Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F73 I1 R1
|
27 |
19.6 |
661800 |
98.9% |
654520 |
139.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,469,105 |
A→T |
K298* (AAA→TAA) |
yfdH → |
CPS‑53 (KpLE1) prophage; bactoprenol glucosyl transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,469,105 | 0 | A | T | 100.0%
| 72.1
/ NA
| 22 | K298* (AAA→TAA) | yfdH | CPS‑53 (KpLE1) prophage; bactoprenol glucosyl transferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (16/6); total (16/6) |
TATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATT > NC_000913/2468966‑2469238
|
tATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGa > 2:158022/1‑140 (MQ=255)
ggAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATAcatcat > 2:19091/1‑140 (MQ=255)
ttAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTc > 1:91234/1‑140 (MQ=255)
atatCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAAt > 1:209773/1‑140 (MQ=255)
tatCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCaaaaa < 2:40475/137‑1 (MQ=255)
tatCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCaaaaa > 1:40475/1‑137 (MQ=255)
tCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAATGaa > 1:115148/1‑140 (MQ=255)
tCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAATGaa > 1:268521/1‑140 (MQ=255)
tCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAATGAATaaa > 1:317127/1‑140 (MQ=255)
gTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATaaaa < 1:98087/140‑1 (MQ=255)
tCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTa > 1:39019/1‑140 (MQ=255)
aTACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCa < 2:115148/140‑1 (MQ=255)
tGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAACAGTATCATTGt > 2:45086/1‑140 (MQ=255)
tttttAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGCCAAAAAATGAATAAAGCAATAAAAGTATCATTGtat > 2:91001/1‑140 (MQ=255)
gAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTAt > 2:56086/1‑140 (MQ=255)
ttAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTaaa > 2:153230/1‑140 (MQ=255)
aaTATATTGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATaa < 2:268521/140‑1 (MQ=255)
tGGACGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGtt > 1:114983/1‑140 (MQ=255)
aCGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTaaa < 1:98300/140‑1 (MQ=255)
cGCACATACATTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAAt > 2:4764/1‑140 (MQ=255)
acatacatTGAAACCAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACa > 2:276818/1‑140 (MQ=255)
cAAAAAACGCCCGTAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAag > 2:14430/1‑140 (MQ=255)
cGCCCGTAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGagccatt < 1:19091/140‑1 (MQ=255)
|
TATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATT > NC_000913/2468966‑2469238
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
