mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| JC | 168,071 | +AGAA | coding (588/2244 nt) | fhuA → | ferrichrome outer membrane transporter/phage receptor |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| MC JC | 389,707 | Δ10,497 bp | [hemB]–[ddlA] | [hemB], yaiT, insF‑2, insE‑2, yaiT, iprA, ampH, sbmA, yaiW, yaiY, yaiZ, [ddlA] | |
| RA | 451,411 | C→T | W67* (TGG→TAG) | cyoA ← | cytochrome bo3 ubiquinol oxidase subunit 2 |
| RA | 1,184,972 | T→A | Q208L (CAG→CTG) | potA ← | spermidine preferential ABC transporter ATP binding subunit |
| RA | 1,770,180 | T→C | N369N (AAT→AAC) | ydiK → | putative transporter YdiK |
| JC JC | 2,737,118 | IS1 (+) +8 bp | intergenic (+235/‑29) | bamD → / → raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor |
| RA | 2,819,133 | G→A | T5I (ACT→ATT) | csrA ← | carbon storage regulator |
| JC JC | 3,291,610 | IS3 (–) +5 bp :: +T | coding (270‑274/1092 nt) | yraK → | putative fimbrial adhesin YraK |
| RA | 3,471,736 | A→T | F593L (TTT→TTA) | fusA ← | elongation factor G |
| MC JC | 3,917,504 | Δ28 bp | coding (735‑762/864 nt) | atpG ← | ATP synthase F1 complex subunit gamma |
| RA | 3,968,005 | (A)7→6 | coding (90/1104 nt) | rfe → | UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase |
| RA | 4,182,820 | C→T | H526Y (CAC→TAC) | rpoB → | RNA polymerase subunit beta |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423722–3424234 | 3424591–3424238 | 5–870 | 7 [6] | [6] 7 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 2 (0.060) | 15 (0.520) | 14/128 | 1.0 | 92.0% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 1 (0.030) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 2 (0.060) | 29 (1.010) | 25/128 | 0.2 | 95.7% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 1 (0.030) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||