Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F19 I1 R1
|
16 |
138.8 |
5648518 |
93.3% |
5270067 |
123.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913_3_pae_tpiA |
2,106,741 |
A→T |
S162S (TCT→TCA) |
wbbH ← |
O‑antigen polymerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913_3_pae_tpiA | 2,106,741 | 0 | A | T | 96.9%
| 457.9
/ 2.8
| 130 | S162S (TCT→TCA) | wbbH | O‑antigen polymerase |
| Reads supporting (aligned to +/- strand): ref base A (3/1); new base T (63/62); total (66/64) |
| Fisher's exact test for biased strand distribution p-value = 6.19e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 134 total aligned reads displayed.
TTTACTCTATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTAGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTTAACCTC > NC_000913_3_pae_tpiA/2106592‑2106885
|
tttACTCTATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTa < 1:496815/150‑1 (MQ=255)
aTTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCaaat < 1:401429/150‑1 (MQ=255)
ttAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTATATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCaaata > 1:462132/1‑150 (MQ=255)
ttAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTa < 3:779350/141‑1 (MQ=255)
aaCACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCaaataaa < 2:202709/150‑1 (MQ=255)
acCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAataaataa > 4:868358/1‑150 (MQ=255)
cTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAg > 2:244929/1‑150 (MQ=255)
cTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAg > 3:564015/1‑150 (MQ=255)
tACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGc > 2:146307/1‑150 (MQ=255)
tACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGc > 1:861933/1‑150 (MQ=255)
gATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCaaa < 1:146307/150‑1 (MQ=255)
gATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCaaa < 4:221062/150‑1 (MQ=255)
aTGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCaaaa < 2:861933/150‑1 (MQ=255)
aaTGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATAAAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAagta < 4:235990/150‑1 (MQ=255)
gCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTGACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGtt < 3:876539/150‑1 (MQ=255)
cATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTANTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTa < 1:131526/150‑1 (MQ=255)
gagaTGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATg > 4:9046/1‑150 (MQ=255)
gatgatAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGAt > 2:476093/1‑150 (MQ=255)
tgatAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTg > 2:1570405/1‑150 (MQ=255)
gatAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTgg > 2:1359941/1‑150 (MQ=255)
aCCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGc > 4:627931/1‑150 (MQ=255)
aTAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATg > 1:56206/1‑150 (MQ=255)
aGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATg < 2:1452968/150‑1 (MQ=255)
gACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGc > 4:138737/1‑150 (MQ=255)
cAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTg < 4:311925/150‑1 (MQ=255)
aaTTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTg < 4:467989/149‑1 (MQ=255)
aaTTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTg > 3:467989/1‑149 (MQ=255)
aTTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTgag < 2:56206/150‑1 (MQ=255)
ttACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAAttt < 3:586516/150‑1 (MQ=255)
ccAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCtt > 3:868593/1‑150 (MQ=255)
cAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAagtag > 1:1200310/1‑111 (MQ=255)
cAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAagtag < 2:1200310/111‑1 (MQ=255)
cAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTg > 1:179779/1‑150 (MQ=255)
cAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGATAAGACATTTCtcg > 4:38926/1‑148 (MQ=255)
gTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAt < 4:564015/150‑1 (MQ=255)
gTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAt < 3:138737/150‑1 (MQ=255)
gTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTGTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAt < 1:476093/150‑1 (MQ=255)
tATTCAGTATAATCGCAAAGATGAATACAATAAAATCAATTAAAGTATATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAtg < 3:38926/150‑1 (MQ=255)
ttCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAtgtg > 4:438381/1‑150 (MQ=255)
tCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATgtgt > 3:312686/1‑150 (MQ=255)
aGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAg < 2:343206/94‑1 (MQ=255)
aGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGNTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCt < 3:627931/150‑1 (MQ=255)
taATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCAt < 2:76554/118‑1 (MQ=255)
taATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCAt < 4:23869/118‑1 (MQ=255)
taATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCAt > 1:76554/1‑118 (MQ=255)
taATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCAt > 3:23869/1‑118 (MQ=255)
cAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGGATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAg > 1:746531/1‑150 (MQ=255)
aaaGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAt > 4:934768/1‑133 (MQ=255)
aaaGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAt < 3:934768/133‑1 (MQ=255)
aGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGtt > 2:363654/1‑92 (MQ=255)
aGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGtt < 1:363654/92‑1 (MQ=255)
gATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTAGGCCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGaaa < 4:483590/121‑1 (MQ=255)
gATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTAGGCCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGaaa > 3:483590/1‑121 (MQ=255)
aaaTAAAAACAAGTAAATTAAATGTTTTATTTACCTTTGTATTAGTAAATTTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATc < 4:802683/149‑1 (MQ=255)
aaTAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGaa < 1:1028294/86‑1 (MQ=255)
aaTAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGaa > 2:1028294/1‑86 (MQ=255)
aaTAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCtt > 3:588327/1‑118 (MQ=255)
aaTAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCtt < 4:588327/118‑1 (MQ=255)
aaTAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCaa > 4:545054/1‑150 (MQ=255)
aTAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCa < 2:1639369/129‑1 (MQ=255)
aTAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCa > 1:1639369/1‑129 (MQ=255)
aTAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACAt > 2:894015/1‑133 (MQ=255)
aTAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACAt < 1:894015/133‑1 (MQ=255)
aTAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATaaaa > 1:542/1‑150 (MQ=255)
aTAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCaaa < 1:1570405/150‑1 (MQ=255)
tAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTAt < 3:968767/101‑1 (MQ=255)
tAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAAt < 2:44257/150‑1 (MQ=255)
aaaaaCAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGATCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAAtt < 1:1359941/150‑1 (MQ=255)
aaaaaCAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCaa > 2:662361/1‑128 (MQ=255)
aaaaaCAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCaa < 1:662361/128‑1 (MQ=255)
aaaaCAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTc < 3:868358/150‑1 (MQ=255)
aaaCAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCa > 1:939775/1‑150 (MQ=255)
aCAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCCTGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCata > 3:506580/1‑150 (MQ=255)
agtaaagtaaATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAg < 4:506580/150‑1 (MQ=255)
aagtaaaTGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCAtct < 2:1479465/128‑1 (MQ=255)
aagtaaaTGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCAtct > 1:1479465/1‑128 (MQ=255)
aaTGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCtaagtaag < 1:1163908/150‑1 (MQ=255)
aTGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGc < 3:545054/150‑1 (MQ=255)
ttttACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCAtctc > 1:158131/1‑120 (MQ=255)
ttttACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCAtctc < 2:158131/120‑1 (MQ=255)
ttttACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAg > 1:1492097/1‑150 (MQ=255)
tttACTTACCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGt < 3:456867/150‑1 (MQ=255)
ttacCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGa < 2:217291/150‑1 (MQ=255)
acCTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTgg < 2:727110/62‑1 (MQ=255)
cTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTg > 1:238274/1‑150 (MQ=255)
cTTTGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTg > 3:198073/1‑150 (MQ=255)
ttGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATc < 4:711938/113‑1 (MQ=255)
ttGTATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATc > 3:711938/1‑113 (MQ=255)
tATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATg > 2:749148/1‑66 (MQ=255)
tATTAGTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATg < 1:749148/66‑1 (MQ=255)
gTAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTAt > 2:420075/1‑60 (MQ=255)
tAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTc < 4:281783/72‑1 (MQ=255)
tAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTc > 3:281783/1‑72 (MQ=255)
tAAA‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCa < 4:821986/111‑1 (MQ=255)
aaa‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTTaa < 2:939775/150‑1 (MQ=255)
aaa‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTTaa > 3:66059/1‑150 (MQ=255)
aa‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGCTGTGTCTGCAACATCAGCATCTCTTAt < 1:418956/101‑1 (MQ=255)
aa‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTTAAc < 1:1420249/150‑1 (MQ=255)
aa‑TTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTTAAc > 1:327922/1‑150 (MQ=255)
ttttttGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTTAACCTc < 2:327922/150‑1 (MQ=255)
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TTTACTCTATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTTTACTTACCTTTGTATTAGTAAA‑TTTTTTAGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTTAACCTC > NC_000913_3_pae_tpiA/2106592‑2106885
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
