Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F19 I0 R1
|
32 |
84.8 |
2851444 |
95.0% |
2708871 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913_3_pae_tpiA |
2,106,741 |
A→T |
100% |
S162S (TCT→TCA) |
wbbH ← |
O‑antigen polymerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913_3_pae_tpiA | 2,106,741 | 0 | A | T | 100.0%
| 311.4
/ NA
| 92 | S162S (TCT→TCA) | wbbH | O‑antigen polymerase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (46/46); total (46/46) |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
CTCTATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTAG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTTAACCTCA > NC_000913_3_pae_tpiA/2106596‑2106886
|
ctctATTAACACCTACGATGAATGCATAAGAGATGATAACAATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑Ac > 2:1224271/1‑149 (MQ=255)
ctctATTAACACCTACGATGAAAGTATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑Ac > 1:739537/1‑149 (MQ=255)
tctATTAACACCTACGATGAATGCATAAGAGATGATAAGCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑Acc > 2:1017269/1‑149 (MQ=255)
ggtATTAACACCTGCGATGAATGCATAAGCGATGATACCCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACACGTAAAGTAAATGTTTTACTTACNTTTGTATTAGTAAATTTTTTTG‑Acc > 1:931415/3‑149 (MQ=255)
tATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ATCaa > 2:1388555/1‑149 (MQ=255)
tcacaTACGAGGAATGCATAAGAGATGATAACCATAAAGTCAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAATACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCaaataaa < 2:326009/148‑1 (MQ=255)
acacCTACGATGAATGCAGAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCATTATATTAGTAAATTTTTTTG‑ACCaaataaa < 2:526713/149‑1 (MQ=255)
acCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAaataaata > 1:865330/1‑149 (MQ=255)
ccTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAataaataa < 1:38443/149‑1 (MQ=255)
cTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACTAATtaaataaa > 2:1109230/1‑149 (MQ=255)
cTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAAtaaataaa > 1:1414434/1‑149 (MQ=255)
tACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAg > 2:255160/1‑149 (MQ=255)
tACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAg > 2:1212616/1‑149 (MQ=255)
tACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAg < 2:903963/149‑1 (MQ=255)
aaaaGAAATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTa < 2:983006/147‑1 (MQ=255)
aTAAGAGATGTTAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTATATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATCAATAAAGCAAAAGTAGTTa < 2:1089229/149‑1 (MQ=255)
aTAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTGAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTa > 2:909073/1‑149 (MQ=255)
aTAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTa < 2:1089334/149‑1 (MQ=255)
aTAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTa < 2:807551/149‑1 (MQ=255)
aTAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTAATTACCTCTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTa > 1:970140/1‑149 (MQ=255)
aTAAGAGACGATAACCATAAAGACAATTTCCTTATCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAGAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTa < 1:662429/149‑1 (MQ=255)
aggaatgatAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGaa < 2:91036/145‑1 (MQ=255)
atgatAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATAAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGAt > 2:1394348/1‑149 (MQ=255)
tgatAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGAtt < 2:1145772/149‑1 (MQ=255)
gatAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTg < 1:1002945/149‑1 (MQ=255)
gatAACCATAAAGACAATTTGCTTAACAGTGTTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAGTAAATAAAGCAAAAGTAGTTAGAATGATTg > 1:1048468/1‑149 (MQ=255)
aaacATAAAGACAATTTTCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCt < 1:497091/146‑1 (MQ=255)
ccATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGAAGTTAGAATGATTGGCTga > 2:553701/1‑148 (MQ=255)
aTAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAATTAGTTAGAATGATTGGCTGCAt < 1:723737/149‑1 (MQ=255)
aTAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGGGGTGGTGTGTG‑ACCAAATAAATAAAGCAATAGTAGTTAGAATGATGGGCTGcgt > 1:402065/1‑147 (MQ=255)
aTAAAGACAATTTGATTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTACACGTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCAt < 1:1335071/149‑1 (MQ=255)
aTAAAGACAAATTGCCTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTCCAATTGTATTAGTAAATTTTTTTG‑ACCAAAAAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCAt < 1:1335248/149‑1 (MQ=255)
aTAAAGAAAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCAt < 1:356300/149‑1 (MQ=255)
tAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCGAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATg > 1:266227/1‑149 (MQ=255)
gACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATg > 2:1147440/1‑149 (MQ=255)
gACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAACAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGAATGTATg > 2:484358/1‑149 (MQ=255)
aaTTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGCATCGCTGCATGTATGCTg > 2:1269219/1‑149 (MQ=255)
ttcccAGTATTCAGTATAATTGCACAGATGCATCCAATAAAAACAAGTAAAGTAAATGGTTTACTTACCCTTGTATTAGTAAATTTTTTTG‑ACCACATAAATCAAGCACAAGTAGTTAGAATGATTGGCTGCATGTATGCTAAGAAAtc > 2:1145232/4‑148 (MQ=255)
gTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGa < 1:66004/149‑1 (MQ=255)
tgttCAGTATAATTGCAAAAATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAt < 2:854853/147‑1 (MQ=255)
tATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAt > 1:1335987/1‑149 (MQ=255)
tATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAt > 1:1223259/1‑149 (MQ=255)
gaatCATTAGAACTGAAAAGATTAATACAAAAAAAAACATAAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAt < 2:832142/146‑1 (MQ=255)
aTTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAtg < 2:598517/149‑1 (MQ=255)
ttCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGAATTAAATCAA‑AAATCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAtgt > 1:1032829/1‑149 (MQ=255)
ttCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAACTCAATAAACCAAAAGTAGTTATAATGATTGGCTACATTTATGCTGAGAAATTCCTTGAtgt > 2:592956/1‑149 (MQ=255)
ttCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAtgt > 2:199884/1‑149 (MQ=255)
ttCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAtgt > 1:263992/1‑149 (MQ=255)
tataATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCtt < 1:174524/149‑1 (MQ=255)
taATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCa < 2:1414434/149‑1 (MQ=255)
taATTCCAAATATTAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATTATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCa < 2:324956/149‑1 (MQ=255)
aTTGCAAAGATTAATAGAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTCTTTTG‑ACCAAATAACTAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAAc < 1:464289/149‑1 (MQ=255)
cAAAGATGAATACAATAAAAACAAGTAAACTAAATGTTTACCTTACCGTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGTTGTGTCTTCAACATCa < 2:931415/149‑1 (MQ=255)
aaaGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAg > 1:1173499/1‑149 (MQ=255)
aaGATCAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGc < 1:495028/149‑1 (MQ=255)
gATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAAAATCTGCAt > 2:91706/1‑149 (MQ=255)
gATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATCGTGGGCATGAAGGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCAt > 1:472037/1‑149 (MQ=255)
aTGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCAtc > 2:63493/1‑149 (MQ=255)
gAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCAtctc > 2:1075169/1‑149 (MQ=255)
gAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGCTTCCAGGTGTGCGGAGAAATTTCTTGATGTGTCTTCAACATCAGCGtctc > 1:108845/1‑149 (MQ=255)
aaTACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATctct < 2:865330/149‑1 (MQ=255)
aTACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCtt > 2:1112973/1‑149 (MQ=255)
tACAATAAAAACAAGTAAAGTAGATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTa < 2:1047103/149‑1 (MQ=255)
cAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATc > 1:1133259/1‑149 (MQ=255)
aaTAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTT‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGAATCTCTTATCa > 2:754759/1‑149 (MQ=255)
aaaaCAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAAtt < 1:1125105/149‑1 (MQ=255)
gtaaagtaaaTGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAg < 1:909073/149‑1 (MQ=255)
gtaaagtaaaTGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAg > 1:86332/1‑149 (MQ=255)
gtaaagtaaaTGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAg > 1:691907/1‑149 (MQ=255)
agtacaTGTTTGACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCtaa < 2:861684/149‑1 (MQ=255)
agtaaaTCTTTTACTGACCATTGTATTAGTCACTTTTTTTG‑ACCAGAGAAAGAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTACGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCtaa < 1:554473/149‑1 (MQ=255)
gtaaaTGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCtaag > 1:584352/1‑149 (MQ=255)
aTGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGTGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCcaagtaag < 1:1017269/149‑1 (MQ=255)
aTGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGATTTTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCtaagtaag < 1:1339841/149‑1 (MQ=255)
tGTTTTACTTACCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGc > 2:562679/1‑149 (MQ=255)
acttacCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTcc < 1:1003211/149‑1 (MQ=255)
ttacCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTa < 2:21662/143‑1 (MQ=255)
ttacCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTa > 1:21662/1‑143 (MQ=255)
tacCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAAGAAATCAAAAGTAGTTATAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGa < 2:725771/149‑1 (MQ=255)
acCTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATCTAGCTAAGTAAGCTAGTCCCGaa < 1:1224271/149‑1 (MQ=255)
cTTTGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACt > 1:1029843/1‑149 (MQ=255)
tttGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTg > 1:215064/1‑149 (MQ=255)
ttGTATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTgg < 2:643869/149‑1 (MQ=255)
tATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAATCTAGTCCCGAACTGGTAg > 1:1169434/1‑149 (MQ=255)
tATTAGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAg > 2:916357/1‑149 (MQ=255)
ttAGTAAATTTTTTTG‑ACCACATAAATAAAGCAAAAGTAGTTAGAATGATTGGTCCTGCGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAATTGGTAGtt < 1:1031859/149‑1 (MQ=255)
tAGTAAATTTTTCTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTa < 1:550492/149‑1 (MQ=255)
aGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGGATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCATCATTTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTAc < 2:440925/149‑1 (MQ=255)
aGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTGACAGGTGGAAGTAAGCTAGTCCCGAACTGGTAGTTAc < 1:1409853/149‑1 (MQ=255)
aGTAAATTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTAc < 1:445266/149‑1 (MQ=255)
aaTTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGCACTGGTAGTTACtgac > 1:608704/1‑146 (MQ=255)
aaTTTTTTTG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTTaa < 1:199884/149‑1 (MQ=255)
ttttG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTTAACCTCa < 1:249140/149‑1 (MQ=255)
|
CTCTATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTAG‑ACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTTAACCTCA > NC_000913_3_pae_tpiA/2106596‑2106886
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
