Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F28 I1 R1
|
258 |
142.3 |
4824480 |
99.1% |
4781059 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,594,256 |
(C)8→9 |
pseudogene (3831/5422 nt) |
yneO ← |
AIDA‑I family autotransporter YneO |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,594,248 | 1 | . | C | 93.6%
| 473.2
/ 20.9
| 140 | pseudogene (3839/5422 nt) | yneO | AIDA‑I family autotransporter YneO |
| Reads supporting (aligned to +/- strand): ref base . (5/4); new base C (73/58); total (78/62) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.29e-01 |
Only 100 of 152 total aligned reads displayed.
TTAGCGACACGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TT‑‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTGGAGATG > NC_000913/1594109‑1594385
|
ttAGCGACACGCAGTG‑‑CCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TT‑‑cc < 2:1578585/140‑1 (MQ=255)
tAGCGACACGCAGTG‑‑CCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TT‑‑ccc < 2:302432/140‑1 (MQ=255)
aGCGACACGCAGTG‑‑CCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TT‑‑cccc < 1:2362488/140‑1 (MQ=255)
aGCGACACGCAGTG‑‑CCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TT‑‑cccc > 1:1368148/1‑140 (MQ=255)
gACACGCAGTG‑‑CCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TT‑‑ccccccc < 2:1793987/140‑1 (MQ=255)
gACACGCAGTG‑‑CCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TT‑‑ccccccc > 2:873363/1‑140 (MQ=255)
acGCAGTG‑‑CCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TT‑‑ccccccccca > 2:2175958/1‑138 (MQ=255)
cccccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCcg < 2:1582689/140‑1 (MQ=255)
ccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCcgtcg < 2:442452/140‑1 (MQ=255)
aCGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGAt > 1:522009/1‑140 (MQ=255)
cATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATAcgcc > 1:941607/1‑140 (MQ=255)
atCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCcgcg < 1:1478928/140‑1 (MQ=255)
ccTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAAt > 1:1488420/1‑140 (MQ=255)
ccTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAAt > 1:1848148/1‑140 (MQ=255)
ccTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAAt > 1:875171/1‑140 (MQ=255)
cTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATc < 2:1367041/140‑1 (MQ=255)
cTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATc < 1:1006010/140‑1 (MQ=255)
tggtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttgtt < 2:1418173/140‑1 (MQ=255)
ggtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTa < 2:925371/140‑1 (MQ=255)
tgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAag > 1:138037/1‑140 (MQ=255)
tgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAag < 2:2031611/140‑1 (MQ=255)
gACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAaga > 2:1392477/1‑140 (MQ=255)
aTTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTc > 2:116338/1‑140 (MQ=255)
tCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAgg > 1:49771/1‑140 (MQ=255)
cacCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTAcc < 2:1368148/140‑1 (MQ=255)
cacCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTAcc < 1:1268935/140‑1 (MQ=255)
acCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTAccc > 2:469214/1‑140 (MQ=255)
acCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTAccc < 2:1831705/140‑1 (MQ=255)
ccGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCa < 1:1040334/140‑1 (MQ=255)
gCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGt < 1:469214/140‑1 (MQ=255)
cTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGtt > 2:2017524/1‑140 (MQ=255)
tatTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATc < 1:2014772/140‑1 (MQ=255)
tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGTGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCacc > 1:2059432/1‑140 (MQ=255)
tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGt < 2:1909964/131‑1 (MQ=255)
tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGt > 1:1909964/1‑131 (MQ=255)
tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTc < 1:1670228/132‑1 (MQ=255)
tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCacc > 2:927239/1‑140 (MQ=255)
tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCacc > 2:563686/1‑140 (MQ=255)
tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCacc > 1:300405/1‑140 (MQ=255)
tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCacc > 1:554207/1‑140 (MQ=255)
tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCacc > 1:175738/1‑140 (MQ=255)
tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TT‑‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccg > 1:2268635/1‑140 (MQ=255)
aaTGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccg < 1:1813453/140‑1 (MQ=255)
aaTGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCac < 2:190553/138‑1 (MQ=255)
tgtgTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgct > 2:1686969/1‑140 (MQ=255)
tgtgTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgct < 2:941607/140‑1 (MQ=255)
tgtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTCCCCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgcta > 1:1101404/1‑140 (MQ=255)
tgtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctac > 2:1384442/1‑140 (MQ=255)
tgtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgct < 2:2092732/138‑1 (MQ=255)
tgtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgct > 1:2092732/1‑138 (MQ=255)
gtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTCCCCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctac < 2:1101404/140‑1 (MQ=255)
gtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctacc > 2:1115780/1‑140 (MQ=255)
ttGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTg < 1:1903706/123‑1 (MQ=255)
ttGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctaccg > 1:1606028/1‑140 (MQ=255)
ttGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctaccg > 1:218861/1‑140 (MQ=255)
aCTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctac < 2:468450/135‑1 (MQ=255)
ttGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgct > 1:2343990/1‑131 (MQ=255)
tGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATa > 1:841013/1‑140 (MQ=255)
tGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATa > 1:869653/1‑140 (MQ=255)
gCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATAc > 2:674115/1‑140 (MQ=255)
gCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TT‑‑CCCCCCCCCAACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATa < 1:1183117/140‑1 (MQ=255)
aTGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACtgtg < 1:2397250/135‑1 (MQ=255)
aTGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACtgtg > 2:2397250/1‑135 (MQ=255)
aTGGCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGCGCGTCa < 1:1411831/140‑1 (MQ=255)
ggCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATc > 2:740801/1‑140 (MQ=255)
ggCAGAGTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATc > 1:146249/1‑140 (MQ=255)
agagTCGGAACCGAAAGCAATCTC‑‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGcc > 2:1697459/1‑140 (MQ=255)
agagTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGcc > 1:1262158/1‑140 (MQ=255)
agagTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGcc < 2:1262158/140‑1 (MQ=255)
gagTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGccc > 1:1315696/1‑140 (MQ=255)
agTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATTGCCCa > 1:1926199/1‑140 (MQ=255)
agTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCa > 2:1320935/1‑140 (MQ=255)
agTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCa > 2:793728/1‑140 (MQ=255)
agTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCa > 1:18226/1‑140 (MQ=255)
agTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCa > 1:611115/1‑140 (MQ=255)
agTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCa > 2:1469852/1‑140 (MQ=255)
agTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCa > 2:11852/1‑140 (MQ=255)
agTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCa > 1:457063/1‑140 (MQ=255)
agTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCa > 1:2011463/1‑140 (MQ=255)
agTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCa > 2:1840290/1‑140 (MQ=255)
agTCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCa > 2:1306079/1‑140 (MQ=255)
tCGGAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGc > 2:2323940/1‑140 (MQ=255)
gAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCg > 2:2282734/1‑131 (MQ=255)
gAACCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCg < 1:2282734/131‑1 (MQ=255)
aaCCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACg < 1:1277479/140‑1 (MQ=255)
aaCCGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACg < 1:740801/140‑1 (MQ=255)
ccGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCt < 1:927239/140‑1 (MQ=255)
ctaaaGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTc < 2:1145755/138‑1 (MQ=255)
cGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTc < 1:93102/140‑1 (MQ=255)
cGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTc < 2:175738/140‑1 (MQ=255)
cGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTc < 1:570731/140‑1 (MQ=255)
cGAAAGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTc < 2:554207/140‑1 (MQ=255)
aaaGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAg < 1:1392477/140‑1 (MQ=255)
aaGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGt > 1:19891/1‑140 (MQ=255)
aaGCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGt > 2:57375/1‑140 (MQ=255)
gCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTgg < 2:869653/140‑1 (MQ=255)
gCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTgg < 1:877865/140‑1 (MQ=255)
gCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTgg < 2:250155/140‑1 (MQ=255)
gCAAT‑TTC‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTgg < 2:1848148/140‑1 (MQ=255)
t‑tt‑‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTGGAGATg < 1:717593/140‑1 (MQ=255)
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TTAGCGACACGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAAT‑TT‑‑CCCCCCCC‑‑ACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTGGAGATG > NC_000913/1594109‑1594385
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
