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Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F60 I1 R1	13	156.7	5387192	99.4%	5354868	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,501,724	Δ16,748 bp	IS1‑mediated	insG–fecI	18 genes insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4501724	4518471	16748	178 [0]	[0] 179	insG–fecI	insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4501723	0 (0.000)	178 (1.110)	96/278	0.1	100%	intergenic (+134/+380)	yjgZ/insG	KpLE2 phage‑like element; uncharacterized protein YjgZ/KpLE2 phage‑like element; IS4 putative transposase
*	?	NC_000913	4518472 =	NA (NA)	178 (1.110)	96/278	0.1	100%	noncoding (1/768 nt)	IS1	repeat region

GATK/CNVnator alignment

N/A