Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	224	87.5	2960670	99.3%	2939945	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,565,382	A→G	Y400Y (TAT→TAC)	glgP ←	glycogen phosphorylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,565,382	0	A	G	100.0%	294.7 / NA	85	Y400Y (TAT→TAC)	glgP	glycogen phosphorylase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (47/38); total (47/38)

ACCATCAGATTAGAGTGCAGTTCCGATACACCGTTAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGATACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGTGTGGTTAGTG  >  NC_000913/3565245‑3565514

cccctCAGATTAGAGTGCAGTTCGTGTACACCGTTAACTTTGTGCCTCACAACAACCGCCAGCCAGGCCATTCGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCACATCGGTATCGTTCGGGTa                                                                                                                                    <  2:208656/136‑1 (MQ=255)

   aTCAGATTAGAGTGCAGTTCCGATACACCGTTAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACTGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTg                                                                                                                                 <  2:174407/140‑1 (MQ=255)

          tAGAGTGCAGTTCCGATACACCGTTAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTg                                                                                                                                 <  1:1080398/133‑1 (MQ=255)

          tAGAGTGCAGTTCCGATACACCGTTAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTg                                                                                                                                 >  2:1080398/1‑133 (MQ=255)

               tGCAGTTCCGATACACCGTTAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGt                                                                                                                     <  2:1067014/140‑1 (MQ=255)

                 cAGTTCCGATACACCGTTAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGttt                                                                                                                   >  2:191689/1‑140 (MQ=255)

                 cAGTTCCGATACACCGTTAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGttt                                                                                                                   >  2:667776/1‑140 (MQ=255)

                  aGTTCCGATACACCGTTAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCa                                                                                                                         >  2:195846/1‑133 (MQ=255)

                  aGTTCCGATACACCGTTAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCa                                                                                                                         <  1:195846/133‑1 (MQ=255)

                  aGTTCCGATACACCGTTAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGtttt                                                                                                                  >  2:848169/1‑140 (MQ=255)

                  aGTTCCGATACACCGTTAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGtttt                                                                                                                  >  1:1274975/1‑140 (MQ=255)

                    ttCCGATACACCGTTAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCa                                                                                                                >  2:646893/1‑140 (MQ=255)

                      ccGATACACCGTTAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAgg                                                                                                              >  1:535782/1‑140 (MQ=255)

                         aTACACCGTTAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGaaa                                                                                                           <  1:312491/140‑1 (MQ=255)

                                 ttAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGtt                                                                                                   >  2:567412/1‑140 (MQ=255)

                                 ttAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGtt                                                                                                   <  1:567412/140‑1 (MQ=255)

                                 ttAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGtt                                                                                                   >  1:1326914/1‑140 (MQ=255)

                                  tAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGGACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTg                                                                                                  >  2:1018490/1‑140 (MQ=255)

                                    aCTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGAt                                                                                                <  1:411294/140‑1 (MQ=255)

                                    aCTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGAt                                                                                                >  2:65190/1‑140 (MQ=255)

                                        tgtgGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCa                                                                                            >  2:553759/1‑140 (MQ=255)

                                         gtgGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCaa                                                                                           <  2:1351045/140‑1 (MQ=255)

                                         gtgGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCaa                                                                                           >  2:894430/1‑140 (MQ=255)

                                         gtgGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCaa                                                                                           >  2:278740/1‑140 (MQ=255)

                                           ggCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAg                                                                                         >  2:230393/1‑140 (MQ=255)

                                            gCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAga                                                                                        <  2:454984/140‑1 (MQ=255)

                                             cTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAgat                                                                                       <  1:191689/140‑1 (MQ=255)

                                              tCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAgatg                                                                                      >  1:940940/1‑140 (MQ=255)

                                                acaacaACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCaa                                                                                           >  1:838325/1‑133 (MQ=255)

                                                acaacaACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCaa                                                                                           <  2:838325/133‑1 (MQ=255)

                                                acaacaACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAgatgat                                                                                    <  1:553759/140‑1 (MQ=255)

                                                acaacaACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAgatgat                                                                                    >  1:712018/1‑140 (MQ=255)

                                                      acCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTAGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAg                                                                              >  2:1254518/1‑140 (MQ=255)

                                                            agccagGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGAcg                                                                        >  2:378876/1‑140 (MQ=255)

                                                            agccagGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGAcg                                                                        >  1:493572/1‑140 (MQ=255)

                                                              ccagGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGAcgcg                                                                      >  2:1379846/1‑140 (MQ=255)

                                                                 ggCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCa                                                                   <  2:774658/140‑1 (MQ=255)

                                                                  gCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAg                                                                  >  1:222230/1‑140 (MQ=255)

                                                                    cATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGaa                                                                <  1:480300/140‑1 (MQ=255)

                                                                        cGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAAtttt                                                            <  2:1274975/140‑1 (MQ=255)

                                                                        cGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAAtttt                                                            >  1:1036536/1‑140 (MQ=255)

                                                                         gCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTa                                                           <  2:222230/140‑1 (MQ=255)

                                                                            cacGGCGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGGCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCATAATTGTAccc                                                        <  2:231609/140‑1 (MQ=255)

