Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,073,292 |
C→A |
V134F (GTT→TTT) |
epd ← |
D‑erythrose‑4‑phosphate dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,073,292 | 0 | C | A | 100.0%
| 173.4
/ NA
| 47 | V134F (GTT→TTT) | epd | D‑erythrose‑4‑phosphate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (24/23); total (24/23) |
AATTCGTGGTACAGGAAGCGTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAACGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGCCCCGGCGGCAATATGCGCTTCGCCAT > NC_000913/3073217‑3073369
|
aaTTCGTGGTACAGGAAGCGTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTcg > 2:572532/1‑81 (MQ=255)
aTTCGTGGTACAGGAAGCGTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTcgc < 1:572473/81‑1 (MQ=255)
aTTCGTGGTACAGGAAGCGTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTcgc < 2:572472/81‑1 (MQ=255)
ttCGTGGTACAGGAAGCGTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTcgcg < 1:572474/81‑1 (MQ=255)
gTGGTACAGGAAGCGTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTc > 1:572529/1‑80 (MQ=255)
tGGTACAGGAAGCGTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTc > 1:572550/1‑79 (MQ=255)
cAGGAAGCGTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATc < 1:572475/80‑1 (MQ=255)
cAGGAAGCGTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCg > 2:572525/1‑81 (MQ=255)
aGGAAGCGTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGt > 1:572534/1‑81 (MQ=255)
gAAGCGTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTa > 2:572522/1‑81 (MQ=255)
gAAGCGTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTa > 1:572521/1‑81 (MQ=255)
aaGCGTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTAc > 1:572552/1‑81 (MQ=255)
aGCGTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACt < 1:572476/81‑1 (MQ=255)
gTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGc > 1:572558/1‑80 (MQ=255)
gTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGc > 2:572537/1‑80 (MQ=255)
ttAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCa < 2:572477/81‑1 (MQ=255)
gAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGa > 1:572548/1‑81 (MQ=255)
aaaCGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGAt > 1:572526/1‑81 (MQ=255)
aaaCGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGAt < 1:572478/81‑1 (MQ=255)
aaaCGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGAt > 2:572524/1‑81 (MQ=255)
aaCGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGAtg > 2:572531/1‑81 (MQ=255)
aCGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGAtgt > 2:572549/1‑81 (MQ=255)
cGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGAtgtg < 2:572479/81‑1 (MQ=255)
aTGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGaa < 2:572480/81‑1 (MQ=255)
gCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGaa > 1:572539/1‑79 (MQ=255)
ggTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAaga < 1:572482/81‑1 (MQ=255)
ggTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAaga < 2:572481/81‑1 (MQ=255)
gtgtTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAagag < 2:572483/81‑1 (MQ=255)
ttCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCAc < 1:572484/81‑1 (MQ=255)
gCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACtttt < 2:572485/81‑1 (MQ=255)
gCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACtttt > 2:572533/1‑81 (MQ=255)
gCACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACtttt < 1:572486/81‑1 (MQ=255)
cACGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACttttt < 1:572487/81‑1 (MQ=255)
aCGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACtttttt < 1:572488/81‑1 (MQ=255)
cGAAGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTg < 1:572489/81‑1 (MQ=255)
aGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGcc < 2:572490/81‑1 (MQ=255)
aGTTGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGcc < 2:572491/81‑1 (MQ=255)
ttGATCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGcccc > 2:572555/1‑81 (MQ=255)
aTCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGCCCcgg < 1:572492/80‑1 (MQ=255)
tCCTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGCCCcggcg < 2:572493/81‑1 (MQ=255)
ccTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGCCCcggcgg > 2:572559/1‑81 (MQ=255)
ccTGATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGCCCcggcgg > 1:572564/1‑81 (MQ=255)
gATTGACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGCCCCGGCGGCaa > 2:572554/1‑81 (MQ=255)
gACGCCGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGCCCCGGCGGCAATATg > 2:572562/1‑81 (MQ=255)
ccGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGCCCCGGCGGCAATATGCGCt < 1:572494/81‑1 (MQ=255)
cGTAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGCCCCGGCGGCAATATGCGCtt > 1:572536/1‑81 (MQ=255)
tAAACAAAGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGCCCCGGCGGCAATATGCGCTTCg > 2:572556/1‑81 (MQ=255)
aacaaaGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGCCCCGGCGGCAATATGCGCTTCGcc < 2:572496/81‑1 (MQ=255)
aacaaaGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGCCCCGGCGGCAATATGCGCTTCGcc < 2:572495/81‑1 (MQ=255)
aacaaaGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGCCCCGGCGGCAATATGCGCTTCGc > 1:572545/1‑80 (MQ=255)
caaaGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGCCCCGGCGGCAATATGCGCTTCGCCAt < 1:572497/81‑1 (MQ=255)
|
AATTCGTGGTACAGGAAGCGTTAGAAACGATGCGGTGTTCCGCACGAAGTTGATCCTGATTGACGCCGTAAACAACGGTCGCGTCGAGATCGTTACTGCCAGGATGTGAAAAGAGCACTTTTTTGGCCCCGGCGGCAATATGCGCTTCGCCAT > NC_000913/3073217‑3073369
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
