Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A21 F99 I1 R1 19 55.7 1970560 92.7% 1826709 142.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913_3_pae_tpiA 2,679,525 G→T A1074D (GCT→GAT)  yphG ← DUF4380 domain‑containing TPR repeat protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913_3_pae_tpiA2,679,5250GT96.6% 170.9 / NA 59A1074D (GCT→GAT) yphGDUF4380 domain‑containing TPR repeat protein
Reads supporting (aligned to +/- strand):  ref base G (0/2);  new base T (31/26);  total (31/28)
Fisher's exact test for biased strand distribution p-value = 2.21e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAAGCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGCCATACAGCGACAACAAGTCAGGT  >  NC_000913_3_pae_tpiA/2679382‑2679668
                                                                                                                                               |                                                                                                                                               
ggTTTTTATTGACGAGGGCTTATTCTAATTATTTTGTGATGAGCGGGGGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGa                                                                                                                                            <  2:586661/149‑1 (MQ=255)
ggTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGa                                                                                                                                            <  1:231143/149‑1 (MQ=255)
        ttaACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGc                                                                                                                                    >  2:539764/1‑149 (MQ=255)
               cGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAAt                                                                                                                             >  2:734444/1‑149 (MQ=255)
                  cgtATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCGGCCCACATATTACAGATGATAACGCTTATCCTCCTCTTTAATAAAAAAGAGACATAACGGTGGTGACTAATGCCGCTTTCGGCCAATCCAGACTCATAGCCGTCCATTCa                                                                                                                          >  2:43/3‑149 (MQ=255)
                        cTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGa                                                                                                                    <  1:66442/149‑1 (MQ=255)
                        cTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGa                                                                                                                    >  1:3747/1‑149 (MQ=255)
                                tttGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTc                                                                                                            >  1:358057/1‑149 (MQ=255)
                                     gatgtGTGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATAtt                                                                                                       <  1:426810/149‑1 (MQ=255)
                                     gatgaGCGGCAGGGCGTGCCGCTCATATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATAtt                                                                                                       <  2:916353/149‑1 (MQ=255)
                                     gatgaGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGGTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATAtt                                                                                                       >  2:851289/1‑149 (MQ=255)
                                       tgaGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCTCCGTCAATTCAGCGCGAGCAGCATCATATTga                                                                                                     >  1:952805/1‑148 (MQ=255)
                                       tgaGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGCGCCGACTCATATTgc                                                                                                     >  1:752573/1‑149 (MQ=255)
                                        gaGCGGCAGCGCGTGCCGCTCAAATGTTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGCGCAGCATCATATTgcg                                                                                                    >  2:167287/1‑149 (MQ=255)
                                          gCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTCAAACTCTAATGCATCACGCGTCTGAACTATTCCGCTTTCGGCCTATCTTTATGTATCGCCGGCAATTCAGGGCGAGCATAGTCATATTGCGCa                                                                                                  >  1:481519/1‑149 (MQ=255)
                                          gCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCa                                                                                                  >  1:175295/1‑149 (MQ=255)
                                                 cggttgctgcGCAAATATTAGAGTTAATAGGATTTAGTGAACGCTGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGTGCCGACTCATATTGCGCAACCTccc                                                                                           <  2:111592/145‑1 (MQ=255)
                                                 cgcgTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTccc                                                                                           <  2:414811/149‑1 (MQ=255)
                                                      gCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTGCATTCAGCGCGGGCAGACTCGTATTGCGGAGCGTCCCCGAGt                                                                                      >  1:72207/1‑149 (MQ=255)
                                                      gCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCCAGCAGACCCCTATTGCGCAACCTCCCCGAgc                                                                                      >  1:144697/1‑148 (MQ=255)
                                                        cGCTCAAATATTACAATTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAGTACCGCTTTCGGCCAATCCGAATTAATCGCCGTCAATTAAGCCCGAGCAGACTCATATTGATCACCATCCCCGacgcc                                                                                    >  2:152619/1‑145 (MQ=255)
                                                         gatCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTccc                                                                                   <  1:550265/147‑1 (MQ=255)
                                                         gCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTccc                                                                                   >  2:729143/1‑149 (MQ=255)
                                                         gCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGAGGCCTTCGGCCAATCCGGCTTATTCGGCACCAAGGCATCCAGAACAGCCCCAAATTGCGCAACCTCCCCGAGTccc                                                                                   >  1:718939/1‑149 (MQ=255)
                                                             aaaTATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGa                                                                                                               <  2:544300/117‑1 (MQ=255)
                                                             aaaTATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGa                                                                                                               >  1:544300/1‑117 (MQ=255)
                                                                  ttACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGcc                                                                          >  1:937042/1‑149 (MQ=255)
                                                                  ttACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGcc                                                                          <  2:3747/149‑1 (MQ=255)
                                                                   tgcAGTTAATAGGGTTTATTTAACGGAGATAAAAATAAAAGGCATCACGGTGTTGAATAATGCCGCTTTCGGCCAATTCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGTGCAACCTTCCCGAGTCCCGCGGACGCCa                                                                         <  2:773080/147‑1 (MQ=255)
