 (MQ=255)
ttCTCGAAGAACTTGGCGAAATCGAGAAACCGAACAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGATTGTTAaccacc < 2:340506/81‑1 (MQ=255)
gaagaaCTTGGCGAAATCGAGAAACCGAACAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGATTGTTAACCACCGc < 1:340507/78‑1 (MQ=255)
aagaaCTTGGCGAAATCGAGAAACCGAACAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGATTGTTAACCACCGCTAAt < 1:340508/81‑1 (MQ=255)
aCTTGGCGAAATCGAGAAACCGAACAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGATTGTTAACCACCGCTAATTGat < 1:340509/81‑1 (MQ=255)
aCTTGGCGAAATCGAGAAACCGAACAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGATTGTTAACCACCGCTAATTGa > 2:340541/1‑80 (MQ=255)
gAAATCGAGAAACCGAACAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGATTGTTAACCACCGCTAATTGATATttgct > 1:340549/1‑81 (MQ=255)
aaaTCGAGAAACCGAACAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGATTGTTAACCACCGCTAATTGATATttgctt < 1:340510/81‑1 (MQ=255)
tCGAGAAACCGAACAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGATTGTTAACCACCGCTAATTGATATTtgcttgct > 1:340540/1‑81 (MQ=255)
tCGAGAAACCGAACAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGATTGTTAACCACCGCTAATTGATATTtgcttgct < 1:340511/81‑1 (MQ=255)
cGAGAAACCGAACAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGATTGTTAACCACCGCTAATTGATATTTGCTTGctc > 1:340546/1‑81 (MQ=255)
gagaAACCGAACAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGATTGTTAACCACCGCTAATTGATATTTGCTTGctct > 1:340548/1‑81 (MQ=255)
|
GTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGGCGGCTCTGCCGCCTGATTGTTAACCACCGCTAATTGATATTTGCTTGCTCT > NC_000913/1770102‑1770249
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
