Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A24 F80 I1 R1
|
18 |
118.6 |
4166156 |
93.9% |
3912020 |
141.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913_3_pae_tpiA |
3,440,923 |
C→T |
G36D (GGC→GAC) |
rpoA ← |
RNA polymerase, alpha subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913_3_pae_tpiA | 3,440,923 | 0 | C | T | 99.3%
| 489.6
/ NA
| 148 | G36D (GGC→GAC) | rpoA | RNA polymerase, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (79/68); minor base G (1/0); total (80/68) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 149 total aligned reads displayed.
AGGTTGAGCAGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGCCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGG > NC_000913_3_pae_tpiA/3440776‑3441062
|
gTTGAGCAGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAATACACCTTCGATCTCAACTTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCaa > 1:2048660/1‑149 (MQ=255)
gAGCAGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGc < 1:1198552/149‑1 (MQ=255)
gCAGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCa > 1:80144/1‑149 (MQ=255)
gCAGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCa < 1:1442744/149‑1 (MQ=255)
aGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACg > 2:2024727/1‑149 (MQ=255)
aGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGGCAAAGcaccg > 2:708048/1‑145 (MQ=255)
ggATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGc < 1:1953224/149‑1 (MQ=255)
ggATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGc > 2:1341925/1‑149 (MQ=255)
tCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTaa > 2:83378/1‑149 (MQ=255)
tCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTACTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTaa < 1:480912/149‑1 (MQ=255)
cAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAg < 1:1096380/149‑1 (MQ=255)
aGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAgg < 1:2024727/149‑1 (MQ=255)
atatCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTc < 1:1513888/149‑1 (MQ=255)
ttCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAg > 2:1662857/1‑140 (MQ=255)
ttCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAg < 1:1662857/140‑1 (MQ=255)
ttCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAggg > 2:1844825/1‑149 (MQ=255)
cTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAACGCCCAAGGGTcc > 2:321955/1‑148 (MQ=255)
aaCGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTAACCt > 2:87359/1‑149 (MQ=255)
cGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTg > 1:228051/1‑149 (MQ=255)
gCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTgg < 2:864032/149‑1 (MQ=255)
ccgtcttTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGgc < 1:1127578/146‑1 (MQ=255)
cttcttTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCAc < 1:846316/120‑1 (MQ=255)
cttcttTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCAc > 2:846316/1‑120 (MQ=255)
tttGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAgg > 2:111273/1‑133 (MQ=255)
tttGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAgg < 1:111273/133‑1 (MQ=255)
ttGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGgcgt < 1:1460517/145‑1 (MQ=255)
gTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGa < 2:1459024/149‑1 (MQ=255)
tggtGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGaa < 2:1601453/146‑1 (MQ=255)
tGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAATCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGGGTCgcg < 2:1309545/149‑3 (MQ=255)
gCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAAc > 2:1163699/1‑149 (MQ=255)
cTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACt > 2:875220/1‑149 (MQ=255)
gTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTcc > 1:703255/1‑148 (MQ=255)
gTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCa < 1:253638/149‑1 (MQ=255)
aTGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCt > 2:1658974/1‑149 (MQ=255)
aTGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCt > 2:827462/1‑149 (MQ=255)
tGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTc < 2:1402089/149‑1 (MQ=255)
taCACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAgg < 1:1985112/112‑1 (MQ=255)
taCACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAgg > 2:1985112/1‑112 (MQ=255)
cacCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCAc > 1:1942387/1‑93 (MQ=255)
cacCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCAc < 2:1942387/93‑1 (MQ=255)
cATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTaa > 2:1443029/1‑97 (MQ=255)
aTCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGgc > 1:715380/1‑117 (MQ=255)
tCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGata > 1:2045767/1‑141 (MQ=255)
tCAATCTCAACCTCGGTCACAGAGCAAACCGGCATCGACGCGCGCAGGATGCGGCGCAGTGC‑CTACACATGCTGATTTTCAGAGCCGACCGCGAGAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAg < 1:1542396/149‑1 (MQ=255)
aaTCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGgc > 2:1775434/1‑149 (MQ=255)
aTCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGAAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGgcg > 1:1364842/1‑149 (MQ=255)
tctcAACCTCGGTCGCCGCGCAACGCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGgcgc > 1:1804221/1‑149 (MQ=255)
tctcAACCTCGGTCACCGCGCAACCCGGCGTGGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGgcgc > 2:1591623/1‑149 (MQ=255)
tctcAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGgcgc > 2:1952322/1‑149 (MQ=255)
ctcAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAgg > 1:842482/1‑93 (MQ=255)
tcAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCgg > 1:43415/1‑149 (MQ=255)
aaCCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGtg > 1:1746579/1‑148 (MQ=255)
aaCCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAAACAGGCGCGGtt > 2:1927149/1‑149 (MQ=255)
aCCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGttt > 2:681497/1‑149 (MQ=255)
ccgcGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCCCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGtttt < 2:366996/146‑1 (MQ=255)
cTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTaaa > 2:1507926/1‑85 (MQ=255)
cTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTaaa < 1:1507926/85‑1 (MQ=255)
tcggtcggCGCGCACTCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAg < 2:1473818/149‑1 (MQ=255)
tCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAg < 1:707941/149‑1 (MQ=255)
tCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAg > 1:1865959/1‑149 (MQ=255)
cACCGCGCAACCCGGCATTTATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCTTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAAct < 2:910506/149‑1 (MQ=255)
aCCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAActc < 1:1752871/149‑1 (MQ=255)
tcgcAACCCGGCCCTGATGAGAGCAGAACACGGCGCACTGCGTTATCCC‑GAGGATGGTCAAAGCCACGCTCTAACGGCTCAAGGGGCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGt < 1:966463/148‑1 (MQ=255)
aaCCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTcaca < 2:43415/149‑1 (MQ=255)
ccGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGaa > 1:322341/1‑149 (MQ=255)
ccGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGaa > 1:413585/1‑149 (MQ=255)
cGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGGTATCAACCAGGCGCGGTTTTAAAAACTCTGTCACAGAAc > 2:1571595/1‑149 (MQ=255)
ggCAACGATTAGAGCAGAATACGGCGCAGTGCACCTCATC‑GAATATCTTCAGATCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAAcc < 2:1994787/149‑1 (MQ=255)
cATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCt > 1:646613/1‑149 (MQ=255)
aTCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCCCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGCACCCTg > 1:406841/1‑149 (MQ=255)
tCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGc < 1:87359/149‑1 (MQ=255)
gATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCt > 1:1627869/1‑145 (MQ=255)
gATGAGAGCAGAATACGGCGCAGGGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCAt < 2:1628132/149‑1 (MQ=255)
gagaGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATtgt < 2:305516/149‑1 (MQ=255)
agagCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAATGTCTGCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATtgtg < 1:1536367/149‑1 (MQ=255)
gagCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACCGGACCCTGCATTgtgt > 1:562815/1‑149 (MQ=255)
agCGGAATACGCGGCGGTGCTTTCCCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTTACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTc < 2:515041/149‑1 (MQ=255)
agCAGAATACGGCGCAGTGCGTTACCAA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTc < 2:1407909/149‑1 (MQ=255)
cAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCCCGATCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCAATTGCTCGATATCAACCAGGCGGGGTTTTAGAAACTATGTGACAGAAGCGTGCATTGTGTCct > 2:659237/1‑149 (MQ=255)
cAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTCCATTGTGTCct > 2:46889/1‑149 (MQ=255)
aaTGCGGCGCATGGCGTTAACCC‑GAGTAGGGTCAAAGCCACGGTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAATTCTGTCACAGAACCCTGCATTGTGTCctctc < 2:1370765/149‑1 (MQ=255)
aaTACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCctctc > 1:1474327/1‑149 (MQ=255)
aaTACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGAGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCctctc > 1:1340545/1‑149 (MQ=255)
aTACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCctctct > 1:1231242/1‑149 (MQ=255)
tACGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCCAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTACTCTCtt > 1:71085/1‑149 (MQ=255)
cGGCGCAGTGCGTTACCCA‑GAGTATGGTCAAAGCCCCGATCTACACGCTCGCCCGGACGGTTCGCTTGTGTCGACCTAACTTGCTCGATATTAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTg < 2:2000355/149‑1 (MQ=255)
ggCGCAGTGCGTTACCCA‑GAGGATGGTCAAAGCCCCGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCCCAGAACCCGGCATTGTGTCCACTCGTTgg > 1:849712/1‑149 (MQ=255)
gggcAGGGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGt < 1:321955/147‑1 (MQ=255)
gcgcAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGt < 2:1231242/149‑1 (MQ=255)
cgcAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTa < 1:1341925/149‑1 (MQ=255)
gcAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTAc > 2:1535588/1‑149 (MQ=255)
gcAGTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTAc < 2:1798176/149‑1 (MQ=255)
gTGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGACGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTaa < 2:1083892/149‑1 (MQ=255)
tGCGTTACCCA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTGTTTGGTACTGAg > 1:185998/1‑149 (MQ=255)
cccA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTAc > 1:914768/1‑148 (MQ=255)
cccA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTAc < 2:914768/148‑1 (MQ=255)
cccA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACt > 2:1635864/1‑149 (MQ=255)
cccA‑GAGGATGGTCAAAGCCACGCGCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACt < 2:71085/149‑1 (MQ=255)
ccA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACtt > 1:798301/1‑149 (MQ=255)
cA‑GAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCATCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTg < 1:1833599/149‑1 (MQ=255)
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AGGTTGAGCAGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCA‑GAGTATGGCCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGG > NC_000913_3_pae_tpiA/3440776‑3441062
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