                                                                            cacGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTAccc                                                        <  1:606350/140‑1 (MQ=255)

                                                                            cacGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTAccc                                                        <  1:65190/140‑1 (MQ=255)

                                                                            cacGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGCACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTAccc                                                        >  2:1317165/1‑140 (MQ=255)

                                                                             acgacgACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTAGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCa                                                       <  1:1254518/140‑1 (MQ=255)

                                                                                       ttGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAAc                                             >  2:815901/1‑140 (MQ=255)

                                                                                              catcaATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAg                                      <  1:894430/140‑1 (MQ=255)

                                                                                              catcaATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAg                                      >  2:209140/1‑140 (MQ=255)

                                                                                               atcaATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAgg                                     >  2:691937/1‑140 (MQ=255)

                                                                                                   aTGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTc                                 <  1:968660/140‑1 (MQ=255)

                                                                                                    tGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTcc                                >  1:1374881/1‑140 (MQ=255)

                                                                                                         gACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGTATTTTACCCAGCATATCAACCGGCCAGGTTTCCAgcgc                           >  2:1237400/1‑140 (MQ=255)

                                                                                                         gACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAgcgc                           >  2:936446/1‑140 (MQ=255)

                                                                                                         gACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCAAGGTTTCCAgcg                            >  2:150920/1‑139 (MQ=255)

                                                                                                         gACGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCAAGGTTTCCAgcg                            <  1:150920/139‑1 (MQ=255)

                                                                                                          aCGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAg                                      >  1:1086627/1‑128 (MQ=255)

                                                                                                          aCGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAg                                      <  2:1086627/128‑1 (MQ=255)

                                                                                                          aCGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGcc                          >  1:1128564/1‑140 (MQ=255)

                                                                                                          aCGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGcc                          <  1:562716/140‑1 (MQ=255)

                                                                                                          aCGCCCGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGcc                          <  1:201237/140‑1 (MQ=255)

                                                                                                               cGTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCt                     <  1:646893/140‑1 (MQ=255)

                                                                                                                gTCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCtc                    >  2:669959/1‑140 (MQ=255)

                                                                                                                 tCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCtca                   >  1:242690/1‑140 (MQ=255)

                                                                                                                 tCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCtca                   >  1:988738/1‑140 (MQ=255)

                                                                                                                 tCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCtca                   >  2:50215/1‑140 (MQ=255)

                                                                                                                 tCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCtca                   >  2:478249/1‑140 (MQ=255)

                                                                                                                 tCCCAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCtca                   <  1:669959/140‑1 (MQ=255)

                                                                                                                  cccAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCtcat                  <  2:1036536/140‑1 (MQ=255)

                                                                                                                   ccAGCAGATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCtcatc                 <  1:478249/140‑1 (MQ=255)

                                                                                                                       cagATCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCg             <  1:230393/140‑1 (MQ=255)

                                                                                                                          aTCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCgtgt          >  2:877960/1‑140 (MQ=255)

                                                                                                                          aTCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCgtgt          >  1:74454/1‑140 (MQ=255)

                                                                                                                           tCGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGtgtg         <  1:473477/140‑1 (MQ=255)

                                                                                                                            cGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTTACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGTGTgg        >  1:42985/1‑140 (MQ=255)

                                                                                                                            cGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGTGTgg        >  2:266937/1‑140 (MQ=255)

                                                                                                                            cGGTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGTGTgg        >  1:871009/1‑140 (MQ=255)

                                                                                                                             ggTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGTGTGGt       <  1:1379846/140‑1 (MQ=255)

                                                                                                                             ggTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGTGTGGt       <  1:815901/140‑1 (MQ=255)

                                                                                                                             ggTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGTGTGGt       <  2:1128564/140‑1 (MQ=255)

                                                                                                                             ggTATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGTGTGGt       <  1:667776/140‑1 (MQ=255)

                                                                                                                               tATCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGTGTGGTTa     <  1:848169/140‑1 (MQ=255)

                                                                                                                                 tCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGTGTGGTTAgt   >  1:1031920/1‑140 (MQ=255)

                                                                                                                                 tCGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGTGTGGTTAgt   >  2:407649/1‑140 (MQ=255)

                                                                                                                                  cGTTCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTTACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGTGTGGTTAgtg  <  2:42985/140‑1 (MQ=255)

                                                                                                                                    ttCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGTGTGGt       <  2:779160/133‑1 (MQ=255)

                                                                                                                                    ttCGGGTACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGTGTGGt       >  1:779160/1‑133 (MQ=255)

ACCATCAGATTAGAGTGCAGTTCCGATACACCGTTAACTTTGTGGCTCACAACAACCGCCAGCCAGGCCATACGCACACGACGACCGTTGGATTCATCAATGATCGACGCCCGTCCCAGCAGATCGGTATCGTTCGGATACTGTTCCTGCAAGGTTTTCAGGAAATAGTCGTTGATTTCAAAGATGATCTGCAGGTGACGCGGCAGAATTTTACCCAGCATATCAACCGGCCAGGTTTCCAGCGCCTCGCTCATCAGCGTGTGGTTAGTG  >  NC_000913/3565245‑3565514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A