Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A24 F106 I1 R1
|
19 |
81.9 |
2890106 |
93.9% |
2713809 |
142.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913_3_pae_tpiA |
3,440,923 |
C→T |
G36D (GGC→GAC) |
rpoA ← |
RNA polymerase, alpha subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913_3_pae_tpiA | 3,440,923 | 0 | C | T | 97.7%
| 397.9
/ NA
| 128 | G36D (GGC→GAC) | rpoA | RNA polymerase, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (71/54); minor base G (1/2); total (72/56) |
| Fisher's exact test for biased strand distribution p-value = 5.81e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 128 total aligned reads displayed.
GGTTGAGCAGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAA > NC_000913_3_pae_tpiA/3440777‑3441067
|
ggTTGAGCAGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCa > 2:861139/1‑149 (MQ=255)
gTTGAGCAGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCaa > 1:1440349/1‑149 (MQ=255)
gTTGAGCAGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCaa > 1:795226/1‑149 (MQ=255)
aGCAGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAACGTATGGTCAAAGcc > 1:1360192/1‑149 (MQ=255)
cAGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCAc > 2:234739/1‑149 (MQ=255)
aGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACg > 1:544616/1‑149 (MQ=255)
tttCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGctct > 2:456930/1‑149 (MQ=255)
cAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAg > 2:772017/1‑149 (MQ=255)
ggATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGc < 1:456930/149‑1 (MQ=255)
ggATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGc < 1:1257329/149‑1 (MQ=255)
tCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCCACCCGGCATCGATGCGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCACCGCCCTAACGGCTCacg > 2:166295/1‑147 (MQ=255)
tCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCCGAGTATGGTCAAAGCCACGCTCTAAAGGCTCagg > 1:1156884/1‑147 (MQ=255)
ttCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAggg > 2:1147/1‑149 (MQ=255)
ccTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTCCACCATCAATCTCAGCCTCGGTCACCGTGCAGCCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCGGCGTATGGTCAAAGGCACGCTCTAAAAGCTCTAggggc > 2:1033372/1‑147 (MQ=255)
ccTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTc < 2:544616/149‑1 (MQ=255)
tGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGCTGAGATCAGAATACGAAATCGTGTGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCAc > 1:273538/1‑149 (MQ=255)
gAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCAcc < 1:1147/149‑1 (MQ=255)
aaCGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCGAGGGTCCCCt > 1:908286/1‑149 (MQ=255)
gCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCCCCACGAAACTGGCCACCGATGAGACTGGATTACGTCGCAGTGCGTTACCCAGAGGATGGTCAAAGCCAGGCCCAAAAGGCTCAAGGGACACCTTgg > 1:1065633/1‑149 (MQ=255)
cttcttTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCCCGCTCTAACGGCTCAAGGGTCACCTTGgcg > 1:30249/1‑149 (MQ=255)
cttcttTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACGTTGgcg > 2:1432045/1‑149 (MQ=255)
cttTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAAGACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCGTGgcgtgc < 1:568296/149‑1 (MQ=255)
tttGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGgcgtgcg > 1:661203/1‑149 (MQ=255)
tttGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCGCTAAAGGCTCAAGGGTCACCTTGgcgtgcg > 1:450173/1‑149 (MQ=255)
tGCTGTACTCATGTAGTACACCATCACTCGCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGaa < 2:520527/149‑1 (MQ=255)
tGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGaa < 1:234739/149‑1 (MQ=255)
ggCTGGACTCATGTAGTACATCATCGATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATAAGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGaa < 2:728262/148‑1 (MQ=255)
gCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGaaa > 1:546964/1‑148 (MQ=255)
gTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTTACCTTGGCGTGCGTCGAACTCa > 1:1029639/1‑149 (MQ=255)
tACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCAc < 2:727167/149‑1 (MQ=255)
tACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCAc > 2:302067/1‑149 (MQ=255)
cTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCACAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACtt > 2:1283670/1‑149 (MQ=255)
tCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTCTGGTCAGAGCCACGCTCGAAAGGCCCAAGGGCCACCTTGCCGTGCGTCGACCTCCCtcg > 2:151565/1‑147 (MQ=255)
ctgtgGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑Ct > 2:1097798/2‑149 (MQ=255)
aTGTAGTACACCATCAATCTCACCCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCCGTGCGTTACCCAGAGTCTGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGGGCGTCGCACTCACTTA‑Ct > 2:717334/1‑149 (MQ=255)
gtagtaCACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCg > 1:179329/1‑149 (MQ=255)
tagtaCACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCCCTAAAGGCCCAAGGGTCACCTTGGCGTGCGTCGAACTCCCTTC‑CTcca > 1:545809/1‑147 (MQ=255)
agtaCACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGat < 1:1263801/149‑1 (MQ=255)
taCACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGatat > 1:1045630/1‑149 (MQ=255)
cATCAATCTCAACCTCGGTCACCGCGCCACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAAcc < 1:384777/149‑1 (MQ=255)
cATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAAcc > 1:897635/1‑149 (MQ=255)
aTCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCa < 2:179329/149‑1 (MQ=255)
aTCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCCAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATccacca > 2:18235/1‑149 (MQ=255)
aTCAATCTCAACCTAGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCa > 1:1251283/1‑149 (MQ=255)
tctcAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGacgc > 1:1083212/1‑149 (MQ=255)
tcAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGc > 1:1337042/1‑93 (MQ=255)
tcAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGc < 2:1337042/93‑1 (MQ=255)
caccgtCGGTACCCGGGCAACCCGGCATCGATACGAGCCGAATCCGGTCCCGTGCGTTCCCCAGAGTATCGTCAATCCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCCTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGt < 2:829113/144‑1 (MQ=255)
aCCTCGGTGACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGttt < 2:917903/149‑1 (MQ=255)
tCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAg > 1:1113196/1‑149 (MQ=255)
tCGGGCACCGCGTAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCCCGCTCAAAAGGCTCAGAGGTCACCGTGGCGTGCCTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAg < 2:888090/149‑1 (MQ=255)
cgTCACCGCGCAGCCCGGCATCGAGGAGAGCAGAATAAGGCGCAGTGCGTTCCCCAGAGTATGGTCAAAGACACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGaa < 2:303411/148‑1 (MQ=255)
ccGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAActct > 1:1005365/1‑149 (MQ=255)
gggccaCCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGt < 2:187471/144‑1 (MQ=255)
gcgcAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCGCAAGGGTCACCTTGGGTGGCGGCTAACTCGCTTG‑CTCGGTATTAAGCAGGCGCGAGTTTAGAAActcggg > 1:1382945/1‑146 (MQ=255)
cgcAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTc < 1:1027376/149‑1 (MQ=255)
aaCCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTcaca < 1:481214/149‑1 (MQ=255)
tccGGCATCGAGGAGAGCAGAATACGGCGCAGTGCGCTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCATTTT‑CTCGATATCGACCAGGCGCGGTTTTAGAAACTCTGTCACAGa < 1:1144163/148‑1 (MQ=255)
cccGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGa > 1:1058204/1‑149 (MQ=255)
ccGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGaa > 2:491899/1‑149 (MQ=255)
cGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTa > 1:1291241/1‑131 (MQ=255)
cGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTa < 2:1291241/131‑1 (MQ=255)
caacGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCt < 1:302067/146‑1 (MQ=255)
cATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTTACTGAACCCt > 1:58672/1‑149 (MQ=255)
cATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCt < 2:1440349/149‑1 (MQ=255)
cGATGAGAGCAGAATACGGCGCAGTGCGTTACCATGAGTATGGTTGTCGCCGAAGAAACCGTACTCGAGGGTTAACTTGGAGTGCGTCGAAGTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCa < 2:1029639/149‑1 (MQ=255)
tGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCCCCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCGCAGAACCCTGCATtg > 1:692645/1‑149 (MQ=255)
