Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	162	93.0	3098984	99.0%	3067994	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,782,804	A→G	intergenic (‑78/+261)	ypjA ← / ← pinH	adhesin‑like autotransporter YpjA/putative invertase fragment

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,782,804	0	A	G	99.2%	452.5 / ‑4.8	122	intergenic (‑78/+261)	ypjA/pinH	adhesin‑like autotransporter YpjA/putative invertase fragment
Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (52/69); total (53/69)
Fisher's exact test for biased strand distribution p-value = 4.34e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.22e-01

Only 100 of 136 total aligned reads displayed.

GGCAGATATCAATAAGGAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGG  >  NC_000913/2782667‑2782938

ggCAGATATCAATAAGGAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCgcc                                                                                                                                      >  2:366364/1‑140 (MQ=255)

ggCAGATATCAATAAGGAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCgcc                                                                                                                                      >  2:1376267/1‑140 (MQ=255)

ggCAGATATCAATAAGGAAAGTACTGAGCGGCGACAATAATA‑GGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCgcca                                                                                                                                     <  2:1403669/140‑1 (MQ=255)

  cAGATATCAATAAGGAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCgccag                                                                                                                                    >  1:1394421/1‑140 (MQ=255)

  cAGATATCAATAAGGAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCgccag                                                                                                                                    >  1:631153/1‑140 (MQ=255)

   aGATATCAATAAGGAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCgccaga                                                                                                                                   <  2:1004835/140‑1 (MQ=255)

    gATATCAATAAGGAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCgccagac                                                                                                                                  >  2:541284/1‑140 (MQ=255)

     atatCAATAAGGAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTACAACATCAGCCCACAGGCgccagacc                                                                                                                                 >  2:1009982/1‑140 (MQ=255)

       atCAATAAGGAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCgccagaccag                                                                                                                               >  2:1529658/1‑140 (MQ=255)

        tCAATAAGGAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAgg                                                                                                                              >  2:517554/1‑140 (MQ=255)

            tAAGGAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGAt                                                                                                                          <  1:952529/140‑1 (MQ=255)

            tAAGGAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGAt                                                                                                                          <  2:1355187/140‑1 (MQ=255)

              aGGAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTc                                                                                                                        <  1:1339410/140‑1 (MQ=255)

               ggAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCa                                                                                                                       >  1:859078/1‑140 (MQ=255)

                gAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCAt                                                                                                                      <  1:30611/140‑1 (MQ=255)

                gAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCAt                                                                                                                      <  1:853898/140‑1 (MQ=255)

                gAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCAt                                                                                                                      <  1:868834/140‑1 (MQ=255)

                gAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCAt                                                                                                                      >  2:378206/1‑140 (MQ=255)

                 aaaGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATc                                                                                                                     <  1:598150/140‑1 (MQ=255)

                          aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAgaga                                                                                                            >  1:124935/1‑140 (MQ=255)

                          aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAgaga                                                                                                            >  1:175875/1‑140 (MQ=255)

                          aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAgaga                                                                                                            <  2:1006262/140‑1 (MQ=255)

                          aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAgaga                                                                                                            >  2:1179981/1‑140 (MQ=255)

                          aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAgaga                                                                                                            >  1:627803/1‑140 (MQ=255)

                          aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAgaga                                                                                                            >  1:1449622/1‑140 (MQ=255)

                          aGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAgaga                                                                                                            >  2:501592/1‑140 (MQ=255)

                            cggcgACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACa                                                                                                          >  2:781740/1‑140 (MQ=255)

                             ggcgACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAg                                                                                                         >  2:1361188/1‑140 (MQ=255)

                               cgACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAgcg                                                                                                       <  2:130049/140‑1 (MQ=255)

                               cgACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAgcg                                                                                                       >  2:1311793/1‑140 (MQ=255)

                               cgACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAgcg                                                                                                       >  1:806719/1‑140 (MQ=255)

                               cgACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAgcg                                                                                                       <  2:1239160/140‑1 (MQ=255)

                               cgACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAgcg                                                                                                       <  1:1224902/140‑1 (MQ=255)

                                 aCAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCa                                                                                                     <  1:864498/140‑1 (MQ=255)

                                  cAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCaa                                                                                                    <  1:517554/140‑1 (MQ=255)

                                  cAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCaa                                                                                                    <  1:1151153/140‑1 (MQ=255)

                                    ataataGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAgt                                                                                                  <  2:627592/140‑1 (MQ=255)

                                    ataataGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAgt                                                                                                  <  1:1529451/140‑1 (MQ=255)

                                       ataGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTa                                                                                               <  2:1513904/140‑1 (MQ=255)

                                        taGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTAt                                                                                              <  2:485504/140‑1 (MQ=255)

                                             aCTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTgtgt                                                                                         >  1:808735/1‑140 (MQ=255)

                                             aCTGGTCCTGTTCATAAATTTCATACTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTgtgt                                                                                         >  2:1137368/1‑140 (MQ=255)

                                               tGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTc                                                                                       >  2:244895/1‑140 (MQ=255)

                                               tGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTc                                                                                       >  1:1084757/1‑140 (MQ=255)

                                                ggTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCa                                                                                      <  1:858529/140‑1 (MQ=255)

                                                 gTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCAc                                                                                     >  1:412354/1‑140 (MQ=255)

                                                 gTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCAc                                                                                     >  1:1503088/1‑140 (MQ=255)

                                                 gTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCAc                                                                                     >  1:1243933/1‑140 (MQ=255)

                                                   ccTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCg                                                                                   <  2:646477/140‑1 (MQ=255)

