Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	162	93.0	3098984	99.0%	3067994	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,059,205	T→C	T41A (ACA→GCA)	rpiA ←	ribose‑5‑phosphate isomerase A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,059,205	0	T	C	100.0%	289.2 / NA	79	T41A (ACA→GCA)	rpiA	ribose‑5‑phosphate isomerase A
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (37/42); total (37/42)

TTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGTACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAATTCATCCTGCGTCATGATCGTTTCGCCTGT  >  NC_000913/3059071‑3059340

ttCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGa                                                                                                                                    >  1:617867/1‑140 (MQ=255)

 tCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAg                                                                                                                                   <  1:1541402/140‑1 (MQ=255)

  cATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAAGTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAgc                                                                                                                                  >  2:856749/1‑140 (MQ=255)

   aTCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAgcg                                                                                                                                 <  1:757600/140‑1 (MQ=255)

   aTCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAgcg                                                                                                                                 <  2:640033/140‑1 (MQ=255)

     cTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGTAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGcgcg                                                                                                                               >  2:302476/1‑140 (MQ=255)

     cTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGcgcg                                                                                                                               <  2:107665/140‑1 (MQ=255)

        cgcCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGTGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCa                                                                                                                            >  2:243217/1‑140 (MQ=255)

          ccATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAAt                                                                                                                          <  2:1401021/140‑1 (MQ=255)

                       tGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGGACCGAGCGCGTCAATAAAGTGTgcggcg                                                                                                             >  2:216895/1‑140 (MQ=255)

                       tGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGACGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGCCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTgcggcg                                                                                                             >  1:399547/1‑140 (MQ=255)

                        gCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGcggcgg                                                                                                            >  1:856496/1‑140 (MQ=255)

                        gCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGcggcgg                                                                                                            >  2:757156/1‑140 (MQ=255)

                        gCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGcggcgg                                                                                                            >  1:171283/1‑140 (MQ=255)

                         ccAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAACCGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGt                                                                                                           <  2:1111313/140‑1 (MQ=255)

                         ccAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGcggcggg                                                                                                           >  1:544595/1‑139 (MQ=255)

                         ccAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGt                                                                                                           <  2:117265/140‑1 (MQ=255)

                          cAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCGTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTg                                                                                                          <  1:188999/140‑1 (MQ=255)

                           aaGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTgg                                                                                                         <  1:3066/140‑1 (MQ=255)

                           aaGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTgg                                                                                                         >  2:1240434/1‑140 (MQ=255)

                           aaGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTgg                                                                                                         <  1:906921/140‑1 (MQ=255)

                           aaGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTgg                                                                                                         >  2:994773/1‑140 (MQ=255)

                            aGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGa                                                                                                        >  1:1326170/1‑140 (MQ=255)

                              gCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAAc                                                                                                      >  2:473246/1‑140 (MQ=255)

                               cTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAAcc                                                                                                     <  1:572539/140‑1 (MQ=255)

                                 gTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCGCCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTg                                                                                                   >  2:399911/1‑140 (MQ=255)

                                  tCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGt                                                                                                  >  1:394274/1‑140 (MQ=255)

                                   cGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTa                                                                                                 <  2:255696/140‑1 (MQ=255)

                                   cGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTa                                                                                                 <  1:1458951/140‑1 (MQ=255)

                                     atttCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTAcc                                                                                               <  2:960454/138‑1 (MQ=255)

                                     aCTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTAcc                                                                                               <  2:1017744/140‑1 (MQ=255)

                                     aCTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTAcc                                                                                               <  1:400368/140‑1 (MQ=255)

                                       ttCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTa                                                                                             >  2:1459812/1‑140 (MQ=255)

                                        tCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTac                                                                                            >  1:224735/1‑140 (MQ=255)

                                        tCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTac                                                                                            >  1:1468105/1‑140 (MQ=255)

                                           ttGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACAcc                                                                                         <  2:136759/140‑1 (MQ=255)

                                            tGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACca                                                                                        >  2:521251/1‑140 (MQ=255)

                                             gagaTCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACcaa                                                                                       <  1:1352535/140‑1 (MQ=255)

                                                aTCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACcaacaa                                                                                    >  2:983466/1‑140 (MQ=255)

                                                aTCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACcaacaa                                                                                    >  1:1342502/1‑140 (MQ=255)

                                                     aaaCGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTg                                                                               <  2:1033704/140‑1 (MQ=255)

                                                        cGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTTGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCg                                                                            >  1:1495383/1‑140 (MQ=255)