agagCAGAATACGGCGCAGTGCGTTACCCAGATTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATtgtg < 2:1112401/149‑1 (MQ=255)
agCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCCCTTG‑CCCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTc < 1:772017/149‑1 (MQ=255)
agCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTc > 1:164959/1‑149 (MQ=255)
agCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTc < 2:1045630/149‑1 (MQ=255)
cAGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCct < 2:1001357/149‑1 (MQ=255)
aGAATACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCctc > 2:353365/1‑149 (MQ=255)
aGAATACGGCGCAGGGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCctc < 2:795226/149‑1 (MQ=255)
tACGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTATCCTCTCtt > 2:876584/1‑149 (MQ=255)
tACGGCGCAGTACGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCCTTGTGTCCTCTCtt > 1:886302/1‑149 (MQ=255)
aCGGCGCAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCGCTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCttt < 1:1102093/149‑1 (MQ=255)
aCGGCGCAGTGCGTTACCCAGAGTACGGGCATAGCCACGCCCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCttt < 1:1194949/149‑1 (MQ=255)
ggCGCAGTGCCTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTTACAGAACCCTGCATTGTGTCCTCTCTTTgg < 1:857066/149‑1 (MQ=255)
gcgcAGTGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGt < 2:407066/149‑1 (MQ=255)
tGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCTCGGTTTTAGAAACTCTGTCACAGCACCCTGCATTGTCTCCTCTCTTTGGTACTAAg > 2:618035/1‑149 (MQ=255)
tGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAg > 1:721916/1‑149 (MQ=255)
tGCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCCCTTTGGTACtcat > 2:492419/1‑146 (MQ=255)
gCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGc < 2:995761/149‑1 (MQ=255)
gCGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACATGGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGc > 1:1005498/1‑149 (MQ=255)
gCGTGACGCAGAGTATTGGTAAGGTCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGc < 2:466306/149‑1 (MQ=255)
cGTTACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGACCCCTGCCTTGTGTCTTCCCTTGGGTACTAAgat > 1:1211499/1‑147 (MQ=255)
gttgcgcAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACGCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCtt < 2:1288839/143‑1 (MQ=255)
ttACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCttt > 2:733390/1‑149 (MQ=255)
ttACCCAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATCGTGTCCTCTCTTTGGTACTAAGCttt > 2:954423/1‑149 (MQ=255)
cccAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGt > 2:571051/1‑136 (MQ=255)
ccAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCCCAGAACCCTGCCTTGTGTCCTCTCTTTGGTACTAAGCtttcatt > 1:583571/1‑145 (MQ=255)
cAGAGTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAACGTTAAACATTTTGTCCTCTCTTTGGTACTAAGCTTTACTTg < 1:708508/149‑1 (MQ=255)
gagTATGGTCAAAGCCACGGTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGa < 2:516604/149‑1 (MQ=255)
gagTATGGTCAAAGCCACGCTCTTAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGa < 2:1020908/149‑1 (MQ=255)
gagTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCTTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGa < 1:130133/149‑1 (MQ=255)
gagTATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGa < 1:18235/149‑1 (MQ=255)
tATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAActct > 1:801532/1‑95 (MQ=255)
tATGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAActct < 2:801532/95‑1 (MQ=255)
aTGGTCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCAATTGCCGCGA‑ATCAACCACGCTATGGGTGAGAAACTCTGTCACAGAACCCGCCATTGTGTCCTCTCTCTGGTACTAAGCTTTACTTGGAggca > 1:1421751/1‑146 (MQ=255)
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GGTTGAGCAGGATTTCCAGGATATCTTCCTGAACGCCTTCTTTGGTGCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACGCTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTG‑CTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAA > NC_000913_3_pae_tpiA/3440777‑3441067
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
