Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	172	67.8	2301510	98.9%	2276193	138.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,580,766	T→C	T14A (ACC→GCC)	yhhX ←	putative oxidoreductase YhhX

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,580,766	0	T	C	100.0%	240.9 / NA	69	T14A (ACC→GCC)	yhhX	putative oxidoreductase YhhX
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (37/32); total (37/32)

CGTCGAGATCGCTGGTGAAATGGATATGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGT  >  NC_000913/3580631‑3580898

cgtcgAGATCGCTGGTGAAATGGATATGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCtt                                                                                                                                  >  2:815843/1‑140 (MQ=255)

cgtcgAGATCGCTGGTGAAATGGATATGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCtt                                                                                                                                  >  2:735225/1‑140 (MQ=255)

     agaTCGCTGGTGAAATGGATATGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGcc                                                                                                                             >  1:366106/1‑140 (MQ=255)

      gaTCGCTGGTGAAATGGATATGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCg                                                                                                                            <  1:735225/140‑1 (MQ=255)

      gaTCGCTGGTGAAATGGATATGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCg                                                                                                                            <  1:1113507/140‑1 (MQ=255)

      gaTCGCTGGTGAAATGGATATGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCg                                                                                                                            <  1:206535/140‑1 (MQ=255)

        tCGCTGGTGAAATGGATATGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGaa                                                                                                                          <  2:157537/140‑1 (MQ=255)

                 aaaTGGATATGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATaaa                                                                                                                 >  1:680738/1‑140 (MQ=255)

                 aaaTGGATATGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATaaa                                                                                                                 >  2:810111/1‑140 (MQ=255)

                   aTGGATATGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCg                                                                                                                            >  2:463224/1‑127 (MQ=255)

                   aTGGATATGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCg                                                                                                                            <  1:463224/127‑1 (MQ=255)

                        tatGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGaa                                                                                                                          <  2:518134/124‑1 (MQ=255)

                        tatGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGaa                                                                                                                          >  1:518134/1‑124 (MQ=255)

                        tatGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAg                                                                                                          >  1:241587/1‑140 (MQ=255)

                        tatGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAg                                                                                                          >  2:566182/1‑140 (MQ=255)

                           gggAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTtg                                                                                                       >  1:1078700/1‑140 (MQ=255)

                              aaTAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTtgatg                                                                                                    >  2:319011/1‑140 (MQ=255)

                                 aaaTGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGAcc                                                                                                 >  2:1012141/1‑140 (MQ=255)

                                       gAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGAtt                                                                                           >  2:530160/1‑140 (MQ=255)

                                        aGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGAttt                                                                                          >  2:816180/1‑140 (MQ=255)

                                         gCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTc                                                                                         >  2:882808/1‑140 (MQ=255)

                                          ccTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCg                                                                                        >  2:738180/1‑140 (MQ=255)

                                           cTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGt                                                                                       <  1:816180/140‑1 (MQ=255)

                                            tGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTc                                                                                      >  1:1056175/1‑140 (MQ=255)

                                               tcttcCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGt                                                                                       <  1:1099506/136‑1 (MQ=255)

                                               tcttcCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGt                                                                                       >  2:1099506/1‑136 (MQ=255)

                                                   ccGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTa                                                                               <  2:366106/140‑1 (MQ=255)

                                                    cGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAAATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTaa                                                                              >  2:151687/1‑140 (MQ=255)

                                                      gCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAgg                                                                            <  2:1078700/140‑1 (MQ=255)

                                                        ttCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAggtg                                                                          <  1:530160/140‑1 (MQ=255)

                                                        ttCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAggtg                                                                          <  1:738180/140‑1 (MQ=255)

                                                        ttCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAggtg                                                                          <  1:810111/140‑1 (MQ=255)

                                                         tCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAggtgg                                                                         <  2:928491/140‑1 (MQ=255)

                                                         tCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAggtgg                                                                         <  2:680738/140‑1 (MQ=255)

                                                         tCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAggtgg                                                                         <  2:1056175/140‑1 (MQ=255)

                                                          cGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAggtggt                                                                        >  2:390040/1‑140 (MQ=255)

                                                           gCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGtt                                                                       <  1:256695/140‑1 (MQ=255)

                                                                            atGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCa                                                      <  2:466392/140‑1 (MQ=255)

                                                                            atGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAAATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCa                                                      <  1:151687/140‑1 (MQ=255)

                                                                                gcgACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGc                                                  <  1:319011/140‑1 (MQ=255)

                                                                                   aCATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGa                                               >  1:834901/1‑140 (MQ=255)

                                                                                     aTGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACg                                             <  2:834901/140‑1 (MQ=255)

                                                                                       gCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTg                                           >  1:430928/1‑140 (MQ=255)

                                                                                         cAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGt                                         <  2:820023/140‑1 (MQ=255)

                                                                                              aTCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGAc                                              >  2:52991/1‑130 (MQ=255)

                                                                                              aTCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGAc                                              <  1:52991/130‑1 (MQ=255)

                                                                                                ccTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTg                                           >  2:325655/1‑131 (MQ=255)

                                                                                                ccTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTg                                           <  1:325655/131‑1 (MQ=255)

                                                                                                   tGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGa                               >  2:643445/1‑140 (MQ=255)

                                                                                                     cGGTTAAGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGt                             >  2:891839/1‑140 (MQ=255)

                                                                                                          aaGTACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCa                        >  1:972744/1‑140 (MQ=255)

                                                                                                             tACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGt                             <  2:881489/132‑1 (MQ=255)

                                                                                                             tACATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGt                             >  1:881489/1‑132 (MQ=255)

                                                                                                               cATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACg                   <  1:566182/140‑1 (MQ=255)

                                                                                                               cATACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACg                   <  1:658867/140‑1 (MQ=255)

                                                                                                                aTACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGa                  >  2:59110/1‑140 (MQ=255)

                                                                                                                 tACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGaa                 >  2:62383/1‑140 (MQ=255)

                                                                                                                 tACGGCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGaa                 <  1:59110/140‑1 (MQ=255)

                                                                                                                    ggCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAg                              >  2:576575/1‑124 (MQ=255)

                                                                                                                    ggCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAg                              <  1:576575/124‑1 (MQ=255)

                                                                                                                    ggCAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGACTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAacac              >  1:446260/1‑140 (MQ=255)

                                                                                                                      cAGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGCGCGCATAACGAACACaa            >  1:364720/1‑140 (MQ=255)

                                                                                                                       aGATGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAg           <  1:882808/140‑1 (MQ=255)

                                                                                                                         aTGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCa         >  1:42978/1‑140 (MQ=255)

                                                                                                                         aTGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCa         >  2:352822/1‑140 (MQ=255)

                                                                                                                         aTGGTAACGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCGTTTTAAGGTGGTTATTTACACCTTAGCGCAAGGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCa         <  2:144393/140‑1 (MQ=255)

                                                                                                                               aCGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCg   <  1:643445/140‑1 (MQ=255)

                                                                                                                               aCGGGTGGCGCTTTTACCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCg   >  2:1070246/1‑140 (MQ=255)

                                                                                                                                cGGGTGGCGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGt  >  2:235081/1‑140 (MQ=255)

CGTCGAGATCGCTGGTGAAATGGATATGGGAATAAATGGGAGCCTGTTCTTCCGGCTTCGCATGGCGACGAAAAATATGCGCGACATGCCAGCTATCCTTGCGGTTAAGTACATACGGCAGATGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGT  >  NC_000913/3580631‑3580898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A