                                                        cGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCg                                                                            >  1:1232267/1‑140 (MQ=255)

                                                          tGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCggg                                                                          <  2:1241619/140‑1 (MQ=255)

                                                          tGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCggg                                                                          >  1:595162/1‑140 (MQ=255)

                                                           gAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGc                                                                         <  1:216895/140‑1 (MQ=255)

                                                            aaTGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCt                                                                        <  2:479274/140‑1 (MQ=255)

                                                                   aGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATa                                                                 >  2:517212/1‑140 (MQ=255)

                                                                      cTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTg                                                              <  2:171283/140‑1 (MQ=255)

                                                                      cTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTg                                                              <  1:1247395/140‑1 (MQ=255)

                                                                        tttcagtttttcagtGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGaa                                                            >  2:431612/1‑140 (MQ=255)

                                                                         ttcagtttttcagtGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAg                                                           >  2:959929/1‑140 (MQ=255)

                                                                           cagtttttcagtGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTg                                                         <  2:856496/140‑1 (MQ=255)

                                                                             gtttttcagtGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTgcc                                                       <  1:473246/140‑1 (MQ=255)

                                                                             gtttttcagtGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTgcc                                                       <  2:1342502/140‑1 (MQ=255)

                                                                             gtttttcagtGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTgcc                                                       <  1:617192/140‑1 (MQ=255)

                                                                                tttcagtGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTgccgcc                                                    <  1:1459812/140‑1 (MQ=255)

                                                                                tttcagtGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTgccgcc                                                    >  1:71413/1‑140 (MQ=255)

                                                                                        gAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTAc                                            >  1:1124924/1‑140 (MQ=255)

                                                                                            cATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCt                                        >  1:1522557/1‑140 (MQ=255)

                                                                                            cATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCt                                        <  1:511876/140‑1 (MQ=255)

                                                                                              tCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCttt                                      >  1:1003640/1‑140 (MQ=255)

                                                                                               cTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCtgtt                                     >  1:783829/1‑140 (MQ=255)

                                                                                                tGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCttttt                                    <  2:617867/140‑1 (MQ=255)

                                                                                                tGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCttttt                                    <  1:757156/140‑1 (MQ=255)

                                                                                                tGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCttttt                                    <  2:399547/140‑1 (MQ=255)

                                                                                                     tGGAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAAt                               <  2:472683/140‑1 (MQ=255)

                                                                                                       gAAACGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAATTc                             >  2:837307/1‑140 (MQ=255)

                                                                                                          aCGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAATTCATc                          <  1:983466/140‑1 (MQ=255)

                                                                                                           cGGCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAATTCATcc                         <  2:1232267/140‑1 (MQ=255)

                                                                                                            ggCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAATTCATCCt                        <  1:856749/140‑1 (MQ=255)

                                                                                                            ggCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAATTCATCCt                        >  1:1137422/1‑140 (MQ=255)

                                                                                                             gCCCCTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAATTCATCCTg                       <  1:517212/140‑1 (MQ=255)

                                                                                                              ccccTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAATTCATCCTGc                      >  1:642670/1‑140 (MQ=255)

                                                                                                                ccTTCAATCTGGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAATTCATCCTGCGt                    <  2:713851/140‑1 (MQ=255)

                                                                                                                    cAATCTTGCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAATTCATCCTGCGTCATg                <  2:1495383/140‑1 (MQ=255)

                                                                                                                           gCCTTTCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAATTCATCCTGCGTCATGATCGttt         >  2:313777/1‑140 (MQ=255)

                                                                                                                              tttCATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAATTCATCCTGCGTCATGATCGTTTCGc      >  1:960302/1‑140 (MQ=255)

                                                                                                                                 cATTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAATTCATCCTGCGTCATGATCGTTTCGCCtg   <  2:1326170/140‑1 (MQ=255)

                                                                                                                                  aTTGCACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAATTCATCCTGCGTCATGATCGTTTCGCCtgt  <  2:1124924/140‑1 (MQ=255)

TTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGGAAGCATCTGAACTGGAAACGGCCCCTTCAATCTGGCCTTTCATTGTACCGAGCGCGTCAATAAAGTGTGCGGCGGTGGAACCTGTACCTACACCAACAATGGTGCCGGGCTGAACATACTGAAGTGCCGCCCATCCTACTGCTTTTTTCAATTCATCCTGCGTCATGATCGTTTCGCCTGT  >  NC_000913/3059071‑3059340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A