                                                                   tACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCa                                                                         <  1:789961/149‑1 (MQ=255)
                                                                   tACAGTGAATGGGGTTTAGTGAACGCGGTTAAAAATAAACGGCATCACTGTGGTGAATAATTCCGCTTTCTGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCa                                                                         <  2:717905/149‑1 (MQ=255)
                                                                     cAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGc                                                                       >  2:718557/1‑149 (MQ=255)
                                                                        ttAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATc                                                                    >  1:777903/1‑149 (MQ=255)
                                                                          aaTAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGc                                                                  >  1:788940/1‑149 (MQ=255)
                                                                                 tttggggAACGCGGTTAAAAATAAAGTGCAGCACGGGGGTGAATAATGCTGTTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGTAACCTCCCCGAGTCCCGTGGACGCCAGCATCGCCACCATc                                                           <  2:242460/143‑1 (MQ=255)
                                                                                  ttAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCa                                                          <  1:136213/149‑1 (MQ=255)
                                                                                     gTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGc                                                       <  1:391613/149‑1 (MQ=255)
                                                                                      tGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGGTTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATAGCGCAACCTCCCCGAGTCCCGAGCAGGCCAGCCTCGCCACCGTCAGGCa                                                      >  2:230391/1‑149 (MQ=255)
                                                                                            cagaaaaaaaaaaaaGGCATCACGGGGATGAAAAAAGCCGCCTCCGGCCAATCCGAAAAAATCCCCGTCAATTCAACGCGAGCAGACTCACATCGCGCAACCTCCCCGAGTCCCGCCGACGCCAGCATCGCCACCATCAGGCATTTTTc                                                <  2:30033/144‑1 (MQ=255)
                                                                                                     aataaaGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTAtgctg                                       >  1:984143/4‑149 (MQ=255)
                                                                                                      tAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTAtgctgc                                      >  2:734059/1‑149 (MQ=255)
                                                                                                            gCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCtgttgt                                <  1:58928/149‑1 (MQ=255)
                                                                                                              aTCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCCTTTTTCTTTCTGCTCCTGTTGTaa                              >  2:872360/1‑149 (MQ=255)
                                                                                                              aTCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTaa                              >  1:905823/1‑149 (MQ=255)
                                                                                                                   ggtggtGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGc                         <  1:310235/149‑1 (MQ=255)
                                                                                                                   ggtggtGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGc                         <  1:951137/149‑1 (MQ=255)
                                                                                                                       gtgAATAATACCGCTTTCAGCCAATCCGGATAAATCGCCGTCAATTCAGCGCGAGCAAACTCATATTGCGCAACCTCCCCGAGTCCAGCGGACGCCAGCATCACCACCATCAGACATCTTTCTTTATGCTGCTGTTGTGACTAGCCATa                     >  2:873585/1‑149 (MQ=255)
                                                                                                                        tgAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGCCATAc                    >  1:446198/1‑149 (MQ=255)
                                                                                                                         gAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGCCATACa                   <  1:430583/149‑1 (MQ=255)
                                                                                                                              atGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGCCATACAGCGac              <  2:358057/149‑1 (MQ=255)
                                                                                                                               tGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGCCATACAGCGaca             >  2:421607/1‑149 (MQ=255)
                                                                                                                                ggcGCTTTCGGGTAATCCGTATTAATCGCTGTCAATTCAGCGCGGAGAGTCTCATATTCCGCGATCTCCCCGAGTCCCGCGGACGCCAGTCTAGCCACCATCCGACATTTTTCTTTATGTTTCTTTTGTAAATCGCCACACAGCGccaa            <  2:689410/147‑1 (MQ=255)
                                                                                                                                  cGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACTATCAGGCATTTTTCTTTATGCTCCTGTTGTAAATCGCCATACACCGacaaca          >  2:724942/1‑149 (MQ=255)
                                                                                                                                   gcgtgcGGCGATGCCGGATTAATCGCGGTCAATTGAGCGCGAGCAGACTCATATTGCGCATCCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCAGCAGGCATGTTTCTTTATGCTGCTGTTGTAAATCGCCATACAGCGAcaacaa         <  2:648503/144‑1 (MQ=255)
                                                                                                                                   gccttCGGCCAATCTGGCTTACTCACCGCAACTTAAGCGCGGGCTGTCTCATCTTGTGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGCCATACAGCGAcaacaa         <  1:205263/146‑1 (MQ=255)
                                                                                                                                   gCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGCCATACAGCGAcaacaa         <  1:215237/149‑1 (MQ=255)
                                                                                                                                     tttCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGCCATACAGCGACAACAAGt       <  2:481519/149‑1 (MQ=255)
                                                                                                                                        cGGCCAAGCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGCCATACAGCGACAACAAGTCAg    <  1:548507/149‑1 (MQ=255)
                                                                                                                                          gCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGGCGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGCCATACAGCGACACCAAGTCAGGt  >  2:569966/1‑149 (MQ=255)
                                                                                                                                               |                                                                                                                                               
GGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAAGCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGCCATACAGCGACAACAAGTCAGGT  >  NC_000913_3_pae_tpiA/2679382‑2679668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A