                                                   ccTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCg                                                                                   <  2:875291/140‑1 (MQ=255)

                                                    cTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGc                                                                                  <  2:1516347/140‑1 (MQ=255)

                                                    cTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGc                                                                                  <  2:202632/140‑1 (MQ=255)

                                                      gTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCtc                                                                                >  1:878775/1‑140 (MQ=255)

                                                       ttCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCtca                                                                               >  1:579860/1‑140 (MQ=255)

                                                       ttCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCtca                                                                               >  1:238379/1‑140 (MQ=255)

                                                           tAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCaa                                                                           <  2:116515/140‑1 (MQ=255)

                                                              aTTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGa                                                                        <  2:1208579/140‑1 (MQ=255)

                                                                   aTCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGAcatca                                                                   <  1:567437/140‑1 (MQ=255)

                                                                    tCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGAcatcat                                                                  >  1:1456487/1‑140 (MQ=255)

                                                                      ctctGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTTATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCatga                                                                <  2:913138/140‑1 (MQ=255)

                                                                      ctctGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCatga                                                                >  2:628205/1‑140 (MQ=255)

                                                                      ctctGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCatga                                                                <  1:536941/140‑1 (MQ=255)

                                                                               gTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTACAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAatgat                                                       <  1:1009982/140‑1 (MQ=255)

                                                                                   aTACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGata                                                   >  2:808842/1‑140 (MQ=255)

                                                                                   aTACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGata                                                   <  1:1179981/140‑1 (MQ=255)

                                                                                   aTACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGata                                                   <  1:418400/140‑1 (MQ=255)

                                                                                   aTACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGata                                                   >  2:1457724/1‑140 (MQ=255)

                                                                                     aCTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATAtt                                                 <  1:1517036/140‑1 (MQ=255)

                                                                                     aCTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATAtt                                                 <  2:741459/140‑1 (MQ=255)

                                                                                     aCTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATAtt                                                 <  1:781740/140‑1 (MQ=255)

                                                                                      cTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCTCCGCTCATCAAAGACATCATGATGAAATGATGATATTc                                                <  1:745967/140‑1 (MQ=255)

                                                                                        gAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCg                                              <  1:491544/140‑1 (MQ=255)

                                                                                         aGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGc                                             >  1:1003481/1‑140 (MQ=255)

                                                                                          gTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCa                                            >  2:181607/1‑140 (MQ=255)

                                                                                          gTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCa                                            >  2:648591/1‑140 (MQ=255)

                                                                                          gTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCa                                            >  1:1368013/1‑140 (MQ=255)

                                                                                           tAGCGTTTAAGCGACCTTAGCTTTGCTACAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCAt                                           <  1:732920/140‑1 (MQ=255)

                                                                                             gCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATaa                                         <  2:303126/140‑1 (MQ=255)

                                                                                              cGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAg                                        >  2:659528/1‑140 (MQ=255)

                                                                                                tttAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGaa                                      >  2:522631/1‑140 (MQ=255)

                                                                                                        aCCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCAt                              >  1:1171564/1‑140 (MQ=255)

                                                                                                        aCCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCAt                              >  1:1320469/1‑140 (MQ=255)

                                                                                                        aCCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCAt                              <  2:412354/140‑1 (MQ=255)

                                                                                                        aCCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCAt                              >  1:353069/1‑140 (MQ=255)

                                                                                                        aCCTTAGCTTTGCTGCAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCAt                              <  2:1114926/140‑1 (MQ=255)

                                                                                                                  tgctgcAACATCAGGCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACg                    <  2:808735/140‑1 (MQ=255)

                                                                                                                  tgctgcAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACg                    <  1:181607/140‑1 (MQ=255)

                                                                                                                   gctgcAACATCAGCCCACAGGCGCCAGACCAGGTGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGc                   >  2:1085877/1‑140 (MQ=255)

                                                                                                                   gctgcAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGc                   >  1:1360735/1‑140 (MQ=255)

                                                                                                                    ctgcAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGTGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCa                  <  2:1218048/140‑1 (MQ=255)

                                                                                                                    ctgcAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCa                  <  2:1207626/140‑1 (MQ=255)

                                                                                                                    ctgcAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCa                  <  2:333385/140‑1 (MQ=255)

                                                                                                                    ctgcAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCa                  <  1:432634/140‑1 (MQ=255)

                                                                                                                    ctgcAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCa                  <  1:1376267/140‑1 (MQ=255)

                                                                                                                    ctgcAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCa                  <  2:1449622/140‑1 (MQ=255)

                                                                                                                    ctgcAACATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCa                  <  2:859078/140‑1 (MQ=255)

                                                                                                                         aCATCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTgcg             <  2:756849/140‑1 (MQ=255)

                                                                                                                            tCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTg          <  1:620389/140‑1 (MQ=255)

                                                                                                                            tCAGCCCACAGGCGCCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTg          >  1:958607/1‑140 (MQ=255)

                                                                                                                                    caGGCGCCAGACCAGGGGGTTCATCCTGAAGAGACAGCGCAAGTGTTTTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGCTATTCCGCATAAGCATGAGGCATTTTTTAAACGCAATGCGATGAAgtcgag  >  2:475502/1‑136 (MQ=14)

GGCAGATATCAATAAGGAAAGTACTGAGCGGCGACAATAATAGGGACTGGTCCTGTTCATAAATTTCATCCTCTGAAAAGTGAATACTGAGTAGCGTTTAAGCGACCTTAGCTTTGCTGCAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGG  >  NC_000913/2782667‑2782938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A