Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A23 F6 I1 R1
|
16 |
59.9 |
2107472 |
93.9% |
1978916 |
143.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913_3_pae_tpiA |
2,106,741 |
A→T |
S162S (TCT→TCA) |
wbbH ← |
O‑antigen polymerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913_3_pae_tpiA | 2,106,741 | 0 | A | T | 98.5%
| 218.2
/ ‑3.1
| 67 | coding (486/1167 nt) | wbbH | O‑antigen polymerase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (26/40); minor base . (1/0); total (27/40) |
| Fisher's exact test for biased strand distribution p-value = 4.03e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 |
TATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTAGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTTAACCTC > NC_000913_3_pae_tpiA/2106599‑2106885
|
tATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCaa > 1:212312/1‑149 (MQ=255)
aTTAACAACTACGATTAATGCAGCAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAACATGAATAAAATAACATGATGTTAAGTACCTTTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCaaa < 2:222415/149‑1 (MQ=255)
ttAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCaaat < 1:407783/149‑1 (MQ=255)
acCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCGGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAaataaa‑ta > 1:562379/1‑149 (MQ=255)
ccTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAataaa‑taa < 1:125284/149‑1 (MQ=255)
cTACGATGAATGCAGAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAAtaaa‑taaa < 2:258381/149‑1 (MQ=255)
tACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAg < 1:48027/149‑1 (MQ=255)
tACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAg > 1:757337/1‑149 (MQ=255)
aCGATGAATGCATAAGAGATGATAACCATAAAGACAATCTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TCAAGc > 1:890463/1‑149 (MQ=255)
gATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCaa > 2:596940/1‑149 (MQ=255)
tgaatgaaTAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACATCCATTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCaaaa < 2:851901/149‑1 (MQ=255)
tGCATAAGAGATGCTAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAagtag < 1:661385/149‑1 (MQ=255)
cATAAGAGATGTAAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGtt < 2:920463/149‑1 (MQ=255)
cATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGtt < 2:338101/149‑1 (MQ=255)
cATAAGAAATGATAACCATAAAGAAAAGTTGCTTACCAGTATTCAGTATAATTGAAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGtt < 2:507438/149‑1 (MQ=255)
atgaaatgatACCAATAAAAACAATTTCCTTACCTGTATTAAGTATAATTTCAAAGATAAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGa < 2:295791/144‑1 (MQ=255)
aaGAGATGATAACCATAAAGACAATTTTCTTATCCGTATTCAGTATAATGGCAAACATAAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGa < 1:416308/149‑1 (MQ=255)
aaGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCACATAAA‑TAAAGCAAAACTAGCTAGa > 1:500844/1‑149 (MQ=255)
atgatAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAAAAAGTAAAGTAAATGTTTTACTAACCTTTGTATTAGTAAATTTTTTTGTCCAAATAAC‑TAAATCAAAAGTATTTAGaagaat > 1:301635/1‑145 (MQ=255)
tgatAACCATAAAGACAAGTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGAtt < 1:170420/149‑1 (MQ=255)
atAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTgg > 1:848863/1‑149 (MQ=255)
aaCCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCt > 1:299685/1‑149 (MQ=255)
ccATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGAAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGc < 2:596965/149‑1 (MQ=255)
cATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCa < 1:368410/149‑1 (MQ=255)
aTAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCAt > 2:922202/1‑149 (MQ=255)
aTAAAGACAATATGCTTACCAGTATTAAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCAt < 2:228909/149‑1 (MQ=255)
tAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATg > 2:552362/1‑149 (MQ=255)
aaGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTCGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTACAATGATTGGCTGCATGTa > 2:1019913/1‑149 (MQ=255)
aGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTAt < 1:858600/149‑1 (MQ=255)
aTTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTga < 1:86171/149‑1 (MQ=255)
gCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAGTAAAAACAAGTCAAGAAAATGTATTACTTACCTTTGTATTAGTAAATCTTTTTGACCAAATAAA‑CAAAGCAAAAGTAGTTAGAATGCTTGGCTGCATGTATGCTGTGaaa > 1:889604/1‑149 (MQ=255)
cTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAAt < 2:192506/149‑1 (MQ=255)
tACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAAttt < 1:664230/149‑1 (MQ=255)
ccAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTTTTTTATTTAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTCCATGTATGCTGTAAAATTTCt > 2:329541/1‑149 (MQ=255)
ccAGTATTCAGAATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATAATGTTCTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTGTGCTGAGAAATTTCt < 1:770874/149‑1 (MQ=255)
cAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCtt < 2:896802/149‑1 (MQ=255)
tATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAt < 1:703677/149‑1 (MQ=255)
aGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTc > 1:968202/1‑149 (MQ=255)
tataATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCtt > 2:329164/1‑149 (MQ=255)
aTTGCAAAGATGAAGACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAAc < 2:871368/149‑1 (MQ=255)
aaaGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTT‑GACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGc > 2:781865/1‑149 (MQ=255)
aTACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCtt > 1:163059/1‑149 (MQ=255)
tACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTa > 1:547713/1‑149 (MQ=255)
aaTAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCa > 1:359339/1‑149 (MQ=255)
aaTAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTATTATCa > 2:392619/1‑149 (MQ=255)
aTAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAACTTACTTAATGTGTCTTCCACATCACCATATGTTATCaa > 2:841166/1‑149 (MQ=255)
tAAAAGGAAGTAAAGAAAATGTGGTACTTACCTTTATATTAGTAAATTTTTTTGACCATACAAA‑TAAAGCAAAAGTAGTTATAATGATTCGCTGCATGTATTCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATGaaa < 2:417651/149‑1 (MQ=255)
tAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCaaa < 2:542145/149‑1 (MQ=255)
tAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCaaa < 1:792417/149‑1 (MQ=255)
cAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCata < 1:108968/149‑1 (MQ=255)
agtaaagtaaATGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCAtata < 2:156495/149‑1 (MQ=255)
aaagtacaTGTTTTAATTACCTTTGTATTAGTAAATTTTTTTGGGCGACCAAACCGGAGC‑TAGGTTTTGAGAATAATTGGCTGCACTCATGCTGTGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCt < 2:748800/149‑1 (MQ=255)
gtaaaTGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCta > 1:229527/1‑147 (MQ=255)
gtaaaTGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCta < 2:229527/147‑1 (MQ=255)
tGTTTTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGc < 1:670704/149‑1 (MQ=255)
ttttACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATCGCTAAATAAGCTa > 2:290003/1‑149 (MQ=255)
tacgtacCTTTGTATTAATAAAGTATTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTCGAATGATTGGCTGGACGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCACATAGCTAAGTCAGCTAGTc < 2:889604/149‑1 (MQ=255)
cattGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGTTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACt < 2:114179/147‑1 (MQ=255)
cTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGc > 1:121701/1‑72 (MQ=255)
cTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGc < 2:121701/72‑1 (MQ=255)
cTTTGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACt < 1:695490/149‑1 (MQ=255)
tGTATTAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGt < 1:714160/149‑1 (MQ=255)
gTATGACTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATATCTAAGTAAGCTAGTCCCGAACTGGTa < 2:528112/149‑1 (MQ=255)
gtAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGCTGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGCACTGGTAttt > 2:277807/2‑149 (MQ=255)
tAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTa < 1:308200/149‑1 (MQ=255)
tAGTAAATTTTTTTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTa < 2:225472/149‑1 (MQ=255)
ttttTGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTTAACCTc > 2:519575/1‑149 (MQ=255)
|
TATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAATTTTTTAGACCAAATAAA‑TAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTTAACCTC > NC_000913_3_pae_tpiA/2106599‑2106885
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
